Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Reverse (-)

860955 .. 872601

Gene Structure 11647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01400.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4335 bp

ATGGACAATGAATTGAATCATGGAGAACAATTGCCACGTGCTTGCATAACTGGGGTACATCTAAATGTTTCTACTCGGGAAGATACGGAGAAAATATCAACATTATTAATCGAGACAGCGGCTCAGGTGAATGATCCAAAGTTGGGACTTCCAAATCCAACATCTCAGTGTTCTACTTGTGGTGCTCAAGATACAAAGTTGTGTGATGGTCATTTTGGGTCCATCAAGTTTCCATGTTCAATACTCCATCCGTACTATCTATCAGAAGTTTCTCTTATCTTAAACAAGATTTGCCCAGCATGTAAAGCCATCAAGCAGGGTGTAAGGGTCAAGGGCTCTGAACGGAAGGGCTGCAGATATTGCTTTGGAGGTTCATCTGACTACCCAAGAATGAGGTTCAAAGTTTCTTCAAGAGAGCTTTTCAGAAGAAGCACAATAATAGTAGAAGCAGCTGGAGAATTGCCTCCTGATTATTGGGACTTCATTCCCAAAGATCCCCAACATGATGAAACGAACACAAATCCTCATAGAAAAGTTCTATCTCACGCCCAGGTTCATTTTTTGTTGAGCGATGTTGATTCAAATTTCATCACAAAGTTCGTTCCAACTACCAGCTCACTTTCTTTGGACTGTTTCCTCGTAACTCCCAATTGTCATCGTGTGACAGAAGTTATGTATTCATTTAATAATGGCCAGTCATTGATGTTTGATGACCGGACTAGAGCTTACAGGAAACTAGTGGATTTCAGAGGCACTGCAAACGAGTTGGGTTCTCGTGTTTTGGACTGCCTTAAAATTTCCAAGATAAACAAAGAGAAAACAGGCAGAGATTCAATTTCAGTTGAGCAACAAAAGATCAAAGACTCTCCTTCTAGAACATCTGGCTTGAGATGGATTAAAGATGTTGTTCTTGGAAAGAGAAGTGATCACTGTTTCCGAATGGTTGTTGTGGGTGATCCAAATATCAAGCTGAGTGAGATTGGCATTCCCCGTCATATTGCAGAGAAAATGCAGATCTCTGAGAATCTGAACCAATATAACTTTGAGAAGTTGTTTGTGTTTTGCCAGCTGCGCCTTGGCCCTGATGGGAGAGGAGACATACATGTTCGTAGAAATGACAGTCTAGTTAGGATACGTAAACCAGAAGAACTGGAGATGGGAGATATCATATACAGGGCATTGAGCAATGGAGATGTTGTGTTGATAAATAGGCCTCCATCAATACATCAACATTCTCTAATAGCTTTAACCACAAAGGTCCTACCAGTAAACTCTGTAGTGTCAATAAATCCACTGTGTTGCTCTCCTTTTCAAGGAGATTTTGATGGTGATTGCCTTCACGGTTATGTTCCTCAATCTGTGGAGACTAGAGTTGAGCTTACAGAGCTTGTTGCATTAGATAAGCAATTAGTTAACGGGCAGAGTGGTACCAACCTTATGTCTCTCAGTCAAGATAGTTTAACTGCTTTCTATCTCATCACGGAAGATGGCACTTTGATGAATAAATTTCAAATGCAACAACTGAATATGCTTTGTCCCCATGAACTGCCATTACCAGCAGTAATAAAACATCCTTCTGGTAATTCCGTTTCTTGGACAGCAAAGCAGATTGTCAGCATGTTTCTACCTGCAGATTTTGACTATGCTTTTCCTTCCAATGGTGTTTATATCAGCAATGGGGAGCTTATAGCTTCTTCTGAAGGTTCTTCTTGGCTGCGAGACACCAGTGGGAATCTTTTCCAAAGTCTTACGGAACATTGCCACGGTCAGGTACTTGACATCTTCTTTTCTGCTCAGGGAGTTCTATGTGAGTGGTTGTCAATGAGGGGCTTGAGTGTTTCTCTCTCAGACTTGTATCTTGCTTCAGATACATGTTCAAGGAAAAACTTGATGGAGGAGATCTTCTATGGGTTACAAGAAGCAGAGGAGGCATGTACTATCAGACAGTTGATGCTTGATTCTTTTCAGGATTTTCTTATGGGCTATGATGAGAACAAAAGTCAAAGTCCTTTGACTTTTGGTTCAGAACATTTTTGTTATCAGAAGCAGAAAACTGCTGCTCTTAGTCAGGTCACAGTAGATGCTATCAAGGAAGGTTTCCGTGATGTTCAAAATTTAGCATACAAATATGCCGGTGTGGATAACTCTTTACTGGCTATGTTTAAGGCCGGAAGTAAGGGTAATATGCTGAAGTTGGTTCAGCACTGTATGTGTCTTGGTTTGCAGCATTCACTGGTTCCCTTATCATTCAAGTTTCCGAACCAGCTCTCATGTGATGCATGGAATGATCAAAAAGCACGTGGTATTGTTCAGGAGGTTGGCAGAAATTTTGAGTCCATTGAGTCATATATCCCATCTGCTGTTGTTAAAAGTTCGTTCTTGACTGGCCTAAATCCAGTTGAATGCTTTGTTCATTCAGTCACAAGTCGAGATGGTTCTTTTAGTAATAATGCTGAGCTTCCTGGGACTCTTAATCGAAAGCTCATGTATTTCATGCGCGATCTGCATACTGCTTATGACGGAACAGTTAGAAACGCTTATGGTAACCAGCTTATCCAATTCTCGTATGATATTGATGAGGGCATATCTACTGCAGATAGCACTACAAACAGCTCATATGCAAAGAGTGTTATTAATTGTGGCGGCAGCCAACCCGTTGGCGCATTGTCTGCTTGTGCAATTTCGGAAGCTGCATACAGTGCATTAGATCAGCCTGTTAGTTTACTTGAAGCTTCTCCTCTGCTAAATCTGAAGAACATCTTGGAATGTGGTTCAAAGAGAAGCAGCGCTAAGCAAACTATGTCATTATTTTTATCTGACAAGCTTGATAGACATAGGCACGGTTTTGAGTATGGAGCCCTAGAAGTTAAGAATCATTTGGAGGGGCTCAATTTTTCAGACATTGTTTCTACTGTCATGATAATGTTCTCCTCACAATCTGGTAGCAAGATGCGTTTCAGTCCTTGGGTTTCTCACTTTCATATATCTAAGGAAATTGTACGAAGAAGAAGGCTGAATGTGCAATCTATTATAGAGGCACTTTATGCAATGTGCAACTCGGCTGGAGCAGATTTGAAAATTATTCTATGGAATTTGAAGATCGCAAGAAATAAGGAATGTGATTGCTGCAGCACACCTAATGATACATTTTGCATCAGTGTAACACTGACTGAAAAGTACAACAACTCTTCTAAAGAACTAGATAAAACTCGAGTCTTGGTAATACCGTTCTTGCTTAAAACAGTAGTTAAAGGTTTCCTGGAGATAAAAAAGGTGGATATTCTATGGATTGATCGACCTGGTTCATCTGGAGAACTCTGCTTGAGAGTTTCTATGTCAGGAAAAACCAGAAAGGGGACAACCTTGTGGAATATGCTTATGGACGATTGTATTCCGGTCATGGATATGATTGATTGGTCACGAAGTCATCCAGACAATGTCCATGACATCTGCACTGCCTATGGAATAGATGTTGGGCAGAAACATTTCCTTAATAAGTTGGAGTCGGCGACTAAAGATGTTGGAAAGACGATTCTTCCTCAACACTTGCTTCTTGTAGCAGATTGTTTGTCAGCCACTGGCGAGTTTGTCAGCTTAAATGCAAAAGGCATTGGTCAACAATTGGAACATGCATCTGTTATAGCCCCTTTCATGCAAGCTTGCTTTTCTACTCCTGGTCCTTGCTTGGTTAAAGCTGCTAAGGTCGGAGTGGTGGATAATCTCCAGGGGAGTTTGGATGCATTGACTTGGGGAAATACTCCATCCTTGGGAAGTGGTGGACAGTTTGATATTATATTTTCTAAGGGACCTGTGTCTTCTAAGCCAATTAAAGTTTATGATCTGCTGAGCAGCCAAATCATTACCAACCCTCAGAATGGATTTGAAATGTCTGATGCTCCAATTCATCTATCTGACAAATTTGTTGCTCCAAATATGTACAAGAATGGTTATTTGCGCAAGTGGGAGAGTATTACCAAATCAGTCTTGCGAGAAAATCTTACAATCCAGGATATCGATAGATTGTCTCAAGCCTTGAAGAATATATTGCAGAAGTATGACGTCAACGAACGCATAAATGATATGGACAAACAAGTGTTGATGATGGTTTTACGTTTTCACCCTCATGGAGATCGTAAGATCGGATTAGGAATCAAAGAAGTAAAGGTTGGTCACCACCCTGACCATGAGAATGTACGATGCTTCATGCTAGTACGAACAGATGGGACGATAGAAGATGTTTCTTACCACAAGTGCATCTGTGGTGCTTATGATATCATAGCTCCTCATAGGGCAAAGGGTTATCGCGTACGATACATGAGCCGTGGTCCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1445

Amino Acids

161.11

Weight (kDa)

7.34

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	43 - 105	1.6e-07	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	305 - 464	4.6e-34	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	469 - 618	2.9e-21	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	686 - 743	8.6e-09	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	1126 - 1207	1.1e-06	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	4062
Acc16I	TGCGCA	1 cut(s)	3956
Acc36I	ACCTGC	1 cut(s)	1636
Acc65I	GGTACC	1 cut(s)	1427
AccB1I	GGYRCC	1 cut(s)	1427
AccII	CGCG	2 cut(s)	2499, 4305
AciI	CCGC	2 cut(s)	119, 2643
AclWI	GGATC	3 cut(s)	128, 488, 950
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	7 cut(s)	583, 795, 1505, 2113, 2326, 3091, 3917
AcuI	CTGAAG	4 cut(s)	1719, 1848, 2210, 2771
AcvI	CACGTG	2 cut(s)	38, 2300
AcyI	GRCGYC	1 cut(s)	4059
AfeI	AGCGCT	1 cut(s)	2788
AfiI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 1768, 3354, 3767, 3875
AflIII	ACRYGT	2 cut(s)	1102, 1871
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
AjuI	GAANNNNNNNTTGG	4 cut(s)	2744, 2776, 4149, 4181
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	6 cut(s)	107, 1089, 1358, 1446, 1713, 4029
AlwI	GGATC	3 cut(s)	128, 488, 950
AlwNI	CAGNNNCTG	1 cut(s)	3578
Ama87I	CYCGRG	2 cut(s)	75, 3210
Aor51HI	AGCGCT	1 cut(s)	2788
AoxI	GGCC	5 cut(s)	691, 1078, 1211, 2166, 2386
ApoI	RAATTY	7 cut(s)	583, 795, 1505, 2113, 2326, 3091, 3917
AseI	ATTAAT	2 cut(s)	107, 2634
Asp700I	GAANNNNTTC	2 cut(s)	1736, 3485
Asp718I	GGTACC	1 cut(s)	1427
AspLEI	GCGC	5 cut(s)	1074, 2499, 2663, 2789, 3957
AspS9I	GGNCC	6 cut(s)	219, 1079, 1258, 3677, 3806, 4325
AsuHPI	GGTGA	5 cut(s)	139, 965, 1340, 4109, 4163
AvaI	CYCGRG	2 cut(s)	75, 3210
AvaII	GGWCC	5 cut(s)	219, 1258, 3677, 3806, 4325
BalI	TGGCCA	1 cut(s)	693
BanI	GGYRCC	1 cut(s)	1427
BanII	GRGCYC	3 cut(s)	338, 2860, 2889
BauI	CACGAG	1 cut(s)	774
BbrPI	CACGTG	2 cut(s)	38, 2300
BbsI	GAAGAC	1 cut(s)	3807
Bbv12I	GWGCWC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	4305
BciT130I	CCWGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
BciVI	GTATCC	1 cut(s)	1125
BclI	TGATCA	2 cut(s)	925, 2287
BcoDI	GTCTC	6 cut(s)	107, 1089, 1358, 1446, 1713, 4029
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	8 cut(s)	720, 737, 873, 1124, 1368, 2861, 3200, 4208
BfmI	CTRYAG	5 cut(s)	352, 1275, 1629, 2592, 3127
BfoI	RGCGCY	1 cut(s)	2790
BfuAI	ACCTGC	1 cut(s)	1636
BfuI	GTATCC	1 cut(s)	1125
BglII	AGATCT	2 cut(s)	1014, 1899
BlpI	GCTNAGC	3 cut(s)	2454, 2790, 3845
Bme1390I	CCNGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
Bme18I	GGWCC	5 cut(s)	219, 1258, 3677, 3806, 4325
BmeT110I	CYCGRG	2 cut(s)	75, 3210
BmgT120I	GGNCC	6 cut(s)	219, 1079, 1258, 3677, 3806, 4325
BmiI	GGNNCC	5 cut(s)	220, 1429, 2238, 2857, 3807
BmrFI	CCNGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BoxI	GACNNNNGTC	1 cut(s)	3811
BpiI	GAAGAC	1 cut(s)	3807
BplI	GAGNNNNNCTC	2 cut(s)	1825, 1857
BpmI	CTGGAG	6 cut(s)	474, 1172, 3084, 3281, 3330, 3707
Bpu10I	CCTNAGC	3 cut(s)	123, 1794, 3699
Bpu1102I	GCTNAGC	3 cut(s)	2454, 2790, 3845
BpuEI	CTTGAG	5 cut(s)	171, 907, 1852, 3343, 4011
Bsa29I	ATCGAT	1 cut(s)	4014
BsaAI	YACGTR	3 cut(s)	38, 1136, 2300
BsaHI	GRCGYC	1 cut(s)	4059
BsaJI	CCNNGG	9 cut(s)	549, 1075, 1762, 2462, 2963, 3724, 3765, 4321, 4328
BsaWI	WCCGGW	2 cut(s)	714, 3394
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 1768, 3354, 3767, 3875
Bse118I	RCCGGY	1 cut(s)	2132
Bse3DI	GCAATG	4 cut(s)	1192, 1681, 1756, 3054
BseBI	CCWGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
BseCI	ATCGAT	1 cut(s)	4014
BseDI	CCNNGG	9 cut(s)	549, 1075, 1762, 2462, 2963, 3724, 3765, 4321, 4328
BseGI	GGATG	5 cut(s)	247, 1570, 3427, 3742, 3761
BseLI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 1768, 3354, 3767, 3875
BseMI	GCAATG	4 cut(s)	1192, 1681, 1756, 3054
BseRI	GAGGAG	6 cut(s)	1107, 1910, 1940, 2727, 2920, 4272
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	3436
Bsh1236I	CGCG	2 cut(s)	2499, 4305
BshFI	GGCC	5 cut(s)	693, 1080, 1213, 2168, 2388
BshNI	GGYRCC	1 cut(s)	1427
BshVI	ATCGAT	1 cut(s)	4014
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	2 cut(s)	75, 3210
BsiSI	CCGG	4 cut(s)	715, 2133, 2169, 3395
BsiWI	CGTACG	1 cut(s)	4306
BslFI	GGGAC	7 cut(s)	159, 491, 1521, 2479, 3370, 3819, 4237
BslI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 1768, 3354, 3767, 3875
BsmAI	GTCTC	6 cut(s)	107, 1089, 1358, 1446, 1713, 4029
BsmFI	GGGAC	7 cut(s)	159, 491, 1521, 2479, 3370, 3819, 4237
BsmI	GAATGC	3 cut(s)	984, 2227, 2408
BsnI	GGCC	5 cut(s)	693, 1080, 1213, 2168, 2388
BsoBI	CYCGRG	2 cut(s)	75, 3210
Bsp1286I	GDGCHC	4 cut(s)	187, 338, 2860, 2889
Bsp1407I	TGTACA	1 cut(s)	3936
Bsp1720I	GCTNAGC	3 cut(s)	2454, 2790, 3845
BspACI	CCGC	2 cut(s)	119, 2643
BspANI	GGCC	5 cut(s)	693, 1080, 1213, 2168, 2388
BspDI	ATCGAT	1 cut(s)	4014
BspFNI	CGCG	2 cut(s)	2499, 4305
BspHI	TCATGA	1 cut(s)	2916
BspLI	GGNNCC	5 cut(s)	220, 1429, 2238, 2857, 3807
BspMAI	CTGCAG	4 cut(s)	356, 1633, 2596, 3131
BspMI	ACCTGC	1 cut(s)	1636
BspPI	GGATC	3 cut(s)	128, 488, 950
BspT107I	GGYRCC	1 cut(s)	1427
BsrDI	GCAATG	4 cut(s)	1192, 1681, 1756, 3054
BsrFI	RCCGGY	1 cut(s)	2132
BsrGI	TGTACA	1 cut(s)	3936
BssAI	RCCGGY	1 cut(s)	2132
BssECI	CCNNGG	9 cut(s)	549, 1075, 1762, 2462, 2963, 3724, 3765, 4321, 4328
BssNI	GRCGYC	1 cut(s)	4059
BssSI	CACGAG	1 cut(s)	774
BssT1I	CCWWGG	3 cut(s)	1075, 2963, 3765
Bst2BI	CACGAG	1 cut(s)	774
Bst2UI	CCWGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
Bst6I	CTCTTC	1 cut(s)	3193
BstACI	GRCGYC	1 cut(s)	4059
BstAPI	GCANNNNNTGC	4 cut(s)	360, 2669, 2699, 3044
BstAUI	TGTACA	1 cut(s)	3936
BstBAI	YACGTR	3 cut(s)	38, 1136, 2300
BstC8I	GCNNGC	4 cut(s)	43, 1067, 3657, 3661
BstDSI	CCRYGG	2 cut(s)	1762, 4321
BstEII	GGTNACC	2 cut(s)	2543, 4169
BstENI	CCTNNNNNAGG	1 cut(s)	1311
BstF5I	GGATG	5 cut(s)	247, 1570, 3427, 3742, 3761
BstFNI	CGCG	2 cut(s)	2499, 4305
BstH2I	RGCGCY	1 cut(s)	2790
BstHHI	GCGC	5 cut(s)	1074, 2499, 2663, 2789, 3957
BstMAI	GTCTC	6 cut(s)	107, 1089, 1358, 1446, 1713, 4029
BstNI	CCWGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
BstNSI	RCATGY	6 cut(s)	303, 1106, 1621, 1875, 1935, 3632
BstPAI	GACNNNNGTC	1 cut(s)	3811
BstPI	GGTNACC	2 cut(s)	2543, 4169
BstSCI	CCNGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
BstSFI	CTRYAG	5 cut(s)	352, 1275, 1629, 2592, 3127
BstSNI	TACGTA	1 cut(s)	1136
BstUI	CGCG	2 cut(s)	2499, 4305
BstV2I	GAAGAC	1 cut(s)	3807
BstX2I	RGATCY	3 cut(s)	493, 1014, 1899
BstXI	CCANNNNNNTGG	1 cut(s)	2657
BstYI	RGATCY	3 cut(s)	493, 1014, 1899
Bsu15I	ATCGAT	1 cut(s)	4014
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	5 cut(s)	693, 1080, 1213, 2168, 2388
BsuTUI	ATCGAT	1 cut(s)	4014
BtgI	CCRYGG	2 cut(s)	1762, 4321
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	5 cut(s)	247, 1570, 3427, 3742, 3761
BtsI	GCAGTG	2 cut(s)	753, 3453
BveI	ACCTGC	1 cut(s)	1636
Cac8I	GCNNGC	4 cut(s)	43, 1067, 3657, 3661
CaiI	CAGNNNCTG	1 cut(s)	3578
CciI	TCATGA	1 cut(s)	2916
CfoI	GCGC	5 cut(s)	1074, 2499, 2663, 2789, 3957
Cfr10I	RCCGGY	1 cut(s)	2132
Cfr13I	GGNCC	6 cut(s)	219, 1079, 1258, 3677, 3806, 4325
ClaI	ATCGAT	1 cut(s)	4014
CsiI	ACCWGGT	1 cut(s)	3298
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	3193
EarI	CTCTTC	1 cut(s)	3193
Eco105I	TACGTA	1 cut(s)	1136
Eco130I	CCWWGG	3 cut(s)	1075, 2963, 3765
Eco147I	AGGCCT	1 cut(s)	1213
Eco24I	GRGCYC	3 cut(s)	338, 2860, 2889
Eco32I	GATATC	3 cut(s)	1165, 4012, 4273
Eco47I	GGWCC	5 cut(s)	219, 1258, 3677, 3806, 4325
Eco47III	AGCGCT	1 cut(s)	2788
Eco57I	CTGAAG	4 cut(s)	1719, 1848, 2210, 2771
Eco72I	CACGTG	2 cut(s)	38, 2300
Eco88I	CYCGRG	2 cut(s)	75, 3210
Eco91I	GGTNACC	2 cut(s)	2543, 4169
EcoNI	CCTNNNNNAGG	1 cut(s)	1311
EcoO109I	RGGNCCY	2 cut(s)	1258, 3806
EcoO65I	GGTNACC	2 cut(s)	2543, 4169
EcoRII	CCWGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
EcoRV	GATATC	3 cut(s)	1165, 4012, 4273
EcoT14I	CCWWGG	3 cut(s)	1075, 2963, 3765
EcoT22I	ATGCAT	3 cut(s)	2281, 3634, 3742
EcoT38I	GRGCYC	3 cut(s)	338, 2860, 2889
ErhI	CCWWGG	3 cut(s)	1075, 2963, 3765
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 2744, 2776
FaqI	GGGAC	7 cut(s)	159, 491, 1521, 2479, 3370, 3819, 4237
FauNDI	CATATG	1 cut(s)	2617
FbaI	TGATCA	2 cut(s)	925, 2287
FokI	GGATG	5 cut(s)	234, 1557, 3414, 3748, 3749
FriOI	GRGCYC	3 cut(s)	338, 2860, 2889
FspBI	CTAG	8 cut(s)	720, 737, 873, 1124, 1368, 2861, 3200, 4208
FspI	TGCGCA	1 cut(s)	3956
GlaI	GCGC	5 cut(s)	1073, 2498, 2662, 2788, 3956
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	6 cut(s)	474, 1172, 3084, 3281, 3330, 3707
HaeII	RGCGCY	1 cut(s)	2790
HaeIII	GGCC	5 cut(s)	693, 1080, 1213, 2168, 2388
HapII	CCGG	4 cut(s)	715, 2133, 2169, 3395
HhaI	GCGC	5 cut(s)	1074, 2499, 2663, 2789, 3957
Hin1I	GRCGYC	1 cut(s)	4059
Hin6I	GCGC	5 cut(s)	1072, 2497, 2661, 2787, 3955
HinP1I	GCGC	5 cut(s)	1072, 2497, 2661, 2787, 3955
HincII	GTYRAC	3 cut(s)	1414, 3617, 4063
HindII	GTYRAC	3 cut(s)	1414, 3617, 4063
HindIII	AAGCTT	3 cut(s)	2730, 2822, 3657
HpaI	GTTAAC	1 cut(s)	1414
HpaII	CCGG	4 cut(s)	715, 2133, 2169, 3395
HphI	GGTGA	5 cut(s)	139, 965, 1340, 4109, 4163
Hpy166II	GTNNAC	7 cut(s)	1139, 1270, 1414, 2723, 3617, 3779, 4063
Hpy8I	GTNNAC	7 cut(s)	1139, 1270, 1414, 2723, 3617, 3779, 4063
HpyAV	CCTTC	8 cut(s)	340, 879, 1346, 1584, 1662, 1694, 2087, 3003
HpyCH4IV	ACGT	5 cut(s)	37, 1135, 2299, 4059, 4111
HpySE526I	ACGT	5 cut(s)	37, 1135, 2299, 4059, 4111
Hsp92I	GRCGYC	1 cut(s)	4059
HspAI	GCGC	5 cut(s)	1072, 2497, 2661, 2787, 3955
KpnI	GGTACC	1 cut(s)	1431
Ksp22I	TGATCA	2 cut(s)	925, 2287
KspAI	GTTAAC	1 cut(s)	1414
LmnI	GCTCC	6 cut(s)	1681, 2855, 3065, 3901, 3931, 4285
MabI	ACCWGGT	1 cut(s)	3298
MaeI	CTAG	8 cut(s)	720, 737, 873, 1124, 1368, 2861, 3200, 4208
MaeII	ACGT	5 cut(s)	37, 1135, 2299, 4059, 4111
MaeIII	GTNAC	9 cut(s)	640, 661, 1911, 2071, 2419, 2543, 3160, 3417, 4169
MfeI	CAATTG	3 cut(s)	29, 649, 3620
MflI	RGATCY	3 cut(s)	493, 1014, 1899
MhlI	GDGCHC	4 cut(s)	187, 338, 2860, 2889
MlsI	TGGCCA	1 cut(s)	693
MluNI	TGGCCA	1 cut(s)	693
MlyI	GAGTC	6 cut(s)	857, 2342, 2351, 2461, 3222, 3512
MmeI	TCCRAC	5 cut(s)	182, 629, 3480, 3502, 3685
Mox20I	TGGCCA	1 cut(s)	693
Mph1103I	ATGCAT	3 cut(s)	2281, 3634, 3742
MroXI	GAANNNNTTC	2 cut(s)	1736, 3485
MscI	TGGCCA	1 cut(s)	693
MslI	CAYNNNNRTG	8 cut(s)	63, 166, 1344, 1496, 2921, 3404, 4122, 4188
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	3 cut(s)	119, 452, 1069
MspI	CCGG	4 cut(s)	715, 2133, 2169, 3395
MspR9I	CCNGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
MunI	CAATTG	3 cut(s)	29, 649, 3620
Mva1269I	GAATGC	3 cut(s)	984, 2227, 2408
MvaI	CCWGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
MvnI	CGCG	2 cut(s)	2499, 4305
NdeI	CATATG	1 cut(s)	2617
NlaIV	GGNNCC	5 cut(s)	220, 1429, 2238, 2857, 3807
NmeAIII	GCCGAG	1 cut(s)	3038
NmuCI	GTSAC	5 cut(s)	661, 2071, 2419, 3417, 4169
NsbI	TGCGCA	1 cut(s)	3956
NsiI	ATGCAT	3 cut(s)	2281, 3634, 3742
NspI	RCATGY	6 cut(s)	303, 1106, 1621, 1875, 1935, 3632
PaeR7I	CTCGAG	1 cut(s)	3210
PagI	TCATGA	1 cut(s)	2916
PceI	AGGCCT	1 cut(s)	1213
PciI	ACATGT	2 cut(s)	1102, 1871
PctI	GAATGC	3 cut(s)	984, 2227, 2408
PdmI	GAANNNNTTC	2 cut(s)	1736, 3485
PfeI	GAWTC	9 cut(s)	16, 578, 830, 1024, 1732, 1958, 2872, 3532, 4149
Pfl23II	CGTACG	1 cut(s)	4306
PflFI	GACNNNGTC	1 cut(s)	3437
PfoI	TCCNGGA	2 cut(s)	3258, 4005
PleI	GAGTC	6 cut(s)	857, 2341, 2350, 2461, 3221, 3511
PmaCI	CACGTG	2 cut(s)	38, 2300
PmlI	CACGTG	2 cut(s)	38, 2300
PpsI	GAGTC	6 cut(s)	857, 2341, 2350, 2461, 3221, 3511
Ppu21I	YACGTR	3 cut(s)	38, 1136, 2300
PpuMI	RGGWCCY	2 cut(s)	1258, 3806
PscI	ACATGT	2 cut(s)	1102, 1871
PshAI	GACNNNNGTC	1 cut(s)	3811
PshBI	ATTAAT	2 cut(s)	107, 2634
Psp5II	RGGWCCY	2 cut(s)	1258, 3806
Psp6I	CCWGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
PspCI	CACGTG	2 cut(s)	38, 2300
PspEI	GGTNACC	2 cut(s)	2543, 4169
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
PspLI	CGTACG	1 cut(s)	4306
PspN4I	GGNNCC	5 cut(s)	220, 1429, 2238, 2857, 3807
PspPI	GGNCC	6 cut(s)	219, 1079, 1258, 3677, 3806, 4325
PspPPI	RGGWCCY	2 cut(s)	1258, 3806
PspXI	VCTCGAGB	1 cut(s)	3210
PsrI	GAACNNNNNNTAC	2 cut(s)	1536, 1568
PstI	CTGCAG	4 cut(s)	356, 1633, 2596, 3131
PstNI	CAGNNNCTG	1 cut(s)	3578
PsuI	RGATCY	3 cut(s)	493, 1014, 1899
PsyI	GACNNNGTC	1 cut(s)	3437
PvuII	CAGCTG	2 cut(s)	452, 1069
RseI	CAYNNNNRTG	8 cut(s)	63, 166, 1344, 1496, 2921, 3404, 4122, 4188
Sau96I	GGNCC	6 cut(s)	219, 1079, 1258, 3677, 3806, 4325
SchI	GAGTC	6 cut(s)	857, 2342, 2351, 2461, 3222, 3512
ScrFI	CCNGG	7 cut(s)	551, 2463, 3260, 3300, 3675, 3725, 4007
SduI	GDGCHC	4 cut(s)	187, 338, 2860, 2889
SexAI	ACCWGGT	1 cut(s)	3298
SfcI	CTRYAG	5 cut(s)	352, 1275, 1629, 2592, 3127
Sfr274I	CTCGAG	1 cut(s)	3210
SinI	GGWCC	5 cut(s)	219, 1258, 3677, 3806, 4325
SlaI	CTCGAG	1 cut(s)	3210
SmiMI	CAYNNNNRTG	8 cut(s)	63, 166, 1344, 1496, 2921, 3404, 4122, 4188
SmlI	CTYRAG	6 cut(s)	186, 886, 1831, 3210, 3322, 4026
SmoI	CTYRAG	6 cut(s)	186, 886, 1831, 3210, 3322, 4026
SnaBI	TACGTA	1 cut(s)	1136
SpeI	ACTAGT	1 cut(s)	736
SseBI	AGGCCT	1 cut(s)	1213
SsiI	CCGC	2 cut(s)	119, 2643
SspMI	CTAG	8 cut(s)	720, 737, 873, 1124, 1368, 2861, 3200, 4208
StuI	AGGCCT	1 cut(s)	1213
StyD4I	CCNGG	7 cut(s)	549, 2461, 3258, 3298, 3673, 3723, 4005
StyI	CCWWGG	3 cut(s)	1075, 2963, 3765
TaiI	ACGT	5 cut(s)	40, 1138, 2302, 4062, 4114
TaqI	TCGA	6 cut(s)	111, 2428, 2476, 3211, 3295, 4014
TatI	WGTACW	3 cut(s)	1934, 3177, 3936
TauI	GCSGC	2 cut(s)	122, 2646
TfiI	GAWTC	9 cut(s)	16, 578, 830, 1024, 1732, 1958, 2872, 3532, 4149
TseFI	GTSAC	5 cut(s)	661, 2071, 2419, 3417, 4169
Tsp45I	GTSAC	5 cut(s)	661, 2071, 2419, 3417, 4169
TspGWI	ACGGA	8 cut(s)	101, 240, 358, 1496, 1576, 1766, 2090, 2535
Tth111I	GACNNNGTC	1 cut(s)	3437
VpaK11BI	GGWCC	5 cut(s)	219, 1258, 3677, 3806, 4325
VspI	ATTAAT	2 cut(s)	107, 2634
XagI	CCTNNNNNAGG	1 cut(s)	1311
XapI	RAATTY	7 cut(s)	583, 795, 1505, 2113, 2326, 3091, 3917
XbaI	TCTAGA	1 cut(s)	872
XceI	RCATGY	6 cut(s)	303, 1106, 1621, 1875, 1935, 3632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073
XhoI	CTCGAG	1 cut(s)	3210
XmnI	GAANNNNTTC	2 cut(s)	1736, 3485
XspI	CTAG	8 cut(s)	720, 737, 873, 1124, 1368, 2861, 3200, 4208
ZraI	GACGTC	1 cut(s)	4060
Zsp2I	ATGCAT	3 cut(s)	2281, 3634, 3742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.