Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Reverse (-)

3851535 .. 3857578

Gene Structure 6044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGAGGTGGGAAAGGCTCCATCTTCAACCTCATCAACACCAAGCTCAAGGAGTGTTGGTTCAGAATGAGGTACATGGCCCAGGGAAGAGGTGGGGCCACACCTGCAACGCCATTAGAGAAGGGAGGTTCCTCTATGTCTTCGGTGGTTATGGCAGAGATAACTGTCAGACCAACCAAGTTCACGTCTTTGACACTGTTGCGCATACATGGAGCCAGCCAGTGATAAAAGGCACACCACCAACTCCAAGGGACAGCCACAGTTGCACCACTGTTGGTGATAATCTGTTTGTATTTGGAGGCACAGATGGGACAAACCCTCTTAAGGATTTGCATATACTCGACACTGCTTCACATACATGGATATCTCCAAGTTTAAGAGGTGAGGGGCCAGAAGCTCGTGAAGGCCATAGTGCAGCGCTCGTTGGGAGGCGCCTATTTGTCTTTGGTGGCTGTGGAAAATCGGCAAATAATGAGGAAGTCTACTACAATGATCTGTACATCTTGAATACAGAAACCTTTGCATGGAAGAAAGCTACAACATCAGGCCCGCCACCATCTCCTCGCGACAGCCATACTTGCTCATCTTCAAAGAACAAAGTGATTGTGATTGGTGGTGAAGATGGGCATGATTACTATTTGTCTGATGTCCATATTCTTGATGCAGATACTCTAGTGTGGAGGGAGCTGAACACTTCCGGCCAATCCTTGCCACCCCGAGGTGGTCATTCTACTGTTGCTTTTGGGAAGAACTTATTTGTTTTTGGGGGATTCACAGACGCACAAAGTCTATACAATGATCTCTACATGCTTGATGTTGATACTGGCGTATGGACAAAGGTGATAACTACAGGTGATGGACCTTCTGCTAGATTTTCTGTTGCTGGGGACTGTTTGGATCCTGCGAAAGGAGGTGTTCTTGTGTTTATTGGTGGTTGCAATAAAAGTCTTGAAGCACTGGATGATATGTATTACTTGAACACAGGACTTGTCAGAGAGAGTGAAAGGAGGCTTGAAAAATTATCATTGAGGAAGCAATTAAAGCTAAAGTGCCAAGAACAAAATCTCACTTCAGTTCATGACAGAGCTCTTGTTCCAGTTGGAACTGGTGCTGAAATTTTCCAGCCCACAACAGTTCCATTTTATGGCCAACCCGGTGAACAAATTATCCCATTGAATCAATCTGCGCCTGTGAGGAGGTCATTTCAAGCAAAGGTTACTGAAAGGCTGATTGATGGATACACAATTGAAACTGTTATTGATGGAAAGCCTCTCCGTGGTGTATTGTTTTCCAACAAGTCAGAGTTTAGTATTCCCGCTGCTCCTAATTCCAGTAGGAAGCGGGCGGCCAGTGAGGCTGTTGGGATAATGTCAAATGGTGGTTGTAACAGCAAGTCAAAAGATTCTAAAGGCATCAGCCAAGAGGCAATAGATCTCAGTGAGTCAGTCAATGCTCATGCAAAGGAGTCCGCATCACATGAGATTGCTCGTGGACAGGTTACTGCTAACCCTGTGCAGTTGGTTAATCCTTTGAATCAAGGAGATACTTCAACAAGTAATACTCTGCAATCAAACACCGAAGGTCTAGGAAATGACAGAACCAAGATAACAACCGGAGGACACAGTGCAGCAATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

545

Amino Acids

59.09

Weight (kDa)

6.55

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_FBX42	PF13415	21 - 120	5.2e-21	FBX42, beta-propeller domain
Kelch_HCF	PF13854	22 - 100	5.3e-09	Host cell factor, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	23 - 205	1.1e-55	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_HCF	PF13854	27 - 258	3.1e-31	Host cell factor, Kelch-repeats domain
Beta-prop_FBX42	PF13415	30 - 226	3.2e-46	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	44 - 195	4.7e-23	Attractin/LZTR1 beta-propeller
Kelch_FKB95	PF25210	78 - 185	1.1e-10	FKB95, Kelch-repeats domain
Kelch_1	PF01344	82 - 120	4.8e-08	Kelch motif
Beta-prop_ATRN-LZTR1	PF24981	108 - 235	5.8e-17	Attractin/LZTR1 beta-propeller
NANM	PF24996	131 - 228	1.9e-08	N-acetylneuraminate epimerase
Kelch_KLHDC2_KLHL20_DRC7	PF24681	135 - 361	4.2e-49	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	143 - 327	2.5e-37	FBX42, beta-propeller domain
Beta-prop_TYW4	PF13418	185 - 329	1.1e-07	tRNA wybutosine-synthesizing protein 4, beta-propeller
Beta-prop_ATRN-LZTR1	PF24981	201 - 326	2.1e-15	Attractin/LZTR1 beta-propeller
Kelch_1	PF01344	238 - 280	5.4e-07	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc16I	TGCGCA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	564
AciI	CCGC	5 cut(s)	548, 1314, 1339, 1343, 1467
AclWI	GGATC	2 cut(s)	890, 903
AcoI	YGGCCR	3 cut(s)	697, 1144, 1344
AcsI	RAATTY	1 cut(s)	1113
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	72, 497
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	7 cut(s)	322, 522, 716, 719, 905, 1142, 1274
AflII	CTTAAG	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	4 cut(s)	42, 74, 1149, 1181
AluBI	AGCT	6 cut(s)	44, 395, 533, 685, 1042, 1085
AluI	AGCT	6 cut(s)	44, 395, 533, 685, 1042, 1085
Alw21I	GWGCWC	1 cut(s)	1087
AlwI	GGATC	2 cut(s)	890, 903
Ama87I	CYCGRG	1 cut(s)	714
Aor51HI	AGCGCT	1 cut(s)	417
AoxI	GGCC	8 cut(s)	76, 94, 386, 403, 544, 697, 1144, 1344
ApeKI	GCWGC	3 cut(s)	413, 1316, 1625
ApoI	RAATTY	1 cut(s)	1113
AspLEI	GCGC	4 cut(s)	202, 418, 432, 1186
AspS9I	GGNCC	5 cut(s)	77, 94, 386, 545, 857
AsuC2I	CCSGG	1 cut(s)	1152
AsuHPI	GGTGA	6 cut(s)	287, 392, 626, 850, 863, 1166
AvaI	CYCGRG	1 cut(s)	714
AvaII	GGWCC	1 cut(s)	857
BaeI	ACNNNNGTAYC	4 cut(s)	657, 690, 810, 843
BalI	TGGCCA	1 cut(s)	1146
BamHI	GGATCC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	1087
BauI	CACGAG	2 cut(s)	396, 1485
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	1087
BbvI	GCAGC	2 cut(s)	425, 1303
BccI	CCATC	7 cut(s)	27, 299, 562, 614, 848, 1226, 1253
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	1229
BcnI	CCSGG	1 cut(s)	1152
BfaI	CTAG	3 cut(s)	671, 867, 1583
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	2 cut(s)	419, 433
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	1229
BglI	GCCNNNNNGGC	1 cut(s)	1352
BglII	AGATCT	1 cut(s)	1429
BisI	GCNGC	4 cut(s)	414, 1317, 1344, 1626
BlsI	GCNGC	4 cut(s)	415, 1318, 1345, 1627
Bme1390I	CCNGG	2 cut(s)	81, 1152
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	5 cut(s)	77, 94, 386, 545, 857
BmiI	GGNNCC	7 cut(s)	17, 95, 128, 212, 387, 431, 897
BmrFI	CCNGG	2 cut(s)	81, 1152
BmsI	GCATC	3 cut(s)	649, 1419, 1478
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	1152
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	5 cut(s)	79, 80, 245, 715, 1273
BsaWI	WCCGGW	1 cut(s)	1610
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	7 cut(s)	322, 522, 716, 719, 905, 1142, 1274
Bse1I	ACTGG	7 cut(s)	218, 826, 960, 1094, 1108, 1329, 1347
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	5 cut(s)	79, 80, 245, 715, 1273
BseGI	GGATG	1 cut(s)	964
BseLI	CCNNNNNNNGG	7 cut(s)	322, 522, 716, 719, 905, 1142, 1274
BseMII	CTCAG	1 cut(s)	1447
BseNI	ACTGG	7 cut(s)	218, 826, 960, 1094, 1108, 1329, 1347
BseRI	GAGGAG	2 cut(s)	549, 1207
BseXI	GCAGC	2 cut(s)	425, 1303
BseYI	CCCAGC	1 cut(s)	881
BsgI	GTGCAG	2 cut(s)	432, 1532
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	8 cut(s)	78, 96, 388, 405, 546, 699, 1146, 1346
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	1087
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	3 cut(s)	696, 1152, 1611
BslFI	GGGAC	3 cut(s)	263, 322, 899
BslI	CCNNNNNNNGG	7 cut(s)	322, 522, 716, 719, 905, 1142, 1274
BsmFI	GGGAC	3 cut(s)	263, 322, 899
BsnI	GGCC	8 cut(s)	78, 96, 388, 405, 546, 699, 1146, 1346
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	1087
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	490, 796, 895, 1429
Bsp68I	TCGCGA	1 cut(s)	564
BspACI	CCGC	5 cut(s)	548, 1314, 1339, 1343, 1467
BspANI	GGCC	8 cut(s)	78, 96, 388, 405, 546, 699, 1146, 1346
BspCNI	CTCAG	1 cut(s)	1446
BspFNI	CGCG	1 cut(s)	564
BspHI	TCATGA	1 cut(s)	1075
BspLI	GGNNCC	7 cut(s)	17, 95, 128, 212, 387, 431, 897
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	2 cut(s)	890, 903
BspT107I	GGYRCC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	7 cut(s)	218, 826, 960, 1094, 1108, 1329, 1347
BssECI	CCNNGG	5 cut(s)	79, 80, 245, 715, 1273
BssMI	GATC	4 cut(s)	490, 796, 895, 1429
BssNI	GRCGYC	1 cut(s)	430
BssSI	CACGAG	2 cut(s)	396, 1485
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	2 cut(s)	396, 1485
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	9 cut(s)	164, 196, 260, 271, 733, 890, 1132, 1252, 1622
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	215, 548, 1341
BstDEI	CTNAG	1 cut(s)	1433
BstDSI	CCRYGG	1 cut(s)	1273
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	1 cut(s)	964
BstFNI	CGCG	1 cut(s)	564
BstH2I	RGCGCY	2 cut(s)	419, 433
BstHHI	GCGC	4 cut(s)	202, 418, 432, 1186
BstKTI	GATC	4 cut(s)	493, 799, 898, 1432
BstMBI	GATC	4 cut(s)	490, 796, 895, 1429
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 261, 576, 1039, 1352
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	2 cut(s)	79, 1150
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	425, 1303
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	2 cut(s)	895, 1429
BstYI	RGATCY	2 cut(s)	895, 1429
BsuI	GTATCC	1 cut(s)	1229
BsuRI	GGCC	8 cut(s)	78, 96, 388, 405, 546, 699, 1146, 1346
BtgI	CCRYGG	1 cut(s)	1273
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	964
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	8 cut(s)	192, 225, 267, 342, 953, 1354, 1441, 1627
BtuMI	TCGCGA	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	215, 548, 1341
CciI	TCATGA	1 cut(s)	1075
CfoI	GCGC	4 cut(s)	202, 418, 432, 1186
Cfr13I	GGNCC	5 cut(s)	77, 94, 386, 545, 857
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	2 cut(s)	71, 496
CviAII	CATG	9 cut(s)	74, 207, 357, 522, 626, 805, 1076, 1454, 1475
CviQI	GTAC	2 cut(s)	71, 496
DdeI	CTNAG	1 cut(s)	1433
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	4 cut(s)	492, 798, 897, 1431
DpnII	GATC	4 cut(s)	490, 796, 895, 1429
EaeI	YGGCCR	3 cut(s)	697, 1144, 1344
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	1087
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	857
Eco47III	AGCGCT	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	1085
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	1085
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	1087
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	9 cut(s)	77, 210, 360, 525, 629, 808, 1079, 1457, 1478
FaqI	GGGAC	3 cut(s)	263, 322, 899
FatI	CATG	9 cut(s)	73, 206, 356, 521, 625, 804, 1075, 1453, 1474
FauI	CCCGC	3 cut(s)	555, 1321, 1332
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	414, 1317, 1344, 1626
FokI	GGATG	1 cut(s)	971
FriOI	GRGCYC	1 cut(s)	1087
Fsp4HI	GCNGC	4 cut(s)	414, 1317, 1344, 1626
FspBI	CTAG	3 cut(s)	671, 867, 1583
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	4 cut(s)	201, 417, 431, 1185
GluI	GCNGC	4 cut(s)	414, 1317, 1344, 1626
GsaI	CCCAGC	1 cut(s)	885
HaeII	RGCGCY	2 cut(s)	419, 433
HaeIII	GGCC	8 cut(s)	78, 96, 388, 405, 546, 699, 1146, 1346
HapII	CCGG	3 cut(s)	696, 1152, 1611
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	4 cut(s)	202, 418, 432, 1186
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	9 cut(s)	77, 210, 360, 525, 629, 808, 1079, 1457, 1478
Hin6I	GCGC	4 cut(s)	200, 416, 430, 1184
HinP1I	GCGC	4 cut(s)	200, 416, 430, 1184
HinfI	GANTC	6 cut(s)	768, 1174, 1400, 1439, 1463, 1531
HpaII	CCGG	3 cut(s)	696, 1152, 1611
HphI	GGTGA	6 cut(s)	287, 392, 626, 850, 863, 1166
Hpy166II	GTNNAC	4 cut(s)	181, 481, 1157, 1490
Hpy188I	TCNGA	5 cut(s)	63, 168, 643, 992, 1300
Hpy188III	TCNNGA	6 cut(s)	398, 502, 563, 656, 947, 1076
Hpy8I	GTNNAC	4 cut(s)	181, 481, 1157, 1490
HpyAV	CCTTC	4 cut(s)	113, 395, 870, 1571
HpyCH4III	ACNGT	9 cut(s)	164, 196, 260, 271, 733, 890, 1132, 1252, 1622
HpyCH4IV	ACGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 261, 576, 1039, 1352
HpyF3I	CTNAG	1 cut(s)	1433
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	9 cut(s)	77, 210, 360, 525, 629, 808, 1079, 1457, 1478
HspAI	GCGC	4 cut(s)	200, 416, 430, 1184
KasI	GGCGCC	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	490, 796, 895, 1429
LmnI	GCTCC	4 cut(s)	21, 210, 682, 1324
Lsp1109I	GCAGC	2 cut(s)	425, 1303
LweI	GCATC	3 cut(s)	649, 1419, 1478
MaeI	CTAG	3 cut(s)	671, 867, 1583
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	1213, 1382, 1495
MalI	GATC	4 cut(s)	492, 798, 897, 1431
MboI	GATC	4 cut(s)	490, 796, 895, 1429
MboII	GAAGA	7 cut(s)	14, 97, 130, 538, 576, 629, 757
MfeI	CAATTG	1 cut(s)	1242
MflI	RGATCY	2 cut(s)	895, 1429
MhlI	GDGCHC	1 cut(s)	1087
MlsI	TGGCCA	1 cut(s)	1146
MluCI	AATT	6 cut(s)	1016, 1034, 1113, 1161, 1242, 1324
MluNI	TGGCCA	1 cut(s)	1146
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	1448, 1472
MmeI	TCCRAC	2 cut(s)	1078, 1314
Mox20I	TGGCCA	1 cut(s)	1146
MscI	TGGCCA	1 cut(s)	1146
MseI	TTAA	5 cut(s)	321, 374, 1037, 1521, 1636
MslI	CAYNNNNRTG	1 cut(s)	355
Msp20I	TGGCCA	1 cut(s)	1146
MspA1I	CMGCKG	1 cut(s)	1316
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	3 cut(s)	696, 1152, 1611
MspR9I	CCNGG	2 cut(s)	81, 1152
MunI	CAATTG	1 cut(s)	1242
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	5 cut(s)	102, 261, 576, 1039, 1352
NarI	GGCGCC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	1152
NdeII	GATC	4 cut(s)	490, 796, 895, 1429
NlaIII	CATG	9 cut(s)	77, 210, 360, 525, 629, 808, 1079, 1457, 1478
NlaIV	GGNNCC	7 cut(s)	17, 95, 128, 212, 387, 431, 897
NruI	TCGCGA	1 cut(s)	564
NsbI	TGCGCA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	808
PagI	TCATGA	1 cut(s)	1075
PaqCI	CACCTGC	1 cut(s)	110
PasI	CCCWGGG	1 cut(s)	80
PfeI	GAWTC	4 cut(s)	768, 1174, 1400, 1531
PflMI	CCANNNNNTGG	1 cut(s)	1142
PkrI	GCNGC	4 cut(s)	415, 1318, 1345, 1627
PleI	GAGTC	2 cut(s)	1447, 1471
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	2 cut(s)	1447, 1471
Psp124BI	GAGCTC	1 cut(s)	1087
Psp6I	CCWGG	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	7 cut(s)	17, 95, 128, 212, 387, 431, 897
PspPI	GGNCC	5 cut(s)	77, 94, 386, 545, 857
PsuI	RGATCY	2 cut(s)	895, 1429
RruI	TCGCGA	1 cut(s)	564
RsaI	GTAC	2 cut(s)	72, 497
RsaNI	GTAC	2 cut(s)	71, 496
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	1087
SaqAI	TTAA	5 cut(s)	321, 374, 1037, 1521, 1636
SatI	GCNGC	4 cut(s)	414, 1317, 1344, 1626
Sau3AI	GATC	4 cut(s)	490, 796, 895, 1429
Sau96I	GGNCC	5 cut(s)	77, 94, 386, 545, 857
SchI	GAGTC	2 cut(s)	1448, 1472
ScrFI	CCNGG	2 cut(s)	81, 1152
SduI	GDGCHC	1 cut(s)	1087
SfaNI	GCATC	3 cut(s)	649, 1419, 1478
SfcI	CTRYAG	1 cut(s)	846
SfoI	GGCGCC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	857
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	45, 320
SmoI	CTYRAG	2 cut(s)	45, 320
Sse9I	AATT	6 cut(s)	1016, 1034, 1113, 1161, 1242, 1324
SsiI	CCGC	5 cut(s)	548, 1314, 1339, 1343, 1467
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	3 cut(s)	671, 867, 1583
SstI	GAGCTC	1 cut(s)	1087
StyD4I	CCNGG	2 cut(s)	79, 1150
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	9 cut(s)	164, 196, 260, 271, 733, 890, 1132, 1252, 1622
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	339
TasI	AATT	6 cut(s)	1016, 1034, 1113, 1161, 1242, 1324
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	1346
TfiI	GAWTC	4 cut(s)	768, 1174, 1400, 1531
Tru1I	TTAA	5 cut(s)	321, 374, 1037, 1521, 1636
Tru9I	TTAA	5 cut(s)	321, 374, 1037, 1521, 1636
TscAI	CASTG	8 cut(s)	199, 225, 274, 349, 960, 1354, 1441, 1627
TseI	GCWGC	3 cut(s)	413, 1316, 1625
TspDTI	ATGAA	1 cut(s)	1064
TspGWI	ACGGA	1 cut(s)	1262
TspRI	CASTG	8 cut(s)	199, 225, 274, 349, 960, 1354, 1441, 1627
Van91I	CCANNNNNTGG	1 cut(s)	1142
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	857
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	1 cut(s)	1113
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	3 cut(s)	671, 867, 1583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.