DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020 |
| fragaria_vesca | FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 |
| malus_domestica | MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1 |
| prunus_persica | Prupe.5G089300_v2.0.a1 |
| pyrus_communis | pycom04g06250 |
| rosa_chinensis | RchiOBHm_Chr7g0199481 |
| rosa_laevigata | RLG00000003790 |
| rosa_multiflora | Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00256700 |
| rosa_rugosa | Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500 |
| rosa_samantha | Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200 |
| rosa_wichuraiana | Rw7G015760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1019 |
| Acc16I | TGCGCA | 2 cut(s) | 594, 4019 |
| Acc36I | ACCTGC | 2 cut(s) | 586, 1019 |
| Acc65I | GGTACC | 1 cut(s) | 1370 |
| AccB1I | GGYRCC | 3 cut(s) | 185, 1004, 1370 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1256 |
| AccBSI | CCGCTC | 2 cut(s) | 1368, 3303 |
| AccI | GTMKAC | 2 cut(s) | 934, 1962 |
| AccII | CGCG | 2 cut(s) | 705, 4293 |
| AciI | CCGC | 9 cut(s) | 498, 742, 968, 1368, 2069, 2434, 3303, 4291, 4293 |
| AclI | AACGTT | 1 cut(s) | 2881 |
| AclWI | GGATC | 8 cut(s) | 131, 333, 617, 809, 851, 899, 1414, 3496 |
| AcoI | YGGCCR | 1 cut(s) | 4288 |
| AcsI | RAATTY | 8 cut(s) | 579, 628, 713, 1839, 2050, 2190, 2819, 3536 |
| AcuI | CTGAAG | 8 cut(s) | 120, 1659, 1950, 2634, 2699, 2963, 3069, 3873 |
| AcyI | GRCGYC | 1 cut(s) | 3805 |
| AfaI | GTAC | 8 cut(s) | 1077, 1372, 1713, 1796, 2074, 2533, 4182, 4214 |
| AfeI | AGCGCT | 1 cut(s) | 2527 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 146, 1256, 1573, 1708, 2005, 2868, 3699, 3719 |
| AflIII | ACRYGT | 1 cut(s) | 3078 |
| AhlI | ACTAGT | 1 cut(s) | 2170 |
| AjiI | CACGTC | 1 cut(s) | 4002 |
| AjnI | CCWGG | 7 cut(s) | 372, 769, 1422, 1701, 2398, 4114, 4272 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 643, 675, 2672, 2704 |
| AleI | CACNNNNGTG | 1 cut(s) | 893 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3486, 3518, 4104, 4136 |
| Alw21I | GWGCWC | 6 cut(s) | 176, 381, 2447, 2632, 3461, 4237 |
| Alw26I | GTCTC | 7 cut(s) | 1128, 1691, 1783, 2932, 3141, 3999, 4031 |
| Alw44I | GTGCAC | 1 cut(s) | 2443 |
| AlwI | GGATC | 8 cut(s) | 131, 333, 617, 809, 851, 899, 1414, 3496 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1217 |
| Ama87I | CYCGRG | 2 cut(s) | 3144, 3626 |
| Aor51HI | AGCGCT | 1 cut(s) | 2527 |
| AoxI | GGCC | 4 cut(s) | 1118, 1154, 1528, 4288 |
| ApaLI | GTGCAC | 1 cut(s) | 2443 |
| ApoI | RAATTY | 8 cut(s) | 579, 628, 713, 1839, 2050, 2190, 2819, 3536 |
| AseI | ATTAAT | 1 cut(s) | 1356 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 84, 276, 3437 |
| Asp718I | GGTACC | 1 cut(s) | 1370 |
| AspA2I | CCTAGG | 1 cut(s) | 140 |
| AspLEI | GCGC | 7 cut(s) | 372, 390, 595, 1216, 2528, 4020, 4142 |
| AspS9I | GGNCC | 5 cut(s) | 1529, 1706, 2842, 4112, 4295 |
| AsuC2I | CCSGG | 3 cut(s) | 3627, 3628, 3678 |
| AsuHPI | GGTGA | 9 cut(s) | 914, 1271, 1283, 1488, 2476, 3166, 3211, 3278, 4136 |
| AvaI | CYCGRG | 2 cut(s) | 3144, 3626 |
| AvaII | GGWCC | 4 cut(s) | 1706, 2842, 4112, 4295 |
| AvrII | CCTAGG | 1 cut(s) | 140 |
| BaeGI | GKGCMC | 2 cut(s) | 2447, 4165 |
| BanI | GGYRCC | 3 cut(s) | 185, 1004, 1370 |
| BanII | GRGCYC | 1 cut(s) | 3765 |
| BauI | CACGAG | 1 cut(s) | 1976 |
| BbsI | GAAGAC | 2 cut(s) | 2642, 2764 |
| Bbv12I | GWGCWC | 6 cut(s) | 176, 381, 2447, 2632, 3461, 4237 |
| BceAI | ACGGC | 4 cut(s) | 1422, 2282, 3647, 4089 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2018, 2052 |
| BciT130I | CCWGG | 7 cut(s) | 374, 771, 1424, 1703, 2400, 4116, 4274 |
| BciVI | GTATCC | 3 cut(s) | 239, 3353, 4035 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcnI | CCSGG | 3 cut(s) | 3627, 3628, 3678 |
| BcoDI | GTCTC | 7 cut(s) | 1128, 1691, 1783, 2932, 3141, 3999, 4031 |
| BcuI | ACTAGT | 1 cut(s) | 2170 |
| BfaI | CTAG | 5 cut(s) | 141, 2171, 2529, 2633, 2976 |
| BfmI | CTRYAG | 1 cut(s) | 1094 |
| BfoI | RGCGCY | 4 cut(s) | 373, 1217, 2529, 4143 |
| BfuAI | ACCTGC | 2 cut(s) | 586, 1019 |
| BfuI | GTATCC | 3 cut(s) | 239, 3353, 4035 |
| BlnI | CCTAGG | 1 cut(s) | 140 |
| BlpI | GCTNAGC | 1 cut(s) | 792 |
| Bme18I | GGWCC | 4 cut(s) | 1706, 2842, 4112, 4295 |
| BmeT110I | CYCGRG | 2 cut(s) | 3144, 3626 |
| BmgBI | CACGTC | 1 cut(s) | 4002 |
| BmgT120I | GGNCC | 5 cut(s) | 1529, 1706, 2842, 4112, 4295 |
| BmiI | GGNNCC | 6 cut(s) | 187, 1006, 1372, 1707, 3661, 3817 |
| BmrI | ACTGGG | 1 cut(s) | 84 |
| BmsI | GCATC | 9 cut(s) | 948, 1032, 1074, 1096, 1297, 2008, 2937, 3096, 3593 |
| BmuI | ACTGGG | 1 cut(s) | 84 |
| BpiI | GAAGAC | 2 cut(s) | 2642, 2764 |
| BpmI | CTGGAG | 5 cut(s) | 1445, 1581, 2502, 3678, 4137 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1322, 1734 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 792 |
| BpuEI | CTTGAG | 6 cut(s) | 1801, 2084, 3944, 3953, 3971, 4259 |
| BpuMI | CCSGG | 3 cut(s) | 3627, 3628, 3678 |
| Bsa29I | ATCGAT | 1 cut(s) | 1163 |
| BsaBI | GATNNNNATC | 2 cut(s) | 310, 621 |
| BsaHI | GRCGYC | 1 cut(s) | 3805 |
| BsaI | GGTCTC | 1 cut(s) | 3999 |
| BsaWI | WCCGGW | 2 cut(s) | 1708, 3263 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1125, 1155, 1596, 1626, 3525, 3555 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 146, 1256, 1573, 1708, 2005, 2868, 3699, 3719 |
| Bse118I | RCCGGY | 1 cut(s) | 1498 |
| Bse1I | ACTGG | 5 cut(s) | 29, 79, 232, 1546, 2642 |
| Bse3DI | GCAATG | 7 cut(s) | 633, 781, 1182, 1489, 1696, 3472, 3561 |
| Bse8I | GATNNNNATC | 2 cut(s) | 310, 621 |
| BseBI | CCWGG | 7 cut(s) | 374, 771, 1424, 1703, 2400, 4116, 4274 |
| BseCI | ATCGAT | 1 cut(s) | 1163 |
| BseJI | GATNNNNATC | 2 cut(s) | 310, 621 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 146, 1256, 1573, 1708, 2005, 2868, 3699, 3719 |
| BseMI | GCAATG | 7 cut(s) | 633, 781, 1182, 1489, 1696, 3472, 3561 |
| BseNI | ACTGG | 5 cut(s) | 29, 79, 232, 1546, 2642 |
| BseRI | GAGGAG | 5 cut(s) | 2848, 2944, 2947, 2950, 3702 |
| BseSI | GKGCMC | 2 cut(s) | 2447, 4165 |
| BsgI | GTGCAG | 1 cut(s) | 2156 |
| Bsh1236I | CGCG | 2 cut(s) | 705, 4293 |
| BshFI | GGCC | 4 cut(s) | 1120, 1156, 1530, 4290 |
| BshNI | GGYRCC | 3 cut(s) | 185, 1004, 1370 |
| BshVI | ATCGAT | 1 cut(s) | 1163 |
| BsiHKAI | GWGCWC | 6 cut(s) | 176, 381, 2447, 2632, 3461, 4237 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3144, 3626 |
| BsiSI | CCGG | 5 cut(s) | 1499, 1709, 3264, 3627, 3677 |
| BslFI | GGGAC | 4 cut(s) | 632, 1929, 2416, 3736 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 146, 1256, 1573, 1708, 2005, 2868, 3699, 3719 |
| BsmAI | GTCTC | 7 cut(s) | 1128, 1691, 1783, 2932, 3141, 3999, 4031 |
| BsmBI | CGTCTC | 1 cut(s) | 4031 |
| BsmFI | GGGAC | 4 cut(s) | 632, 1929, 2416, 3736 |
| BsmI | GAATGC | 1 cut(s) | 2950 |
| BsnI | GGCC | 4 cut(s) | 1120, 1156, 1530, 4290 |
| Bso31I | GGTCTC | 1 cut(s) | 3999 |
| BsoBI | CYCGRG | 2 cut(s) | 3144, 3626 |
| Bsp1286I | GDGCHC | 8 cut(s) | 176, 381, 2447, 2632, 3461, 3765, 4165, 4237 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 792 |
| Bsp19I | CCATGG | 1 cut(s) | 2891 |
| BspACI | CCGC | 9 cut(s) | 498, 742, 968, 1368, 2069, 2434, 3303, 4291, 4293 |
| BspANI | GGCC | 4 cut(s) | 1120, 1156, 1530, 4290 |
| BspDI | ATCGAT | 1 cut(s) | 1163 |
| BspFNI | CGCG | 2 cut(s) | 705, 4293 |
| BspHI | TCATGA | 2 cut(s) | 2014, 3394 |
| BspLI | GGNNCC | 6 cut(s) | 187, 1006, 1372, 1707, 3661, 3817 |
| BspMAI | CTGCAG | 1 cut(s) | 1098 |
| BspMI | ACCTGC | 2 cut(s) | 586, 1019 |
| BspPI | GGATC | 8 cut(s) | 131, 333, 617, 809, 851, 899, 1414, 3496 |
| BspQI | GCTCTTC | 1 cut(s) | 18 |
| BspT107I | GGYRCC | 3 cut(s) | 185, 1004, 1370 |
| BspTNI | GGTCTC | 1 cut(s) | 3999 |
| BsrBI | CCGCTC | 2 cut(s) | 1368, 3303 |
| BsrDI | GCAATG | 7 cut(s) | 633, 781, 1182, 1489, 1696, 3472, 3561 |
| BsrFI | RCCGGY | 1 cut(s) | 1498 |
| BsrI | ACTGG | 5 cut(s) | 29, 79, 232, 1546, 2642 |
| BssAI | RCCGGY | 1 cut(s) | 1498 |
| BssNAI | GTATAC | 1 cut(s) | 935 |
| BssNI | GRCGYC | 1 cut(s) | 3805 |
| BssSI | CACGAG | 1 cut(s) | 1976 |
| BssT1I | CCWWGG | 8 cut(s) | 140, 336, 2152, 2787, 2891, 3555, 3651, 3693 |
| Bst1107I | GTATAC | 1 cut(s) | 935 |
| Bst2BI | CACGAG | 1 cut(s) | 1976 |
| Bst2UI | CCWGG | 7 cut(s) | 374, 771, 1424, 1703, 2400, 4116, 4274 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 1926 |
| BstACI | GRCGYC | 1 cut(s) | 3805 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 396, 1465, 2627, 4015 |
| BstC8I | GCNNGC | 9 cut(s) | 124, 496, 723, 1562, 1728, 1869, 3609, 3634, 3731 |
| BstDSI | CCRYGG | 4 cut(s) | 2298, 2891, 3663, 4291 |
| BstEII | GGTNACC | 1 cut(s) | 2896 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| BstFNI | CGCG | 2 cut(s) | 705, 4293 |
| BstH2I | RGCGCY | 4 cut(s) | 373, 1217, 2529, 4143 |
| BstHHI | GCGC | 7 cut(s) | 372, 390, 595, 1216, 2528, 4020, 4142 |
| BstMAI | GTCTC | 7 cut(s) | 1128, 1691, 1783, 2932, 3141, 3999, 4031 |
| BstNI | CCWGG | 7 cut(s) | 374, 771, 1424, 1703, 2400, 4116, 4274 |
| BstPI | GGTNACC | 1 cut(s) | 2896 |
| BstSFI | CTRYAG | 1 cut(s) | 1094 |
| BstSLI | GKGCMC | 2 cut(s) | 2447, 4165 |
| BstUI | CGCG | 2 cut(s) | 705, 4293 |
| BstV2I | GAAGAC | 2 cut(s) | 2642, 2764 |
| BstX2I | RGATCY | 1 cut(s) | 325 |
| BstYI | RGATCY | 1 cut(s) | 325 |
| BstZ17I | GTATAC | 1 cut(s) | 935 |
| Bsu15I | ATCGAT | 1 cut(s) | 1163 |
| BsuI | GTATCC | 3 cut(s) | 239, 3353, 4035 |
| BsuRI | GGCC | 4 cut(s) | 1120, 1156, 1530, 4290 |
| BsuTUI | ATCGAT | 1 cut(s) | 1163 |
| BtgI | CCRYGG | 4 cut(s) | 2298, 2891, 3663, 4291 |
| BtgZI | GCGATG | 2 cut(s) | 686, 3579 |
| BtrI | CACGTC | 1 cut(s) | 4002 |
| BtsI | GCAGTG | 2 cut(s) | 2445, 2719 |
| BtsIMutI | CAGTG | 9 cut(s) | 13, 132, 176, 877, 928, 2445, 2632, 2719, 3090 |
| BveI | ACCTGC | 2 cut(s) | 586, 1019 |
| Cac8I | GCNNGC | 9 cut(s) | 124, 496, 723, 1562, 1728, 1869, 3609, 3634, 3731 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1217 |
| CciI | TCATGA | 2 cut(s) | 2014, 3394 |
| CfoI | GCGC | 7 cut(s) | 372, 390, 595, 1216, 2528, 4020, 4142 |
| Cfr10I | RCCGGY | 1 cut(s) | 1498 |
| Cfr13I | GGNCC | 5 cut(s) | 1529, 1706, 2842, 4112, 4295 |
| Cfr42I | CCGCGG | 1 cut(s) | 4294 |
| Cfr9I | CCCGGG | 1 cut(s) | 3626 |
| ClaI | ATCGAT | 1 cut(s) | 1163 |
| CseI | GACGC | 1 cut(s) | 3813 |
| Csp6I | GTAC | 8 cut(s) | 1076, 1371, 1712, 1795, 2073, 2532, 4181, 4213 |
| CviQI | GTAC | 8 cut(s) | 1076, 1371, 1712, 1795, 2073, 2532, 4181, 4213 |
| DraI | TTTAAA | 1 cut(s) | 469 |
| EaeI | YGGCCR | 1 cut(s) | 4288 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 1926 |
| EarI | CTCTTC | 2 cut(s) | 18, 1926 |
| Eco130I | CCWWGG | 8 cut(s) | 140, 336, 2152, 2787, 2891, 3555, 3651, 3693 |
| Eco147I | AGGCCT | 2 cut(s) | 1120, 1156 |
| Eco24I | GRGCYC | 1 cut(s) | 3765 |
| Eco31I | GGTCTC | 1 cut(s) | 3999 |
| Eco32I | GATATC | 2 cut(s) | 96, 3982 |
| Eco47I | GGWCC | 4 cut(s) | 1706, 2842, 4112, 4295 |
| Eco47III | AGCGCT | 1 cut(s) | 2527 |
| Eco57I | CTGAAG | 8 cut(s) | 120, 1659, 1950, 2634, 2699, 2963, 3069, 3873 |
| Eco88I | CYCGRG | 2 cut(s) | 3144, 3626 |
| Eco91I | GGTNACC | 1 cut(s) | 2896 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| EcoO65I | GGTNACC | 1 cut(s) | 2896 |
| EcoRI | GAATTC | 2 cut(s) | 579, 2190 |
| EcoRII | CCWGG | 7 cut(s) | 372, 769, 1422, 1701, 2398, 4114, 4272 |
| EcoRV | GATATC | 2 cut(s) | 96, 3982 |
| EcoT14I | CCWWGG | 8 cut(s) | 140, 336, 2152, 2787, 2891, 3555, 3651, 3693 |
| EcoT22I | ATGCAT | 5 cut(s) | 723, 963, 1047, 2476, 2952 |
| EcoT38I | GRGCYC | 1 cut(s) | 3765 |
| ErhI | CCWWGG | 8 cut(s) | 140, 336, 2152, 2787, 2891, 3555, 3651, 3693 |
| Esp3I | CGTCTC | 1 cut(s) | 4031 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1305, 1337, 2672, 2704, 2997, 3029 |
| FaqI | GGGAC | 4 cut(s) | 632, 1929, 2416, 3736 |
| FauI | CCCGC | 2 cut(s) | 2062, 2427 |
| FauNDI | CATATG | 1 cut(s) | 2476 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FblI | GTMKAC | 2 cut(s) | 934, 1962 |
| FriOI | GRGCYC | 1 cut(s) | 3765 |
| FspBI | CTAG | 5 cut(s) | 141, 2171, 2529, 2633, 2976 |
| FspI | TGCGCA | 2 cut(s) | 594, 4019 |
| GlaI | GCGC | 7 cut(s) | 371, 389, 594, 1215, 2527, 4019, 4141 |
| GsuI | CTGGAG | 5 cut(s) | 1445, 1581, 2502, 3678, 4137 |
| HaeII | RGCGCY | 4 cut(s) | 373, 1217, 2529, 4143 |
| HaeIII | GGCC | 4 cut(s) | 1120, 1156, 1530, 4290 |
| HapII | CCGG | 5 cut(s) | 1499, 1709, 3264, 3627, 3677 |
| HgaI | GACGC | 1 cut(s) | 3813 |
| HhaI | GCGC | 7 cut(s) | 372, 390, 595, 1216, 2528, 4020, 4142 |
| Hin1I | GRCGYC | 1 cut(s) | 3805 |
| Hin6I | GCGC | 7 cut(s) | 370, 388, 593, 1214, 2526, 4018, 4140 |
| HinP1I | GCGC | 7 cut(s) | 370, 388, 593, 1214, 2526, 4018, 4140 |
| HincII | GTYRAC | 2 cut(s) | 1963, 2579 |
| HindII | GTYRAC | 2 cut(s) | 1963, 2579 |
| HindIII | AAGCTT | 2 cut(s) | 2417, 2750 |
| HinfI | GANTC | 9 cut(s) | 347, 659, 674, 973, 1444, 1684, 1808, 1936, 2279 |
| HpaII | CCGG | 5 cut(s) | 1499, 1709, 3264, 3627, 3677 |
| HphI | GGTGA | 9 cut(s) | 914, 1271, 1283, 1488, 2476, 3166, 3211, 3278, 4136 |
| Hpy166II | GTNNAC | 7 cut(s) | 935, 1078, 1963, 2445, 2579, 3269, 3667 |
| Hpy8I | GTNNAC | 7 cut(s) | 935, 1078, 1963, 2445, 2579, 3269, 3667 |
| Hpy99I | CGWCG | 1 cut(s) | 3807 |
| HpyCH4IV | ACGT | 6 cut(s) | 58, 2881, 3080, 3915, 4001, 4040 |
| HpySE526I | ACGT | 6 cut(s) | 58, 2881, 3080, 3915, 4001, 4040 |
| Hsp92I | GRCGYC | 1 cut(s) | 3805 |
| HspAI | GCGC | 7 cut(s) | 370, 388, 593, 1214, 2526, 4018, 4140 |
| KpnI | GGTACC | 1 cut(s) | 1374 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| KspI | CCGCGG | 1 cut(s) | 4294 |
| LguI | GCTCTTC | 1 cut(s) | 18 |
| LmnI | GCTCC | 9 cut(s) | 376, 385, 1327, 1519, 1569, 1600, 1624, 3659, 3903 |
| LweI | GCATC | 9 cut(s) | 948, 1032, 1074, 1096, 1297, 2008, 2937, 3096, 3593 |
| MaeI | CTAG | 5 cut(s) | 141, 2171, 2529, 2633, 2976 |
| MaeII | ACGT | 6 cut(s) | 58, 2881, 3080, 3915, 4001, 4040 |
| MbiI | CCGCTC | 2 cut(s) | 1368, 3303 |
| MfeI | CAATTG | 1 cut(s) | 1349 |
| MflI | RGATCY | 1 cut(s) | 325 |
| MhlI | GDGCHC | 8 cut(s) | 176, 381, 2447, 2632, 3461, 3765, 4165, 4237 |
| MlyI | GAGTC | 3 cut(s) | 1693, 1802, 2288 |
| Mph1103I | ATGCAT | 5 cut(s) | 723, 963, 1047, 2476, 2952 |
| MroXI | GAANNNNTTC | 3 cut(s) | 84, 276, 3437 |
| MslI | CAYNNNNRTG | 3 cut(s) | 893, 1287, 2338 |
| MspA1I | CMGCKG | 4 cut(s) | 742, 1888, 3133, 4293 |
| MspI | CCGG | 5 cut(s) | 1499, 1709, 3264, 3627, 3677 |
| MunI | CAATTG | 1 cut(s) | 1349 |
| Mva1269I | GAATGC | 1 cut(s) | 2950 |
| MvaI | CCWGG | 7 cut(s) | 374, 771, 1424, 1703, 2400, 4116, 4274 |
| MvnI | CGCG | 2 cut(s) | 705, 4293 |
| NciI | CCSGG | 3 cut(s) | 3627, 3628, 3678 |
| NcoI | CCATGG | 1 cut(s) | 2891 |
| NdeI | CATATG | 1 cut(s) | 2476 |
| NlaIV | GGNNCC | 6 cut(s) | 187, 1006, 1372, 1707, 3661, 3817 |
| NmuCI | GTSAC | 5 cut(s) | 130, 706, 1948, 1973, 3369 |
| NsbI | TGCGCA | 2 cut(s) | 594, 4019 |
| NsiI | ATGCAT | 5 cut(s) | 723, 963, 1047, 2476, 2952 |
| OliI | CACNNNNGTG | 1 cut(s) | 893 |
| PaeI | GCATGC | 3 cut(s) | 725, 1564, 1730 |
| PaeR7I | CTCGAG | 1 cut(s) | 3144 |
| PagI | TCATGA | 2 cut(s) | 2014, 3394 |
| PaqCI | CACCTGC | 1 cut(s) | 1019 |
| PceI | AGGCCT | 2 cut(s) | 1120, 1156 |
| PciSI | GCTCTTC | 1 cut(s) | 18 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 2950 |
| PdmI | GAANNNNTTC | 3 cut(s) | 84, 276, 3437 |
| PfeI | GAWTC | 6 cut(s) | 347, 659, 674, 973, 1444, 1936 |
| PflFI | GACNNNGTC | 1 cut(s) | 2728 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1256 |
| PfoI | TCCNGGA | 1 cut(s) | 1422 |
| PleI | GAGTC | 3 cut(s) | 1692, 1802, 2287 |
| PpsI | GAGTC | 3 cut(s) | 1692, 1802, 2287 |
| PshBI | ATTAAT | 1 cut(s) | 1356 |
| Psp1406I | AACGTT | 1 cut(s) | 2881 |
| Psp6I | CCWGG | 7 cut(s) | 372, 769, 1422, 1701, 2398, 4114, 4272 |
| PspEI | GGTNACC | 1 cut(s) | 2896 |
| PspGI | CCWGG | 7 cut(s) | 372, 769, 1422, 1701, 2398, 4114, 4272 |
| PspN4I | GGNNCC | 6 cut(s) | 187, 1006, 1372, 1707, 3661, 3817 |
| PspPI | GGNCC | 5 cut(s) | 1529, 1706, 2842, 4112, 4295 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 400, 432, 3956, 3988 |
| PstI | CTGCAG | 1 cut(s) | 1098 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1217 |
| PsuI | RGATCY | 1 cut(s) | 325 |
| PsyI | GACNNNGTC | 1 cut(s) | 2728 |
| PvuII | CAGCTG | 2 cut(s) | 1888, 3133 |
| RsaI | GTAC | 8 cut(s) | 1077, 1372, 1713, 1796, 2074, 2533, 4182, 4214 |
| RsaNI | GTAC | 8 cut(s) | 1076, 1371, 1712, 1795, 2073, 2532, 4181, 4213 |
| RseI | CAYNNNNRTG | 3 cut(s) | 893, 1287, 2338 |
| SacII | CCGCGG | 1 cut(s) | 4294 |
| SalI | GTCGAC | 1 cut(s) | 1961 |
| SapI | GCTCTTC | 1 cut(s) | 18 |
| Sau96I | GGNCC | 5 cut(s) | 1529, 1706, 2842, 4112, 4295 |
| SchI | GAGTC | 3 cut(s) | 1693, 1802, 2288 |
| SduI | GDGCHC | 8 cut(s) | 176, 381, 2447, 2632, 3461, 3765, 4165, 4237 |
| SfaNI | GCATC | 9 cut(s) | 948, 1032, 1074, 1096, 1297, 2008, 2937, 3096, 3593 |
| SfcI | CTRYAG | 1 cut(s) | 1094 |
| Sfr274I | CTCGAG | 1 cut(s) | 3144 |
| Sfr303I | CCGCGG | 1 cut(s) | 4294 |
| SgrBI | CCGCGG | 1 cut(s) | 4294 |
| SinI | GGWCC | 4 cut(s) | 1706, 2842, 4112, 4295 |
| SlaI | CTCGAG | 1 cut(s) | 3144 |
| SmaI | CCCGGG | 1 cut(s) | 3628 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 893, 1287, 2338 |
| SmlI | CTYRAG | 7 cut(s) | 1816, 2099, 3144, 3923, 3968, 3986, 4238 |
| SmoI | CTYRAG | 7 cut(s) | 1816, 2099, 3144, 3923, 3968, 3986, 4238 |
| SpeI | ACTAGT | 1 cut(s) | 2170 |
| SphI | GCATGC | 3 cut(s) | 725, 1564, 1730 |
| SseBI | AGGCCT | 2 cut(s) | 1120, 1156 |
| SsiI | CCGC | 9 cut(s) | 498, 742, 968, 1368, 2069, 2434, 3303, 4291, 4293 |
| SspI | AATATT | 2 cut(s) | 504, 946 |
| SspMI | CTAG | 5 cut(s) | 141, 2171, 2529, 2633, 2976 |
| StuI | AGGCCT | 2 cut(s) | 1120, 1156 |
| StyI | CCWWGG | 8 cut(s) | 140, 336, 2152, 2787, 2891, 3555, 3651, 3693 |
| TaiI | ACGT | 6 cut(s) | 61, 2884, 3083, 3918, 4004, 4043 |
| TauI | GCSGC | 2 cut(s) | 3306, 4293 |
| TfiI | GAWTC | 6 cut(s) | 347, 659, 674, 973, 1444, 1936 |
| TscAI | CASTG | 9 cut(s) | 13, 139, 176, 884, 928, 2452, 2632, 2719, 3097 |
| TseFI | GTSAC | 5 cut(s) | 130, 706, 1948, 1973, 3369 |
| Tsp45I | GTSAC | 5 cut(s) | 130, 706, 1948, 1973, 3369 |
| TspGWI | ACGGA | 1 cut(s) | 2090 |
| TspMI | CCCGGG | 1 cut(s) | 3626 |
| TspRI | CASTG | 9 cut(s) | 13, 139, 176, 884, 928, 2452, 2632, 2719, 3097 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2728 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1256 |
| VneI | GTGCAC | 1 cut(s) | 2443 |
| VpaK11BI | GGWCC | 4 cut(s) | 1706, 2842, 4112, 4295 |
| VspI | ATTAAT | 1 cut(s) | 1356 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2003 |
| XapI | RAATTY | 8 cut(s) | 579, 628, 713, 1839, 2050, 2190, 2819, 3536 |
| XbaI | TCTAGA | 1 cut(s) | 2632 |
| XhoI | CTCGAG | 1 cut(s) | 3144 |
| XmaI | CCCGGG | 1 cut(s) | 3626 |
| XmaJI | CCTAGG | 1 cut(s) | 140 |
| XmiI | GTMKAC | 2 cut(s) | 934, 1962 |
| XmnI | GAANNNNTTC | 3 cut(s) | 84, 276, 3437 |
| XspI | CTAG | 5 cut(s) | 141, 2171, 2529, 2633, 2976 |
| Zsp2I | ATGCAT | 5 cut(s) | 723, 963, 1047, 2476, 2952 |