Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Forward (+)

16001403 .. 16013851

Gene Structure 12449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4335 bp

ATGGAAGATGAATTGTATAATGAAGAACTAGTGCCATGTGCTTGCATAACTGGGGTACATCTAAATGTTTCCACTCGGGAAGATACGGAGAAAATATCAACATTATTAATCGAGGCAGCTGCCCAGGTTAATGATCCAAAGTTGGGACTTCCAAATCCAACGAATCAGTGTTCTACTTGTGGTACCCAAGACATAAAATCTTGTGATGGTCATTTTGGGTCCATCAAGTTTCCATGCACGATACTCCATCCATACTATCTACCGGAAGTTGCTCTTATTTTAAACAAGATTTGCCCGGCATGTAAAACCATCAGGCAAGGTGTAAGGGTCAAGGGATCTGAACGGAGGGGCTGCAGATATTGCTTTGGAGGTTCATCGGATTACCCTAGAATGAAGTTCAAAGTTTCTTCTAGAGAGCTTTTCAGAAGAAGTACAATAATAGTAGAAGCAGTTGGAGAATTGCCTCCTGATTATTGGGACTTCATTCCCAAAGATCCCCAACATGATGAAACACACACAAAACCAAATAGAAGAGTTCTATCTCATGCCCAGGTTCATTTTTTGTTGAATGATGTTGATCCAGATTTCATCACAAAGTTTGTTCCAACAACCAGCTCACTTTCTTTGGACTGTTTCCTTGTCACGCCAAATTGTCATCGTGTGACAGAAGTTATGTATTCATTTAATAATGGGCAGTCATTGATGTTTGATGATCGGACTAGAGCTTACAGGAAACTAGTGGATTTCAGAGGCACTGCAAACGAGCTGGGTTCTCGTGTTTTGGACTGCCTGAAAATTTCCAAGATAAACAAAGACAAAACAGGCAGAGATTCAATTTCAGTTGAGCAACAAAAGATTAAGGATTCTCCGTCCAGAACATCCGGCTTGAGATGGATAAAAGATGTTGTTCTTGGAAAGAGAAGTGATCACTGTTTTCGAACTGTTGTCGTTGGTGATCCAAACATCAAGCTGAGTGAGATTGGCATACCCCGCCGTATTGCAGAGAAAATGCAGATCTCTGAGAATCTGAACCAATATAACCTTGAGAAGTTGTATGCGTTTTGCCAGCTACGCCTTGGCCATCAGGGGAGAGGTGACATACATGTTCGTAGAAATGATAGTCTGGTTAGGATAAGTAATTTAGAAGAACTGGAGATGGGAGATATTATATACAGGGCGTTGAGTGATGGAGATGTTGTGTTGATAAATAGGCCTCCATCAATACATCAACACTCCCTAATAGCTTTAACCGCAAAGGTCCTTCCAGTAAACTCTGTAGTGTCGATAAATCCACTGTGTTGCTCTCCTTTTCGTGGTGATTTTGATGGTGATTGCCTTCATGGTTATGTTCCTCAATCAGTGGATACCAGAGTCGAGCTTACAGAGCTTGTTGCTTTAGATAAGCAATTAGTTAATGGGCAGAGTGGTTCCAACCTTCTTTCTCTCAGTCAAGATAGTTTAACTGCTTGCTATCTCATCATGGAAGATGGCACCCTGATGAATAAGTTTCAAATGCAACAACTGAAAATGCTTTGTCCCCCTGAACTGCCATCACCAGCGATAATTAAAGATCCTTCTGGTAACTCCGTTTCTTGGACGGCAAAGCAGATAATCAGCATGTTTCTACCTGCAAATTTTAATTATGCATTTCCTTCAAATGGCGTGCATATTAGCAATGGAGAGCTTCTAGCTTCTTCTGAAGGTTCTTCTTGGCTGCGAGACACCAGTGGGAATCTTTTCCAAAGTCTCATCGAACATTGCCCCGGTCAGATACTGGACATCTTCTTTACTGCTCAGGGAGTTCTATGTGAGTGGTTGTCAATGAGGGGCTTGAGTGTTTCTCTCTCAGACTTGTATATTGCGTCGGATACATGTTCAAGGAAAAACTTGGTGGAGGAAATCTTCTATGGGTTACAAGAAGCAGAGGAGGCATGTACTATCAGACAGTTGATGCTTGATTCTTGTCAGGAATTTCTTATGGGCTATGCTGAAGAGACAAAAAGTCCTTTGACTTTTGGTTCAGAACATTTTTGTTATCAGAAGCAGAAATCTGCTGCACTTAGTCAGGTCACGGTAGATGCTTTCAAAGAAGGTTTCCGGGATGTCCAAAATTTAGCATACAAATATGCCCGTGAGGACAACTCGTTGCTGGCTATGTTTAAGGCTGGAAGCAAGGGTAATATGCTGAAATTAGTTCAGCATGGTATGTGCCTTGGTTTGCAGCATTCACTAGTTCCCTTATCATTCAAGTTTCCGAACCAGCTCTCATGTGATGCATGGAATAATCAAAAAGCACGTGGTATCGTTCAGGAGGTTGGAAGAGCTTTTGAATCCATCGAGTCATATATCCCATCCGCTGTCGTTAAAAGTTCGTTCTTGACTGGGCTGAATCCGGTGGAATGCTTTGTTCATTCAGTCACGAGTCGAGATGGTTCTTTTAGTAATAATGCGGAACTTCCTGGGACTCTGAATAGAAAGCTCATGTATTTCATGCGTGATTTGCATACTGCTTATGACGGAACGGTTAGAAATGCATATGGGAACCAGCTGGTTCAGTTCTCCTTTGAAAATGACAAGGGCATAACTACTGCAGATAGCACCACAAACAGCTCATATGCAAAGAGTGTTATTGATTGTGGTGGCGGCCAACCCGTTGGTGCATTGTCTGCTTGTGCAATATCTGAAGCTGCATACAGTGCTTTAGATCAGCCAGTTAGTCTACTTGAAACTTCTCCTCTGCTAAATCTGAAGAACATTTTGGAGTGTGGTTCAAAGAAAAGGAGTGCTAAGCAAACTATGTCATTATTTTTATCTGAGAAGCTTGGAAGACCTAGGCATGGTTTCGAGTATGGAGCGCTAGAAGTTAAAAATCATCTAGAGGGACTCACATTTTCAGACATCGTTTCTACTGTCATGATAATGTTCTCCTCACAAACTGGCAGCAAGATGCATTTTAGTCCTTGGGTTTCTCACTTTCATATATCTAAGGAAATTGTACGAAGAAGAAGGCTGAATGTGCGATCTATTATAGAGGCACTTTATGCAAGATGCAACTCTGCTGGAGCGGAGTTGAAAATTATCCTTTGGAATTTGAAGATCACAAGAAATAAGGAATGTGATTGCTGCAGCACACCTAATGATACATTTTGCATCAGTGTCACACTGACTGAAAAGCAAGACAATTCTTCTGAAGAACTGGATAAAACTCGAGTCTTGGTGATACCATTCTTGCTTAAAACAGTAGTTAAAGGTTTTCTGGAGATAAAAAAGGTGGATATTATATGGAATGATCGAACTGGTTCACCTGGTGAACTCTACTTGAGAGTTTCTATGTCAGGAAAGACCAGAAGGGGGGCAACCTTTTGGAATATGCTTATGGACGATTGTCTTCCGGTTATGGATATGATTGATTGGTCGCGAAGTCATCCAGATAACGTCGATGACTTCTGCACTGCCTATGGAATAGATGTTGGGTGGAAACATTTCCTTAATAAGTTGGAGTCTGCAACCGTAGATATTGGAAAGACAATTCTTCCTCAGCATTTGCTTCTTGCAGCAGATTGTCTGTCAGCCACCGGCGAGTTTGTCAGCTTAAACGCAAAAGGCTTTGCTCAACAATTGGAACATGCATCTGTCACAGCCCCTTTTATGCAAGCTTGCTTTTCTACTCCTGGTCCTTGCTTGGTTAAAGCTGCTAAGGCTGGAGTGGTGGATAATCTCCAGGGGAGTTTGGACGCATTGACATGGGGAAATACTCCGTCCTTGGGAAGTGGTGGACAGTTTGATATTATATTTGCTGGGGAGGGATCTGTGTCTTCTAAGCCATTTGATGTTCATGATATGCTGAGCAGACAAATCAGTTCCAACCCCCAGAATGTATTTGAAATGTCAGATGCGCCAATTCATCTATCTGACAAATATGTTGCTCCACATGTGTACAAGTATGGTCTTTTGTGCAAGTTGAAGAGTATTACCAAATCAGTCTTAAGAGAAACTTTTACGATCCAGGATATTGATAGATTGTCTCAAACCTTGAAGAATATATTGCACAAGTATGACATCAATGAAAGCATAAATGAGATGGAGAAGAAAGATTTGATGACGGCTTTAGAATTTCACCCTCATAGGGATCGTAAGATCGGATTAGGAATCAAAGATATAAAGGTTGGCCAGCACCCTAACCATGAGAATGCACGATGCTTCATGCTAGTACATACGGATGGGACGATTGAAGATGTTTCGTACCACAAGTGCATCATTGGTGCTTTTGATATCATAGCTCCTCATAGGGCAAAGGGCTATCGCCTGAGACATTTGAACCGTGGTCCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

1444

Amino Acids

161.09

Weight (kDa)

6.82

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	43 - 104	4.4e-07	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	305 - 464	4.8e-35	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	469 - 618	1.1e-19	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	687 - 742	3.7e-08	RNA polymerase Rpb1, domain 4
DUF3223	PF11523	1346 - 1419	5.1e-25	Protein of unknown function (DUF3223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1636
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	2 cut(s)	182, 1490
AccBSI	CCGCTC	1 cut(s)	3065
AccI	GTMKAC	1 cut(s)	2719
AccII	CGCG	1 cut(s)	3418
AciI	CCGC	6 cut(s)	991, 1251, 2355, 2450, 2643, 3065
AclWI	GGATC	9 cut(s)	128, 343, 488, 572, 950, 1565, 3814, 3997, 4137
AcoI	YGGCCR	3 cut(s)	1078, 2644, 4168
AcsI	RAATTY	6 cut(s)	795, 1633, 1970, 2110, 3088, 4112
AcuI	CTGAAG	5 cut(s)	1719, 2010, 2703, 2768, 3210
AcvI	CACGTG	1 cut(s)	2297
AdeI	CACNNNGTG	1 cut(s)	3308
AfaI	GTAC	8 cut(s)	57, 184, 433, 1936, 2997, 3938, 4212, 4244
AfeI	AGCGCT	1 cut(s)	2856
AfiI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 2837, 3351, 3764, 4126
AflII	CTTAAG	1 cut(s)	3985
AflIII	ACRYGT	3 cut(s)	1102, 1871, 3931
AhdI	GACNNNNNGTC	1 cut(s)	2001
AhlI	ACTAGT	3 cut(s)	28, 736, 2230
AjnI	CCWGG	7 cut(s)	123, 549, 2458, 3304, 3670, 3720, 4005
AjuI	GAANNNNNNNTTGG	2 cut(s)	2741, 2773
Alw26I	GTCTC	5 cut(s)	1713, 1751, 1988, 4029, 4303
AlwI	GGATC	9 cut(s)	128, 343, 488, 572, 950, 1565, 3814, 3997, 4137
AlwNI	CAGNNNCTG	1 cut(s)	1774
Ama87I	CYCGRG	2 cut(s)	75, 3207
Aor51HI	AGCGCT	1 cut(s)	2856
AoxI	GGCC	4 cut(s)	1078, 1211, 2644, 4168
ApoI	RAATTY	6 cut(s)	795, 1633, 1970, 2110, 3088, 4112
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	3 cut(s)	1736, 3298, 3482
Asp718I	GGTACC	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	2831
AspLEI	GCGC	2 cut(s)	2857, 3898
AspS9I	GGNCC	4 cut(s)	219, 1258, 3674, 4325
AsuC2I	CCSGG	3 cut(s)	296, 1764, 2099
AsuHPI	GGTGA	9 cut(s)	965, 1106, 1328, 1340, 1545, 3229, 3294, 3320, 4109
AsuII	TTCGAA	1 cut(s)	937
AvaI	CYCGRG	2 cut(s)	75, 3207
AvaII	GGWCC	4 cut(s)	219, 1258, 3674, 4325
AvrII	CCTAGG	1 cut(s)	2831
BaeI	ACNNNNGTAYC	2 cut(s)	1356, 1389
BalI	TGGCCA	2 cut(s)	1080, 4170
BanI	GGYRCC	2 cut(s)	182, 1490
BauI	CACGAG	2 cut(s)	774, 2419
BbrPI	CACGTG	1 cut(s)	2297
BbsI	GAAGAC	3 cut(s)	2833, 3380, 3807
BbvCI	CCTCAGC	1 cut(s)	3537
BceAI	ACGGC	3 cut(s)	978, 1614, 4119
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	7 cut(s)	125, 551, 2460, 3306, 3672, 3722, 4007
BciVI	GTATCC	2 cut(s)	1357, 1861
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	3 cut(s)	296, 1764, 2099
BcoDI	GTCTC	5 cut(s)	1713, 1751, 1988, 4029, 4303
BcuI	ACTAGT	3 cut(s)	28, 736, 2230
BfmI	CTRYAG	4 cut(s)	352, 1275, 2589, 3124
BfoI	RGCGCY	1 cut(s)	2858
BfrI	CTTAAG	1 cut(s)	3985
BfuAI	ACCTGC	1 cut(s)	1636
BfuI	GTATCC	2 cut(s)	1357, 1861
BglII	AGATCT	1 cut(s)	1014
BlnI	CCTAGG	1 cut(s)	2831
BlpI	GCTNAGC	2 cut(s)	2787, 3845
Bme18I	GGWCC	4 cut(s)	219, 1258, 3674, 4325
BmeRI	GACNNNNNGTC	1 cut(s)	2001
BmeT110I	CYCGRG	2 cut(s)	75, 3207
BmgT120I	GGNCC	4 cut(s)	219, 1258, 3674, 4325
BmiI	GGNNCC	5 cut(s)	184, 220, 1429, 1492, 2543
BmrI	ACTGGG	2 cut(s)	60, 2391
BmuI	ACTGGG	2 cut(s)	60, 2391
BoxI	GACNNNNGTC	1 cut(s)	3384
BpiI	GAAGAC	3 cut(s)	2833, 3380, 3807
BplI	GAGNNNNNCTC	4 cut(s)	1825, 1857, 2126, 2158
BpmI	CTGGAG	5 cut(s)	1172, 3081, 3278, 3704, 3723
Bpu10I	CCTNAGC	3 cut(s)	1794, 3537, 3696
Bpu1102I	GCTNAGC	2 cut(s)	2787, 3845
Bpu14I	TTCGAA	1 cut(s)	937
BpuEI	CTTGAG	4 cut(s)	907, 1064, 1852, 3340
BpuMI	CCSGG	3 cut(s)	296, 1764, 2099
BsaAI	YACGTR	1 cut(s)	2297
BsaBI	GATNNNNATC	1 cut(s)	576
BsaWI	WCCGGW	3 cut(s)	262, 2392, 3391
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 2837, 3351, 3764, 4126
Bse118I	RCCGGY	1 cut(s)	3575
Bse3DI	GCAATG	2 cut(s)	1681, 1756
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	7 cut(s)	125, 551, 2460, 3306, 3672, 3722, 4007
BseGI	GGATG	6 cut(s)	247, 878, 2107, 2351, 3424, 4225
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 2837, 3351, 3764, 4126
BseMI	GCAATG	2 cut(s)	1681, 1756
BseMII	CTCAG	9 cut(s)	962, 1011, 1459, 1808, 1860, 2805, 3551, 3836, 4298
BseRI	GAGGAG	4 cut(s)	1940, 2724, 2917, 4272
BseYI	CCCAGC	2 cut(s)	766, 3797
BsgI	GTGCAG	2 cut(s)	2040, 3433
Bsh1236I	CGCG	1 cut(s)	3418
BshFI	GGCC	4 cut(s)	1080, 1213, 2646, 4170
BshNI	GGYRCC	2 cut(s)	182, 1490
BsiHKCI	CYCGRG	2 cut(s)	75, 3207
BsiSI	CCGG	8 cut(s)	263, 296, 882, 1764, 2098, 2393, 3392, 3576
BslFI	GGGAC	6 cut(s)	159, 491, 1521, 2476, 2895, 4237
BslI	CCNNNNNNNGG	8 cut(s)	143, 1313, 1593, 1658, 2837, 3351, 3764, 4126
BsmAI	GTCTC	5 cut(s)	1713, 1751, 1988, 4029, 4303
BsmFI	GGGAC	6 cut(s)	159, 491, 1521, 2476, 2895, 4237
BsmI	GAATGC	3 cut(s)	2224, 2405, 4195
BsnI	GGCC	4 cut(s)	1080, 1213, 2646, 4170
BsoBI	CYCGRG	2 cut(s)	75, 3207
Bsp119I	TTCGAA	1 cut(s)	937
Bsp1407I	TGTACA	1 cut(s)	3936
Bsp1720I	GCTNAGC	2 cut(s)	2787, 3845
Bsp68I	TCGCGA	1 cut(s)	3418
BspACI	CCGC	6 cut(s)	991, 1251, 2355, 2450, 2643, 3065
BspANI	GGCC	4 cut(s)	1080, 1213, 2646, 4170
BspCNI	CTCAG	9 cut(s)	963, 1012, 1458, 1807, 1859, 2806, 3550, 3837, 4299
BspFNI	CGCG	1 cut(s)	3418
BspHI	TCATGA	2 cut(s)	2913, 3835
BspLI	GGNNCC	5 cut(s)	184, 220, 1429, 1492, 2543
BspMAI	CTGCAG	3 cut(s)	356, 2593, 3128
BspMI	ACCTGC	1 cut(s)	1636
BspPI	GGATC	9 cut(s)	128, 343, 488, 572, 950, 1565, 3814, 3997, 4137
BspQI	GCTCTTC	1 cut(s)	2314
BspT104I	TTCGAA	1 cut(s)	937
BspT107I	GGYRCC	2 cut(s)	182, 1490
BspTI	CTTAAG	1 cut(s)	3985
BsrBI	CCGCTC	1 cut(s)	3065
BsrDI	GCAATG	2 cut(s)	1681, 1756
BsrFI	RCCGGY	1 cut(s)	3575
BsrGI	TGTACA	1 cut(s)	3936
BssAI	RCCGGY	1 cut(s)	3575
BssSI	CACGAG	2 cut(s)	774, 2419
BssT1I	CCWWGG	5 cut(s)	1075, 2212, 2831, 2960, 3762
Bst2BI	CACGAG	2 cut(s)	774, 2419
Bst2UI	CCWGG	7 cut(s)	125, 551, 2460, 3306, 3672, 3722, 4007
Bst6I	CTCTTC	4 cut(s)	526, 1986, 2314, 3959
BstAFI	CTTAAG	1 cut(s)	3985
BstAPI	GCANNNNNTGC	4 cut(s)	360, 2666, 2696, 3041
BstAUI	TGTACA	1 cut(s)	3936
BstBAI	YACGTR	1 cut(s)	2297
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	8 cut(s)	43, 1067, 1468, 1664, 2151, 3654, 3658, 4172
BstDSI	CCRYGG	1 cut(s)	4321
BstF5I	GGATG	6 cut(s)	247, 878, 2107, 2351, 3424, 4225
BstFNI	CGCG	1 cut(s)	3418
BstH2I	RGCGCY	1 cut(s)	2858
BstHHI	GCGC	2 cut(s)	2857, 3898
BstMAI	GTCTC	5 cut(s)	1713, 1751, 1988, 4029, 4303
BstNI	CCWGG	7 cut(s)	125, 551, 2460, 3306, 3672, 3722, 4007
BstNSI	RCATGY	7 cut(s)	303, 1106, 1621, 1875, 1935, 3629, 3935
BstPAI	GACNNNNGTC	1 cut(s)	3384
BstSFI	CTRYAG	4 cut(s)	352, 1275, 2589, 3124
BstUI	CGCG	1 cut(s)	3418
BstV2I	GAAGAC	3 cut(s)	2833, 3380, 3807
BstX2I	RGATCY	5 cut(s)	335, 493, 1014, 1570, 3806
BstXI	CCANNNNNNTGG	1 cut(s)	2654
BstYI	RGATCY	5 cut(s)	335, 493, 1014, 1570, 3806
BsuI	GTATCC	2 cut(s)	1357, 1861
BsuRI	GGCC	4 cut(s)	1080, 1213, 2646, 4170
BtgI	CCRYGG	1 cut(s)	4321
BtsCI	GGATG	6 cut(s)	247, 878, 2107, 2351, 3424, 4225
BtsI	GCAGTG	2 cut(s)	753, 3450
BtuMI	TCGCGA	1 cut(s)	3418
BveI	ACCTGC	1 cut(s)	1636
Cac8I	GCNNGC	8 cut(s)	43, 1067, 1468, 1664, 2151, 3654, 3658, 4172
CaiI	CAGNNNCTG	1 cut(s)	1774
CciI	TCATGA	2 cut(s)	2913, 3835
CfoI	GCGC	2 cut(s)	2857, 3898
Cfr10I	RCCGGY	1 cut(s)	3575
Cfr13I	GGNCC	4 cut(s)	219, 1258, 3674, 4325
CseI	GACGC	2 cut(s)	1851, 3743
CsiI	ACCWGGT	1 cut(s)	3304
Csp6I	GTAC	8 cut(s)	56, 183, 432, 1935, 2996, 3937, 4211, 4243
CviQI	GTAC	8 cut(s)	56, 183, 432, 1935, 2996, 3937, 4211, 4243
DraI	TTTAAA	1 cut(s)	282
DraIII	CACNNNGTG	1 cut(s)	3308
DriI	GACNNNNNGTC	1 cut(s)	2001
EaeI	YGGCCR	3 cut(s)	1078, 2644, 4168
Eam1104I	CTCTTC	4 cut(s)	526, 1986, 2314, 3959
Eam1105I	GACNNNNNGTC	1 cut(s)	2001
EarI	CTCTTC	4 cut(s)	526, 1986, 2314, 3959
Eco130I	CCWWGG	5 cut(s)	1075, 2212, 2831, 2960, 3762
Eco147I	AGGCCT	1 cut(s)	1213
Eco32I	GATATC	1 cut(s)	4273
Eco47I	GGWCC	4 cut(s)	219, 1258, 3674, 4325
Eco47III	AGCGCT	1 cut(s)	2856
Eco57I	CTGAAG	5 cut(s)	1719, 2010, 2703, 2768, 3210
Eco72I	CACGTG	1 cut(s)	2297
Eco88I	CYCGRG	2 cut(s)	75, 3207
EcoO109I	RGGNCCY	1 cut(s)	1258
EcoRII	CCWGG	7 cut(s)	123, 549, 2458, 3304, 3670, 3720, 4005
EcoRV	GATATC	1 cut(s)	4273
EcoT14I	CCWWGG	5 cut(s)	1075, 2212, 2831, 2960, 3762
EcoT22I	ATGCAT	5 cut(s)	1648, 2278, 2536, 2952, 3631
ErhI	CCWWGG	5 cut(s)	1075, 2212, 2831, 2960, 3762
FalI	AAGNNNNNCTT	4 cut(s)	258, 290, 3979, 4011
FaqI	GGGAC	6 cut(s)	159, 491, 1521, 2476, 2895, 4237
FauI	CCCGC	1 cut(s)	998
FauNDI	CATATG	2 cut(s)	2536, 2614
FbaI	TGATCA	1 cut(s)	925
FblI	GTMKAC	1 cut(s)	2719
FokI	GGATG	6 cut(s)	234, 865, 2114, 2338, 3411, 4232
GlaI	GCGC	2 cut(s)	2856, 3897
GsaI	CCCAGC	2 cut(s)	770, 3801
GsuI	CTGGAG	5 cut(s)	1172, 3081, 3278, 3704, 3723
HaeII	RGCGCY	1 cut(s)	2858
HaeIII	GGCC	4 cut(s)	1080, 1213, 2646, 4170
HapII	CCGG	8 cut(s)	263, 296, 882, 1764, 2098, 2393, 3392, 3576
HgaI	GACGC	2 cut(s)	1851, 3743
HhaI	GCGC	2 cut(s)	2857, 3898
Hin6I	GCGC	2 cut(s)	2855, 3896
HinP1I	GCGC	2 cut(s)	2855, 3896
HindIII	AAGCTT	2 cut(s)	2819, 3654
HpaII	CCGG	8 cut(s)	263, 296, 882, 1764, 2098, 2393, 3392, 3576
HphI	GGTGA	9 cut(s)	965, 1106, 1328, 1340, 1545, 3229, 3294, 3320, 4109
Hpy166II	GTNNAC	6 cut(s)	1270, 2720, 3302, 3311, 3776, 3937
Hpy8I	GTNNAC	6 cut(s)	1270, 2720, 3302, 3311, 3776, 3937
Hpy99I	CGWCG	2 cut(s)	1867, 3440
HpyAV	CCTTC	9 cut(s)	1271, 1346, 1445, 1584, 1662, 1694, 2084, 3000, 3342
HpyCH4IV	ACGT	2 cut(s)	2296, 3435
HpySE526I	ACGT	2 cut(s)	2296, 3435
HspAI	GCGC	2 cut(s)	2855, 3896
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	925
LguI	GCTCTTC	1 cut(s)	2314
LmnI	GCTCC	4 cut(s)	2852, 3062, 3931, 4285
MabI	ACCWGGT	1 cut(s)	3304
MaeII	ACGT	2 cut(s)	2296, 3435
MaeIII	GTNAC	9 cut(s)	640, 661, 1094, 1580, 1911, 2068, 2416, 3157, 3634
MbiI	CCGCTC	1 cut(s)	3065
MfeI	CAATTG	1 cut(s)	3617
MflI	RGATCY	5 cut(s)	335, 493, 1014, 1570, 3806
MlsI	TGGCCA	2 cut(s)	1080, 4170
MluNI	TGGCCA	2 cut(s)	1080, 4170
MlyI	GAGTC	7 cut(s)	1380, 2348, 2431, 2458, 2877, 3219, 3509
MmeI	TCCRAC	8 cut(s)	182, 433, 629, 1455, 1845, 2296, 3477, 3888
Mox20I	TGGCCA	2 cut(s)	1080, 4170
Mph1103I	ATGCAT	5 cut(s)	1648, 2278, 2536, 2952, 3631
MroXI	GAANNNNTTC	3 cut(s)	1736, 3298, 3482
MscI	TGGCCA	2 cut(s)	1080, 4170
MslI	CAYNNNNRTG	8 cut(s)	63, 1344, 1496, 2918, 3742, 4053, 4188, 4218
Msp20I	TGGCCA	2 cut(s)	1080, 4170
MspA1I	CMGCKG	3 cut(s)	119, 2357, 2548
MspCI	CTTAAG	1 cut(s)	3985
MspI	CCGG	8 cut(s)	263, 296, 882, 1764, 2098, 2393, 3392, 3576
MunI	CAATTG	1 cut(s)	3617
Mva1269I	GAATGC	3 cut(s)	2224, 2405, 4195
MvaI	CCWGG	7 cut(s)	125, 551, 2460, 3306, 3672, 3722, 4007
MvnI	CGCG	1 cut(s)	3418
NciI	CCSGG	3 cut(s)	296, 1764, 2099
NdeI	CATATG	2 cut(s)	2536, 2614
NlaIV	GGNNCC	5 cut(s)	184, 220, 1429, 1492, 2543
NmuCI	GTSAC	7 cut(s)	640, 661, 1094, 2068, 2416, 3157, 3634
NruI	TCGCGA	1 cut(s)	3418
NsiI	ATGCAT	5 cut(s)	1648, 2278, 2536, 2952, 3631
NspI	RCATGY	7 cut(s)	303, 1106, 1621, 1875, 1935, 3629, 3935
NspV	TTCGAA	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	3207
PagI	TCATGA	2 cut(s)	2913, 3835
PceI	AGGCCT	1 cut(s)	1213
PciI	ACATGT	3 cut(s)	1102, 1871, 3931
PciSI	GCTCTTC	1 cut(s)	2314
PcsI	WCGNNNNNNNCGW	1 cut(s)	4223
PctI	GAATGC	3 cut(s)	2224, 2405, 4195
PdmI	GAANNNNTTC	3 cut(s)	1736, 3298, 3482
PfeI	GAWTC	9 cut(s)	163, 830, 863, 1024, 1732, 1958, 2330, 2389, 4149
PfoI	TCCNGGA	2 cut(s)	2097, 4005
PleI	GAGTC	7 cut(s)	1379, 2347, 2430, 2458, 2877, 3218, 3508
PmaCI	CACGTG	1 cut(s)	2297
PmlI	CACGTG	1 cut(s)	2297
PpsI	GAGTC	7 cut(s)	1379, 2347, 2430, 2458, 2877, 3218, 3508
Ppu21I	YACGTR	1 cut(s)	2297
PpuMI	RGGWCCY	1 cut(s)	1258
PscI	ACATGT	3 cut(s)	1102, 1871, 3931
PshAI	GACNNNNGTC	1 cut(s)	3384
PshBI	ATTAAT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	1258
Psp6I	CCWGG	7 cut(s)	123, 549, 2458, 3304, 3670, 3720, 4005
PspCI	CACGTG	1 cut(s)	2297
PspFI	CCCAGC	2 cut(s)	766, 3797
PspGI	CCWGG	7 cut(s)	123, 549, 2458, 3304, 3670, 3720, 4005
PspN4I	GGNNCC	5 cut(s)	184, 220, 1429, 1492, 2543
PspPI	GGNCC	4 cut(s)	219, 1258, 3674, 4325
PspPPI	RGGWCCY	1 cut(s)	1258
PspXI	VCTCGAGB	1 cut(s)	3207
PstI	CTGCAG	3 cut(s)	356, 2593, 3128
PstNI	CAGNNNCTG	1 cut(s)	1774
PsuI	RGATCY	5 cut(s)	335, 493, 1014, 1570, 3806
PvuII	CAGCTG	2 cut(s)	119, 2548
RruI	TCGCGA	1 cut(s)	3418
RsaI	GTAC	8 cut(s)	57, 184, 433, 1936, 2997, 3938, 4212, 4244
RsaNI	GTAC	8 cut(s)	56, 183, 432, 1935, 2996, 3937, 4211, 4243
RseI	CAYNNNNRTG	8 cut(s)	63, 1344, 1496, 2918, 3742, 4053, 4188, 4218
SapI	GCTCTTC	1 cut(s)	2314
Sau96I	GGNCC	4 cut(s)	219, 1258, 3674, 4325
SchI	GAGTC	7 cut(s)	1380, 2348, 2431, 2458, 2877, 3219, 3509
SexAI	ACCWGGT	1 cut(s)	3304
SfcI	CTRYAG	4 cut(s)	352, 1275, 2589, 3124
Sfr274I	CTCGAG	1 cut(s)	3207
SfuI	TTCGAA	1 cut(s)	937
SgrAI	CRCCGGYG	1 cut(s)	3575
SinI	GGWCC	4 cut(s)	219, 1258, 3674, 4325
SlaI	CTCGAG	1 cut(s)	3207
SmiMI	CAYNNNNRTG	8 cut(s)	63, 1344, 1496, 2918, 3742, 4053, 4188, 4218
SmlI	CTYRAG	6 cut(s)	886, 1043, 1831, 3207, 3319, 3985
SmoI	CTYRAG	6 cut(s)	886, 1043, 1831, 3207, 3319, 3985
SpeI	ACTAGT	3 cut(s)	28, 736, 2230
SseBI	AGGCCT	1 cut(s)	1213
SsiI	CCGC	6 cut(s)	991, 1251, 2355, 2450, 2643, 3065
StuI	AGGCCT	1 cut(s)	1213
StyI	CCWWGG	5 cut(s)	1075, 2212, 2831, 2960, 3762
TaiI	ACGT	2 cut(s)	2299, 3438
TatI	WGTACW	4 cut(s)	431, 1934, 3936, 4210
TauI	GCSGC	1 cut(s)	2646
TfiI	GAWTC	9 cut(s)	163, 830, 863, 1024, 1732, 1958, 2330, 2389, 4149
TseFI	GTSAC	7 cut(s)	640, 661, 1094, 2068, 2416, 3157, 3634
Tsp45I	GTSAC	7 cut(s)	640, 661, 1094, 2068, 2416, 3157, 3634
TspGWI	ACGGA	7 cut(s)	101, 358, 858, 1576, 2532, 3747, 4232
Vha464I	CTTAAG	1 cut(s)	3985
VpaK11BI	GGWCC	4 cut(s)	219, 1258, 3674, 4325
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	6 cut(s)	795, 1633, 1970, 2110, 3088, 4112
XbaI	TCTAGA	2 cut(s)	410, 2875
XceI	RCATGY	7 cut(s)	303, 1106, 1621, 1875, 1935, 3629, 3935
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073
XhoI	CTCGAG	1 cut(s)	3207
XmaJI	CCTAGG	1 cut(s)	2831
XmiI	GTMKAC	1 cut(s)	2719
XmnI	GAANNNNTTC	3 cut(s)	1736, 3298, 3482
Zsp2I	ATGCAT	5 cut(s)	1648, 2278, 2536, 2952, 3631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.