Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002992

Physical Location & Seq

Genomic Coordinates Forward (+)

16766412 .. 16767541

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1069500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTCTATATTTGTCTAAGAAGCTTGGAAGACAGAGGCACGGCTTCGAGTATGCAGCCTTGGAAGTTAAGAATTATTTGGAGGGGCTGAAATTTTCCGACATTGTTTCTACTTTTATGATAATCTTCTCCTCCCACAAAGAGAGCAAAAAGCGTTTCAGCCCATGGGTTACTCACTTTCACATAGGCAAGGAAATTGTGAGGAGGAGAAGACTGAAGATGCGTTCCATTGTCAACTCCCTTTATGCGAGGTGCAACTCTGTCAGACTGGAACTAAAAGCTATTCTTCACAGTTTGCTGATTACAAGCAAGGACTGCTCTGCAGCTTACACTTGCAACGGAGATAATGGTACATTTTGCATCACTGTCACTATGGCTGAAAACAACAAAAGTTCTTCTGAACAGCTGGATAAAGCTCGAGACTTAGTGATACCTTTCCTGCTTGAAACAGTGGTTAAAGGTTGGTTGTGCACCCTGGCTTATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

9.62

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63020 AT1G63020 AT1G63020 AT1G63020 AT1G63020
fragaria_vesca	FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400 FvH4_5g01400
malus_domestica	MD04G1068800.v1.1 MD06G1069300.v1.1 MD06G1069400.v1.1 MD06G1069500.v1.1 MD06G1069800.v1.1
prunus_persica	Prupe.5G089300_v2.0.a1
pyrus_communis	pycom04g06250
rosa_chinensis	RchiOBHm_Chr7g0199481
rosa_laevigata	RLG00000003790
rosa_multiflora	Rmu_co8411067.1_g000001 Rmu_sc0003890.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256700
rosa_rugosa	Rorug07G0054300 Rorug07G0054400 Rorug07G0054500 Rorug07G0054500
rosa_samantha	Rh7AG179300 Rh7BG182800 Rh7CG188100 Rh7DG182200
rosa_wichuraiana	Rw7G015760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	5 cut(s)	25, 281, 326, 406, 416
AluI	AGCT	5 cut(s)	25, 281, 326, 406, 416
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	9, 414
Alw44I	GTGCAC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	417
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	56, 323
ApoI	RAATTY	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	37, 217
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	68, 335
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	2 cut(s)	9, 414
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	57, 324
BlsI	GCNGC	2 cut(s)	58, 325
Bme1390I	CCNGG	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	210, 369
BpiI	GAAGAC	2 cut(s)	37, 217
BsaJI	CCNNGG	3 cut(s)	60, 164, 474
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	3 cut(s)	60, 164, 474
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	3 cut(s)	121, 217, 220
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	68, 335
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	417
BsmAI	GTCTC	2 cut(s)	9, 414
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp19I	CCATGG	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	60, 164, 474
BssT1I	CCWWGG	2 cut(s)	60, 164
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	3 cut(s)	293, 367, 451
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	18, 424
BstDSI	CCRYGG	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	9, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	68, 335
BstV2I	GAAGAC	2 cut(s)	37, 217
BtgI	CCRYGG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	363, 456
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	165
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	18, 424
Eco130I	CCWWGG	2 cut(s)	60, 164
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	60, 164
ErhI	CCWWGG	2 cut(s)	60, 164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	8 cut(s)	10, 54, 119, 166, 185, 246, 374, 483
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	57, 324
Fsp4HI	GCNGC	2 cut(s)	57, 324
GluI	GCNGC	2 cut(s)	57, 324
Hin1II	CATG	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	235, 471
Hpy188I	TCNGA	3 cut(s)	100, 266, 400
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	235, 471
HpyCH4III	ACNGT	3 cut(s)	293, 367, 451
HpyCH4V	TGCA	6 cut(s)	56, 255, 323, 336, 360, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	18, 424
Hsp92II	CATG	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	254, 392, 452, 461
Lsp1109I	GCAGC	2 cut(s)	68, 335
LweI	GCATC	2 cut(s)	210, 369
MaeIII	GTNAC	2 cut(s)	169, 367
MboII	GAAGA	6 cut(s)	42, 118, 222, 229, 278, 387
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	73, 92, 195
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	30, 76, 142, 195, 198, 243
MseI	TTAA	2 cut(s)	69, 456
MspA1I	CMGCKG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	164
NlaIII	CATG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	58, 325
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	69, 456
SatI	GCNGC	2 cut(s)	57, 324
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	8 cut(s)	27, 254, 283, 328, 408, 418, 436, 463
SfaNI	GCATC	2 cut(s)	210, 369
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	417
SlaI	CTCGAG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	3 cut(s)	73, 92, 195
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	2 cut(s)	60, 164
TaaI	ACNGT	3 cut(s)	293, 367, 451
TaqI	TCGA	2 cut(s)	48, 418
TasI	AATT	3 cut(s)	73, 92, 195
Tru1I	TTAA	2 cut(s)	69, 456
Tru9I	TTAA	2 cut(s)	69, 456
TscAI	CASTG	2 cut(s)	370, 456
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	56, 323
Tsp45I	GTSAC	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	370, 456
VneI	GTGCAC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.