Mur ligase family, catalytic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63680 AT1G63680 AT1G63680 |
| fragaria_vesca | FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 |
| malus_domestica | MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1 |
| prunus_persica | Prupe.5G101100_v2.0.a1 |
| pyrus_communis | pycom06g08120 |
| rosa_chinensis | RchiOBHm_Chr7g0197491 |
| rosa_laevigata | RLG00000003936 RLG00000003970 |
| rosa_multiflora | Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00258420 |
| rosa_rugosa | Rorug07G0040000 Rorug07G0040100 |
| rosa_samantha | Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600 |
| rosa_wichuraiana | Rw7G014400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1644 |
| Acc36I | ACCTGC | 1 cut(s) | 139 |
| Acc65I | GGTACC | 1 cut(s) | 757 |
| AccB1I | GGYRCC | 1 cut(s) | 757 |
| AccI | GTMKAC | 1 cut(s) | 1600 |
| AccII | CGCG | 3 cut(s) | 320, 817, 819 |
| AccIII | TCCGGA | 1 cut(s) | 1417 |
| AclWI | GGATC | 7 cut(s) | 164, 217, 629, 1409, 1445, 1791, 1967 |
| AcsI | RAATTY | 5 cut(s) | 100, 142, 662, 865, 1330 |
| AcuI | CTGAAG | 2 cut(s) | 198, 1407 |
| AfaI | GTAC | 6 cut(s) | 109, 149, 759, 1054, 1363, 2115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| AflII | CTTAAG | 1 cut(s) | 455 |
| AflIII | ACRYGT | 3 cut(s) | 1029, 1995, 2104 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1999 |
| AjiI | CACGTC | 1 cut(s) | 2105 |
| AjnI | CCWGG | 1 cut(s) | 1732 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1752, 1784 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 698, 730 |
| Alw21I | GWGCWC | 3 cut(s) | 247, 955, 1687 |
| Alw26I | GTCTC | 3 cut(s) | 320, 351, 1562 |
| Alw44I | GTGCAC | 1 cut(s) | 243 |
| AlwI | GGATC | 7 cut(s) | 164, 217, 629, 1409, 1445, 1791, 1967 |
| Aor13HI | TCCGGA | 1 cut(s) | 1417 |
| ApaLI | GTGCAC | 1 cut(s) | 243 |
| ApeKI | GCWGC | 5 cut(s) | 236, 989, 1460, 1655, 1816 |
| ApoI | RAATTY | 5 cut(s) | 100, 142, 662, 865, 1330 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1016, 1048, 1561, 1593 |
| Asp718I | GGTACC | 1 cut(s) | 757 |
| AspLEI | GCGC | 2 cut(s) | 819, 830 |
| AspS9I | GGNCC | 1 cut(s) | 128 |
| AsuC2I | CCSGG | 1 cut(s) | 799 |
| AsuII | TTCGAA | 1 cut(s) | 209 |
| AsuNHI | GCTAGC | 1 cut(s) | 911 |
| AvaII | GGWCC | 1 cut(s) | 128 |
| BaeGI | GKGCMC | 1 cut(s) | 247 |
| BanI | GGYRCC | 1 cut(s) | 757 |
| BanII | GRGCYC | 1 cut(s) | 1687 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1840, 1872 |
| BauI | CACGAG | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 321 |
| Bbv12I | GWGCWC | 3 cut(s) | 247, 955, 1687 |
| BbvI | GCAGC | 5 cut(s) | 223, 1001, 1472, 1642, 1803 |
| BccI | CCATC | 5 cut(s) | 1052, 1099, 1213, 1796, 2007 |
| BceAI | ACGGC | 3 cut(s) | 462, 790, 1646 |
| BciT130I | CCWGG | 1 cut(s) | 1734 |
| BciVI | GTATCC | 1 cut(s) | 1162 |
| BclI | TGATCA | 1 cut(s) | 649 |
| BcnI | CCSGG | 1 cut(s) | 799 |
| BcoDI | GTCTC | 3 cut(s) | 320, 351, 1562 |
| BfaI | CTAG | 5 cut(s) | 254, 618, 912, 1338, 1820 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BfrI | CTTAAG | 1 cut(s) | 455 |
| BfuAI | ACCTGC | 1 cut(s) | 139 |
| BfuI | GTATCC | 1 cut(s) | 1162 |
| BglII | AGATCT | 2 cut(s) | 835, 1608 |
| BisI | GCNGC | 7 cut(s) | 123, 237, 321, 990, 1461, 1656, 1817 |
| BlpI | GCTNAGC | 2 cut(s) | 727, 732 |
| BlsI | GCNGC | 7 cut(s) | 124, 238, 322, 991, 1462, 1657, 1818 |
| Bme1390I | CCNGG | 2 cut(s) | 799, 1734 |
| Bme18I | GGWCC | 1 cut(s) | 128 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1999 |
| BmgBI | CACGTC | 1 cut(s) | 2105 |
| BmgT120I | GGNCC | 1 cut(s) | 128 |
| BmiI | GGNNCC | 3 cut(s) | 129, 708, 759 |
| BmrFI | CCNGG | 2 cut(s) | 799, 1734 |
| BmrI | ACTGGG | 1 cut(s) | 23 |
| BmsI | GCATC | 6 cut(s) | 458, 1024, 1186, 1372, 1714, 2010 |
| BmtI | GCTAGC | 1 cut(s) | 915 |
| BmuI | ACTGGG | 1 cut(s) | 23 |
| BpiI | GAAGAC | 1 cut(s) | 321 |
| BpmI | CTGGAG | 1 cut(s) | 1625 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 727, 732 |
| Bpu14I | TTCGAA | 1 cut(s) | 209 |
| BpuEI | CTTGAG | 4 cut(s) | 892, 1257, 1578, 1712 |
| BpuMI | CCSGG | 1 cut(s) | 799 |
| Bsa29I | ATCGAT | 1 cut(s) | 375 |
| BsaAI | YACGTR | 1 cut(s) | 1077 |
| BsaBI | GATNNNNATC | 2 cut(s) | 168, 2055 |
| BsaJI | CCNNGG | 4 cut(s) | 1512, 1732, 1961, 2294 |
| BsaWI | WCCGGW | 2 cut(s) | 184, 1417 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 629, 659 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1011 |
| Bse1I | ACTGG | 6 cut(s) | 29, 52, 77, 568, 1054, 1608 |
| Bse3DI | GCAATG | 1 cut(s) | 1314 |
| Bse8I | GATNNNNATC | 2 cut(s) | 168, 2055 |
| BseAI | TCCGGA | 1 cut(s) | 1417 |
| BseBI | CCWGG | 1 cut(s) | 1734 |
| BseCI | ATCGAT | 1 cut(s) | 375 |
| BseDI | CCNNGG | 4 cut(s) | 1512, 1732, 1961, 2294 |
| BseGI | GGATG | 6 cut(s) | 550, 679, 1015, 1063, 1996, 2018 |
| BseJI | GATNNNNATC | 2 cut(s) | 168, 2055 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| BseMI | GCAATG | 1 cut(s) | 1314 |
| BseMII | CTCAG | 2 cut(s) | 723, 780 |
| BseNI | ACTGG | 6 cut(s) | 29, 52, 77, 568, 1054, 1608 |
| BseRI | GAGGAG | 5 cut(s) | 12, 485, 906, 1260, 1677 |
| BseSI | GKGCMC | 1 cut(s) | 247 |
| BseXI | GCAGC | 5 cut(s) | 223, 1001, 1472, 1642, 1803 |
| BseYI | CCCAGC | 1 cut(s) | 2162 |
| Bsh1236I | CGCG | 3 cut(s) | 320, 817, 819 |
| BshNI | GGYRCC | 1 cut(s) | 757 |
| BshVI | ATCGAT | 1 cut(s) | 375 |
| BsiHKAI | GWGCWC | 3 cut(s) | 247, 955, 1687 |
| BsiSI | CCGG | 5 cut(s) | 139, 185, 798, 831, 1418 |
| BslFI | GGGAC | 3 cut(s) | 141, 345, 1715 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1011 |
| BsmAI | GTCTC | 3 cut(s) | 320, 351, 1562 |
| BsmBI | CGTCTC | 1 cut(s) | 320 |
| BsmFI | GGGAC | 3 cut(s) | 141, 345, 1715 |
| BsmI | GAATGC | 2 cut(s) | 982, 1463 |
| Bsp119I | TTCGAA | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 3 cut(s) | 247, 955, 1687 |
| Bsp13I | TCCGGA | 1 cut(s) | 1417 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 727, 732 |
| Bsp19I | CCATGG | 2 cut(s) | 1512, 2294 |
| BspCNI | CTCAG | 2 cut(s) | 724, 779 |
| BspDI | ATCGAT | 1 cut(s) | 375 |
| BspEI | TCCGGA | 1 cut(s) | 1417 |
| BspFNI | CGCG | 3 cut(s) | 320, 817, 819 |
| BspLI | GGNNCC | 3 cut(s) | 129, 708, 759 |
| BspMI | ACCTGC | 1 cut(s) | 139 |
| BspOI | GCTAGC | 1 cut(s) | 915 |
| BspPI | GGATC | 7 cut(s) | 164, 217, 629, 1409, 1445, 1791, 1967 |
| BspT104I | TTCGAA | 1 cut(s) | 209 |
| BspT107I | GGYRCC | 1 cut(s) | 757 |
| BspTI | CTTAAG | 1 cut(s) | 455 |
| BsrDI | GCAATG | 1 cut(s) | 1314 |
| BsrI | ACTGG | 6 cut(s) | 29, 52, 77, 568, 1054, 1608 |
| BssECI | CCNNGG | 4 cut(s) | 1512, 1732, 1961, 2294 |
| BssNAI | GTATAC | 1 cut(s) | 1601 |
| BssSI | CACGAG | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 2 cut(s) | 1512, 2294 |
| Bst1107I | GTATAC | 1 cut(s) | 1601 |
| Bst2BI | CACGAG | 1 cut(s) | 240 |
| Bst2UI | CCWGG | 1 cut(s) | 1734 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 1135, 1861 |
| Bst6I | CTCTTC | 5 cut(s) | 64, 845, 1365, 1618, 2090 |
| BstAFI | CTTAAG | 1 cut(s) | 455 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 421 |
| BstBAI | YACGTR | 1 cut(s) | 1077 |
| BstBI | TTCGAA | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 2 cut(s) | 136, 913 |
| BstDEI | CTNAG | 5 cut(s) | 711, 727, 732, 766, 1224 |
| BstDSI | CCRYGG | 2 cut(s) | 1512, 2294 |
| BstEII | GGTNACC | 1 cut(s) | 2301 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1009 |
| BstF5I | GGATG | 6 cut(s) | 550, 679, 1015, 1063, 1996, 2018 |
| BstFNI | CGCG | 3 cut(s) | 320, 817, 819 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 2 cut(s) | 819, 830 |
| BstMAI | GTCTC | 3 cut(s) | 320, 351, 1562 |
| BstNI | CCWGG | 1 cut(s) | 1734 |
| BstNSI | RCATGY | 2 cut(s) | 1033, 1999 |
| BstPI | GGTNACC | 1 cut(s) | 2301 |
| BstSCI | CCNGG | 2 cut(s) | 797, 1732 |
| BstSLI | GKGCMC | 1 cut(s) | 247 |
| BstSNI | TACGTA | 1 cut(s) | 1077 |
| BstUI | CGCG | 3 cut(s) | 320, 817, 819 |
| BstV1I | GCAGC | 5 cut(s) | 223, 1001, 1472, 1642, 1803 |
| BstV2I | GAAGAC | 1 cut(s) | 321 |
| BstX2I | RGATCY | 4 cut(s) | 222, 835, 1608, 1972 |
| BstYI | RGATCY | 4 cut(s) | 222, 835, 1608, 1972 |
| BstZ17I | GTATAC | 1 cut(s) | 1601 |
| Bsu15I | ATCGAT | 1 cut(s) | 375 |
| BsuI | GTATCC | 1 cut(s) | 1162 |
| BsuTUI | ATCGAT | 1 cut(s) | 375 |
| BtgI | CCRYGG | 2 cut(s) | 1512, 2294 |
| BtgZI | GCGATG | 3 cut(s) | 435, 1118, 1947 |
| BtrI | CACGTC | 1 cut(s) | 2105 |
| BtsCI | GGATG | 6 cut(s) | 550, 679, 1015, 1063, 1996, 2018 |
| BtsI | GCAGTG | 1 cut(s) | 903 |
| BtsIMutI | CAGTG | 1 cut(s) | 903 |
| BveI | ACCTGC | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 2 cut(s) | 136, 913 |
| CfoI | GCGC | 2 cut(s) | 819, 830 |
| Cfr13I | GGNCC | 1 cut(s) | 128 |
| ClaI | ATCGAT | 1 cut(s) | 375 |
| CseI | GACGC | 2 cut(s) | 218, 326 |
| Csp6I | GTAC | 6 cut(s) | 108, 148, 758, 1053, 1362, 2114 |
| CviQI | GTAC | 6 cut(s) | 108, 148, 758, 1053, 1362, 2114 |
| DdeI | CTNAG | 5 cut(s) | 711, 727, 732, 766, 1224 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1999 |
| Eam1104I | CTCTTC | 5 cut(s) | 64, 845, 1365, 1618, 2090 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1999 |
| EarI | CTCTTC | 5 cut(s) | 64, 845, 1365, 1618, 2090 |
| EciI | GGCGGA | 2 cut(s) | 338, 2049 |
| Ecl136II | GAGCTC | 1 cut(s) | 1685 |
| Eco105I | TACGTA | 1 cut(s) | 1077 |
| Eco130I | CCWWGG | 2 cut(s) | 1512, 2294 |
| Eco24I | GRGCYC | 1 cut(s) | 1687 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 128 |
| Eco53kI | GAGCTC | 1 cut(s) | 1685 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 1407 |
| Eco91I | GGTNACC | 1 cut(s) | 2301 |
| EcoICRI | GAGCTC | 1 cut(s) | 1685 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1009 |
| EcoO109I | RGGNCCY | 1 cut(s) | 128 |
| EcoO65I | GGTNACC | 1 cut(s) | 2301 |
| EcoRI | GAATTC | 2 cut(s) | 142, 662 |
| EcoRII | CCWGG | 1 cut(s) | 1732 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| EcoT14I | CCWWGG | 2 cut(s) | 1512, 2294 |
| EcoT38I | GRGCYC | 1 cut(s) | 1687 |
| ErhI | CCWWGG | 2 cut(s) | 1512, 2294 |
| Esp3I | CGTCTC | 1 cut(s) | 320 |
| FaqI | GGGAC | 3 cut(s) | 141, 345, 1715 |
| FauI | CCCGC | 1 cut(s) | 118 |
| FbaI | TGATCA | 1 cut(s) | 649 |
| FblI | GTMKAC | 1 cut(s) | 1600 |
| Fnu4HI | GCNGC | 7 cut(s) | 123, 237, 321, 990, 1461, 1656, 1817 |
| FokI | GGATG | 6 cut(s) | 557, 686, 1002, 1070, 2003, 2025 |
| FriOI | GRGCYC | 1 cut(s) | 1687 |
| Fsp4HI | GCNGC | 7 cut(s) | 123, 237, 321, 990, 1461, 1656, 1817 |
| FspBI | CTAG | 5 cut(s) | 254, 618, 912, 1338, 1820 |
| GlaI | GCGC | 2 cut(s) | 818, 829 |
| GluI | GCNGC | 7 cut(s) | 123, 237, 321, 990, 1461, 1656, 1817 |
| GsaI | CCCAGC | 1 cut(s) | 2166 |
| GsuI | CTGGAG | 1 cut(s) | 1625 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HapII | CCGG | 5 cut(s) | 139, 185, 798, 831, 1418 |
| HgaI | GACGC | 2 cut(s) | 218, 326 |
| HhaI | GCGC | 2 cut(s) | 819, 830 |
| Hin6I | GCGC | 2 cut(s) | 817, 828 |
| HinP1I | GCGC | 2 cut(s) | 817, 828 |
| HincII | GTYRAC | 2 cut(s) | 1441, 1947 |
| HindII | GTYRAC | 2 cut(s) | 1441, 1947 |
| HindIII | AAGCTT | 2 cut(s) | 1263, 1764 |
| HpaI | GTTAAC | 1 cut(s) | 1441 |
| HpaII | CCGG | 5 cut(s) | 139, 185, 798, 831, 1418 |
| Hpy166II | GTNNAC | 7 cut(s) | 9, 245, 772, 1441, 1537, 1601, 1947 |
| Hpy188I | TCNGA | 7 cut(s) | 282, 370, 583, 649, 1212, 1954, 1962 |
| Hpy8I | GTNNAC | 7 cut(s) | 9, 245, 772, 1441, 1537, 1601, 1947 |
| HpyAV | CCTTC | 8 cut(s) | 73, 482, 602, 628, 1731, 2099, 2135, 2186 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 1135, 1861 |
| HpyCH4IV | ACGT | 5 cut(s) | 397, 1076, 2104, 2116, 2250 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 245, 948, 980, 1234, 1727, 1790, 2023 |
| HpyF3I | CTNAG | 5 cut(s) | 711, 727, 732, 766, 1224 |
| HpySE526I | ACGT | 5 cut(s) | 397, 1076, 2104, 2116, 2250 |
| HspAI | GCGC | 2 cut(s) | 817, 828 |
| Kpn2I | TCCGGA | 1 cut(s) | 1417 |
| KpnI | GGTACC | 1 cut(s) | 761 |
| Ksp22I | TGATCA | 1 cut(s) | 649 |
| KspAI | GTTAAC | 1 cut(s) | 1441 |
| LmnI | GCTCC | 3 cut(s) | 893, 1682, 1690 |
| Lsp1109I | GCAGC | 5 cut(s) | 223, 1001, 1472, 1642, 1803 |
| LweI | GCATC | 6 cut(s) | 458, 1024, 1186, 1372, 1714, 2010 |
| MaeI | CTAG | 5 cut(s) | 254, 618, 912, 1338, 1820 |
| MaeII | ACGT | 5 cut(s) | 397, 1076, 2104, 2116, 2250 |
| MaeIII | GTNAC | 6 cut(s) | 496, 611, 1045, 1501, 1936, 2301 |
| MflI | RGATCY | 4 cut(s) | 222, 835, 1608, 1972 |
| MhlI | GDGCHC | 3 cut(s) | 247, 955, 1687 |
| MlyI | GAGTC | 1 cut(s) | 2076 |
| MmeI | TCCRAC | 1 cut(s) | 1660 |
| MroI | TCCGGA | 1 cut(s) | 1417 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1034 |
| MspCI | CTTAAG | 1 cut(s) | 455 |
| MspI | CCGG | 5 cut(s) | 139, 185, 798, 831, 1418 |
| MspR9I | CCNGG | 2 cut(s) | 799, 1734 |
| Mva1269I | GAATGC | 2 cut(s) | 982, 1463 |
| MvaI | CCWGG | 1 cut(s) | 1734 |
| MvnI | CGCG | 3 cut(s) | 320, 817, 819 |
| NciI | CCSGG | 1 cut(s) | 799 |
| NcoI | CCATGG | 2 cut(s) | 1512, 2294 |
| NheI | GCTAGC | 1 cut(s) | 911 |
| NlaIV | GGNNCC | 3 cut(s) | 129, 708, 759 |
| NmuCI | GTSAC | 2 cut(s) | 1501, 1936 |
| NspI | RCATGY | 2 cut(s) | 1033, 1999 |
| NspV | TTCGAA | 1 cut(s) | 209 |
| PciI | ACATGT | 2 cut(s) | 1029, 1995 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 103, 1073 |
| PctI | GAATGC | 2 cut(s) | 982, 1463 |
| PkrI | GCNGC | 7 cut(s) | 124, 238, 322, 991, 1462, 1657, 1818 |
| PleI | GAGTC | 1 cut(s) | 2076 |
| PpsI | GAGTC | 1 cut(s) | 2076 |
| Ppu21I | YACGTR | 1 cut(s) | 1077 |
| PpuMI | RGGWCCY | 1 cut(s) | 128 |
| PscI | ACATGT | 2 cut(s) | 1029, 1995 |
| PsiI | TTATAA | 1 cut(s) | 1644 |
| Psp124BI | GAGCTC | 1 cut(s) | 1687 |
| Psp5II | RGGWCCY | 1 cut(s) | 128 |
| Psp6I | CCWGG | 1 cut(s) | 1732 |
| PspEI | GGTNACC | 1 cut(s) | 2301 |
| PspFI | CCCAGC | 1 cut(s) | 2162 |
| PspGI | CCWGG | 1 cut(s) | 1732 |
| PspN4I | GGNNCC | 3 cut(s) | 129, 708, 759 |
| PspPI | GGNCC | 1 cut(s) | 128 |
| PspPPI | RGGWCCY | 1 cut(s) | 128 |
| PsuI | RGATCY | 4 cut(s) | 222, 835, 1608, 1972 |
| RsaI | GTAC | 6 cut(s) | 109, 149, 759, 1054, 1363, 2115 |
| RsaNI | GTAC | 6 cut(s) | 108, 148, 758, 1053, 1362, 2114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SacI | GAGCTC | 1 cut(s) | 1687 |
| SatI | GCNGC | 7 cut(s) | 123, 237, 321, 990, 1461, 1656, 1817 |
| Sau96I | GGNCC | 1 cut(s) | 128 |
| SchI | GAGTC | 1 cut(s) | 2076 |
| ScrFI | CCNGG | 2 cut(s) | 799, 1734 |
| SduI | GDGCHC | 3 cut(s) | 247, 955, 1687 |
| SfaNI | GCATC | 6 cut(s) | 458, 1024, 1186, 1372, 1714, 2010 |
| SfuI | TTCGAA | 1 cut(s) | 209 |
| SinI | GGWCC | 1 cut(s) | 128 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SmlI | CTYRAG | 5 cut(s) | 455, 871, 1272, 1593, 1691 |
| SmoI | CTYRAG | 5 cut(s) | 455, 871, 1272, 1593, 1691 |
| SnaBI | TACGTA | 1 cut(s) | 1077 |
| SspI | AATATT | 1 cut(s) | 1648 |
| SspMI | CTAG | 5 cut(s) | 254, 618, 912, 1338, 1820 |
| SstI | GAGCTC | 1 cut(s) | 1687 |
| StyD4I | CCNGG | 2 cut(s) | 797, 1732 |
| StyI | CCWWGG | 2 cut(s) | 1512, 2294 |
| TaaI | ACNGT | 3 cut(s) | 118, 1135, 1861 |
| TaiI | ACGT | 5 cut(s) | 400, 1079, 2107, 2119, 2253 |
| TauI | GCSGC | 2 cut(s) | 125, 323 |
| TscAI | CASTG | 1 cut(s) | 903 |
| TseFI | GTSAC | 2 cut(s) | 1501, 1936 |
| TseI | GCWGC | 5 cut(s) | 236, 989, 1460, 1655, 1816 |
| Tsp45I | GTSAC | 2 cut(s) | 1501, 1936 |
| TspGWI | ACGGA | 4 cut(s) | 216, 262, 1070, 1364 |
| TspRI | CASTG | 1 cut(s) | 903 |
| Vha464I | CTTAAG | 1 cut(s) | 455 |
| VneI | GTGCAC | 1 cut(s) | 243 |
| VpaK11BI | GGWCC | 1 cut(s) | 128 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1009 |
| XapI | RAATTY | 5 cut(s) | 100, 142, 662, 865, 1330 |
| XceI | RCATGY | 2 cut(s) | 1033, 1999 |
| XmiI | GTMKAC | 1 cut(s) | 1600 |
| XspI | CTAG | 5 cut(s) | 254, 618, 912, 1338, 1820 |