Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Forward (+)

16503950 .. 16505877

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1106100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACAAGTACTACCCGGATCCGACGGACGACGACCCTGCTCGAAGCCCCGAAAGACTCGGGTTACAGAGTGTCCAAGTTCCAACAAATCCAGTGGCAGTTTTCGCGCCACCACAAGCTCGAGGAGGAAGAGTATTTGAAGCAGCAGGACACCTTCCTCAATGCCATTGCTGATGTGGAGGACGTGCCGGAGAATTCTAATTTCGTAATTCATAACAACTCCGGTGACGATTTGTTCGGCGACATCGACCAAGTGGTTGCCTTGAAACGCAAGGAGTTTGTGAAGCAAGGGCTTCTGAAACCAAACCCTAAGAAGGAGATTATGGCGGTGGATAAGCTGGACCCTGAGGAGGTGGTGGATTTGGAGGAGATTGAAGAGCTTCAAGGGATTAAGGTCGTCAGCAAGCACAAAAAGGACGACCGGCCGGAGAAATTCAATCCCAAGGACATTCGACTTCCTCTAGATCAAAACATGACCAAACGAACGAATTTTGGAGTGATTCAAATTGGAGGACGTTCCTATGTGTCTTGGTGTGCTTGTATAAAAATTTGGGATTTTTCTACCAAGCGGTTATTTTCTGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

196

Amino Acids

22.67

Weight (kDa)

6.14

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AciI	CCGC	2 cut(s)	326, 568
AclWI	GGATC	2 cut(s)	13, 26
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	4 cut(s)	193, 431, 487, 546
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	313, 349
AgsI	TTSAA	6 cut(s)	139, 265, 374, 383, 436, 503
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	3 cut(s)	118, 337, 379
AluI	AGCT	3 cut(s)	118, 337, 379
AlwI	GGATC	2 cut(s)	13, 26
Ama87I	CYCGRG	2 cut(s)	58, 119
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	4 cut(s)	193, 431, 487, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	2 cut(s)	58, 119
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	461
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	58, 119
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	20, 342
BmrFI	CCNGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 349
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	313, 349
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	3 cut(s)	137, 362, 380
BseX3I	CGGCCG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	106
Bsh1285I	CGRYCG	2 cut(s)	421, 425
BshFI	GGCC	1 cut(s)	424
BsiEI	CGRYCG	2 cut(s)	421, 425
BsiHKCI	CYCGRG	2 cut(s)	58, 119
BsiSI	CCGG	5 cut(s)	16, 188, 222, 421, 425
BslI	CCNNNNNNNGG	2 cut(s)	313, 349
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	2 cut(s)	58, 119
Bsp143I	GATC	2 cut(s)	18, 463
BspACI	CCGC	2 cut(s)	326, 568
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	20, 342
BspPI	GGATC	2 cut(s)	13, 26
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	18, 463
BssT1I	CCWWGG	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	123, 369
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	309, 345
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	21, 466
BstMBI	GATC	2 cut(s)	18, 463
BstMCI	CGRYCG	2 cut(s)	421, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	424
BtrI	CACGTC	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	9
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	1 cut(s)	472
CviJI	RGCY	6 cut(s)	47, 118, 292, 337, 379, 424
CviKI_1	RGCY	6 cut(s)	47, 118, 292, 337, 379, 424
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	309, 345
DpnI	GATC	2 cut(s)	20, 465
DpnII	GATC	2 cut(s)	18, 463
EaeI	YGGCCR	1 cut(s)	422
EagI	CGGCCG	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	123, 369
EarI	CTCTTC	2 cut(s)	123, 369
EclXI	CGGCCG	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	2 cut(s)	58, 119
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	475
FaiI	YATR	5 cut(s)	213, 323, 473, 522, 542
FatI	CATG	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	5 cut(s)	16, 188, 222, 421, 425
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	56, 499
HpaII	CCGG	5 cut(s)	16, 188, 222, 421, 425
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	23, 297
Hpy188III	TCNNGA	1 cut(s)	461
Hpy99I	CGWCG	2 cut(s)	27, 34
HpyAV	CCTTC	2 cut(s)	163, 307
HpyCH4IV	ACGT	2 cut(s)	183, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	309, 345
HpySE526I	ACGT	2 cut(s)	183, 514
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	18, 463
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	183, 514
MaeIII	GTNAC	2 cut(s)	62, 224
MalI	GATC	2 cut(s)	20, 465
MboI	GATC	2 cut(s)	18, 463
MboII	GAAGA	2 cut(s)	140, 386
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	7 cut(s)	193, 199, 207, 431, 487, 504, 546
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	46, 106
MnlI	CCTC	9 cut(s)	115, 118, 167, 172, 340, 343, 358, 468, 503
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	390, 586
MspI	CCGG	5 cut(s)	16, 188, 222, 421, 425
MspR9I	CCNGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	18, 463
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	2 cut(s)	20, 342
NmuCI	GTSAC	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	20, 342
PspPI	GGNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	390, 586
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	18, 463
Sau96I	GGNCC	1 cut(s)	340
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	8 cut(s)	120, 155, 186, 339, 354, 381, 396, 517
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	193, 199, 207, 431, 487, 504, 546
SsiI	CCGC	2 cut(s)	326, 568
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	2 cut(s)	186, 517
TaqI	TCGA	4 cut(s)	42, 120, 246, 451
TasI	AATT	7 cut(s)	193, 199, 207, 431, 487, 504, 546
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	390, 586
Tru9I	TTAA	2 cut(s)	390, 586
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	4 cut(s)	193, 431, 487, 546
XbaI	TCTAGA	1 cut(s)	460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.