Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8184758.1

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 605

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8184758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgatggcgaagattgcaacagataaaagtgatgtgacaatactgacatctgacaatccaaagaatgaagatccattggacatcttggatgatatgctggctggtataggatggacaatgcaggaatacttgaaacatggcgagaatgattactacccacctcttccaaatggtcataggattttcctgcatgatataagacgagtagccgtacggtgtgctgttgccatgggtgaggaaggtgatatggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

84

Amino Acids

9.46

Weight (kDa)

4.63

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	133
AlwI	GGATC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	245
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	94, 116
BsiWI	CGTACG	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	94, 116
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	94, 116
Cac8I	GCNNGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	137, 191, 229
CviJI	RGCY	2 cut(s)	101, 209
CviKI_1	RGCY	2 cut(s)	101, 209
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	140, 194, 232
FaiI	YATR	8 cut(s)	95, 107, 138, 177, 192, 197, 230, 248
FatI	CATG	3 cut(s)	136, 190, 228
FokI	GGATG	2 cut(s)	101, 123
Hin1II	CATG	3 cut(s)	140, 194, 232
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	17, 121, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	140, 194, 232
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	83, 87, 107, 200
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	22, 80, 155
MflI	RGATCY	1 cut(s)	70
MnlI	CCTC	2 cut(s)	171, 229
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	140, 194, 232
NmuCI	GTSAC	1 cut(s)	34
Pfl23II	CGTACG	1 cut(s)	211
PspLI	CGTACG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	2 cut(s)	163, 244
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.