Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Forward (+)

54854723 .. 54857170

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGAAGATTGCAACAGATAAAAGTGATGTGACAATCCTGACATCTGACAATCCAAAGAATGAAGATCCATTGGACATCTTGGATGATATGCTGGCTGGGATAGGATGGACAATGCAGGAACACTTGAAACATAGCGAGAATGATTACTACCCACCTCTTCCATATGGTCGTGGTTGCTGGCAAAGGCCAAAAGCATATCAGATAGAAGGGGACCAAAAACAGTTCTTTTTGATAACTGGGAAGAGTGTTGAGAGGCATTGCAGTATGTTGACGAGCTTCACCAAGCTGGAATTGACACAAGTGAATTCCCATGGAGGTGTGAATGATGTAGAATTTGTGTTAAGGCAGTCAGATAGTGGCTTCTTGGATGTTGTTCGACAGACTCCTTTGTCTAGCAGCTGCTTTGTCAGTTACATTAGGTACCTGAAGCCCCCAGACAATCTTCTTCAAGGTTCAATACAAACTGGTCTCAAGGAATGCCAGGGGTTATGCTTGCAATTTTTCTCCTGTACTGAACACATATTGCCCGTATCAGGTAGGGAGGAAGCCGCTGCTTTCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

190

Amino Acids

21.29

Weight (kDa)

5.07

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	307, 335
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	425, 514
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	3 cut(s)	130, 452, 459
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	3 cut(s)	279, 289, 402
AluI	AGCT	3 cut(s)	279, 289, 402
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	399, 402, 554
ApoI	RAATTY	2 cut(s)	307, 335
Asp718I	GGTACC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	389, 411, 541
BccI	CCATC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	4 cut(s)	400, 403, 552, 555
BlsI	GCNGC	4 cut(s)	401, 404, 553, 556
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	215, 425
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	313, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	244, 472
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	313, 484
BseGI	GGATG	3 cut(s)	91, 113, 376
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	244, 472
BseXI	GCAGC	3 cut(s)	389, 411, 541
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	215, 425
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	244, 472
BssECI	CCNNGG	2 cut(s)	313, 484
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	2 cut(s)	165, 239
BstC8I	GCNNGC	3 cut(s)	96, 182, 497
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	91, 113, 376
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	389, 411, 541
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	91, 113, 376
Cac8I	GCNNGC	3 cut(s)	96, 182, 497
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	424, 513
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	8 cut(s)	98, 190, 279, 289, 363, 402, 433, 551
CviKI_1	RGCY	8 cut(s)	98, 190, 279, 289, 363, 402, 433, 551
CviQI	GTAC	2 cut(s)	424, 513
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	165, 239
EarI	CTCTTC	2 cut(s)	165, 239
Eco130I	CCWWGG	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	317
FaiI	YATR	9 cut(s)	92, 135, 166, 168, 199, 269, 315, 493, 524
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	400, 403, 552, 555
FokI	GGATG	3 cut(s)	98, 120, 383
Fsp4HI	GCNGC	4 cut(s)	400, 403, 552, 555
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	4 cut(s)	400, 403, 552, 555
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	49, 204, 355
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	14, 118, 264, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	317
KpnI	GGTACC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	67
Lsp1109I	GCAGC	3 cut(s)	389, 411, 541
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	31, 413
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	6 cut(s)	19, 77, 152, 256, 437, 440
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	4 cut(s)	293, 307, 335, 500
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	168, 249, 311, 538
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	402, 554
MspR9I	CCNGG	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	215, 425
NmuCI	GTSAC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	401, 404, 553, 556
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	215, 425
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	402
RsaI	GTAC	2 cut(s)	425, 514
RsaNI	GTAC	2 cut(s)	424, 513
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	4 cut(s)	400, 403, 552, 555
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	485
SetI	ASST	9 cut(s)	160, 281, 291, 322, 404, 425, 429, 457, 541
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	4 cut(s)	293, 307, 335, 500
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	293, 307, 335, 500
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	399, 402, 554
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	307, 335
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.