Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Reverse (-)

14915550 .. 14920391

Gene Structure 4842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG166600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGGCCTTCACTTTCCTCTCAATCCCTCACTTTCTCTCTCCCCAACCCAACTTTCTCTCTCTAAAACCCCAATTCGCCTCTCTCCGACCCTCCAGCTTCCCTCTCCCGGCCCGCCCACTCAAACCCGCCCACGCAATCGGCCCCGACGGCAAGTACTACCCGGACCCCTCCGACGACGACCCGCCCGAAGCCCCCGAAGACTCCGGCCACGGCGTCTCCAAATTCCAGCAAATCCAGCGCCAGGCCTCCCGCCACCAGAAGCTCCAGGAGGACGACTTCAAGAAGCACCAGAACACCATGCTCTCCGCCATTGCCGACGTCGAGGACCCGCCGGAGAACCCCGGCTCCGGAACTGCCCCCAGCTCCGGGGACGATTTGTTCGGCGACATCGACGAAGCTATTGCCTTGAAGCGCAAGGAGTTTGTGAAGCAAGGGCTTTTGAAGCCGAACCCTAAGGTGGAGGCGGTGGAGGAGCTGGAGCTGGAGCCGGAGGAGGTGGTGGACTTGGAGGAGATTGATGAACTTCAGGGGCTGGCGATTGTGGGTGAGGATTCGGATGAGGAAGGGACTGAGAAATTCGACTCAAAGGTTGGTGATTTGGATGAGAAAGATGGTGTTTCAGTTTCGAGTTCTTTGTTTGATATGGATTTTGATAATTATGGTAAGACTAGGGCTAGAATTGTGGAACCTAAGTTTAAAATGAGCTTAGCTGAGCTTTTGGATGAGAGTAAAGTGGTGCCTATTTCGGTTTATGGTGATTTAGAGGTGGAGATAACCGGAATTCAGCACGATTCGAGGGTGGTCAGTGCCGGGGATTTGTTTGTGTGCTGTGTTGGGAGGAAAACCGATGGTCATTTGTATTTGAGTGAGGCTATTAAGAGAGGAGCGGTGGCTGTAGTAGCTAGTAAGGAGATATACATGGAGGAAAGCTTGGGGTGCAAGGCATTGGTCATTGTGGAAGATACCAATGCTGATTTACCGGCATTGGCTGCATCGTTTTATAGGTATCCGTCGAAGAATATGTCGGTGATTGGGATAACGGGGACGAATGGGAAGACGACGTCAGCATATTTGATAAAGGGGATGTATGAAGCAATGGGATTGAGGACGGGTATGTTGAGCACAGTTGCGTATTACGTTCATGGAGATAATAAGTTGGAGTCGCCTAATACAACCCCGGATGCTGTTTTGGTTCAAAATATGATGGCCAAGATGCTCCATAATGGGGCTGAAGCAGTTGTCATGGAGGCTTCTTCTCACGGGCTAGCTTTGTCTAGGTGTGATGAAGTTGATATTGACATAGCGGTTTTTACAAATTTGACGAGAGACCATTTGGATTTTCAGGTGACTGAGGAGGAGTATAGGGAGGCAAAGGGTAAGTTGTTTTCAAGGATGGTTGATCCAGAACGGCACAGGAAAGTTGTCAACATTGATGACCCAAATGCACCATTCTTCATTTCACAGGGGAACCCAGATGTTCCAGTTGTGACCTTTGCCATGGAGAATAAGAATGCAGATGTCTATCCCTTGAAGTTTGAACTTTCCTTGTTTGAGACACAGGTTTTAGTCAATACTCCCAATGGTATATTGGAGATATCATCAGGGTTGCTTGGACGGCATAACATTTACAATATACTGGCTGCAGTAGCAGTTGGGATTGCAGTTGGAGCACCATTAGAAGACATCGTTAGGGGAATTGAAGAGGTTGATGCTGTTCCAGGGAGGTGTGAGTTGATAGACGAGGAACAGGCGTTTGGTGTGATTGTGGATTATGCTCACACTCCTGATGCCTTGTCCAGGCTATTGGATTCTGTACGAGAGCTTGGTGCAAGGAGGATTATTACTGTAATCGGTTGTCCTGGGGAGAGTGACAGAGGGAAAAGACCTATGATGGCGAAGATTGCAACAGATAAAAGTGATGTGACAATACTGACATCTGACAATCCAAAGAATGAAGATCCATGTATGTATAGCAAACTCCAGATTATAAAACTATGGTATAGTTGTTTTTGCATGCTACCATTGATTTTGAGGGAACAATTAGTTGACTCTTATAGATGTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

689

Amino Acids

75.8

Weight (kDa)

4.7

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mur_ligase	PF01225	257 - 319	2.2e-08	Mur ligase family, catalytic domain
Mur_ligase_M	PF08245	346 - 551	7.5e-54	Mur ligase middle domain
Mur_ligase_C	PF02875	574 - 654	2.8e-19	Mur ligase, glutamate ligase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1988
AatII	GACGTC	2 cut(s)	321, 1064
AccB1I	GGYRCC	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	887
AccIII	TCCGGA	1 cut(s)	347
AciI	CCGC	9 cut(s)	112, 126, 182, 250, 306, 329, 464, 887, 1304
AclWI	GGATC	2 cut(s)	1394, 1952
AcoI	YGGCCR	2 cut(s)	205, 1206
AcsI	RAATTY	4 cut(s)	221, 575, 780, 1315
AcuI	CTGAAG	2 cut(s)	509, 1251
AcyI	GRCGYC	3 cut(s)	213, 318, 1061
AfaI	GTAC	2 cut(s)	155, 1815
AfiI	CCNNNNNNNGG	8 cut(s)	106, 241, 347, 365, 366, 457, 1225, 1797
AgsI	TTSAA	8 cut(s)	280, 409, 442, 1196, 1389, 1531, 1538, 1700
AjnI	CCWGG	5 cut(s)	240, 264, 1717, 1796, 1858
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 1737, 1769
AloI	GAACNNNNNNTCC	4 cut(s)	329, 361, 362, 394
Alw21I	GWGCWC	2 cut(s)	1124, 1672
Alw26I	GTCTC	3 cut(s)	220, 1320, 1547
AlwI	GGATC	2 cut(s)	1394, 1952
AlwNI	CAGNNNCTG	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	347
AoxI	GGCC	6 cut(s)	3, 108, 139, 205, 243, 1206
ApeKI	GCWGC	2 cut(s)	989, 1640
ApoI	RAATTY	4 cut(s)	221, 575, 780, 1315
ArsI	GACNNNNNNTTYG	4 cut(s)	362, 394, 1007, 1039
AspLEI	GCGC	2 cut(s)	240, 414
AspS9I	GGNCC	4 cut(s)	109, 140, 163, 325
AsuC2I	CCSGG	6 cut(s)	107, 161, 342, 367, 811, 1178
AsuHPI	GGTGA	5 cut(s)	557, 605, 767, 1039, 1357
AsuNHI	GCTAGC	1 cut(s)	1264
AvaII	GGWCC	2 cut(s)	163, 325
AxyI	CCTNAGG	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	1208
BanI	GGYRCC	1 cut(s)	736
BbsI	GAAGAC	3 cut(s)	204, 1061, 1686
Bbv12I	GWGCWC	2 cut(s)	1124, 1672
BbvI	GCAGC	2 cut(s)	976, 1627
BccI	CCATC	5 cut(s)	605, 842, 1198, 1387, 1885
BceAI	ACGGC	4 cut(s)	163, 226, 1424, 1631
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	5 cut(s)	242, 266, 1719, 1798, 1860
BciVI	GTATCC	1 cut(s)	1017
BcnI	CCSGG	6 cut(s)	107, 161, 342, 367, 811, 1178
BcoDI	GTCTC	3 cut(s)	220, 1320, 1547
BfaI	CTAG	5 cut(s)	669, 675, 903, 1265, 1275
BfmI	CTRYAG	2 cut(s)	894, 1641
BfoI	RGCGCY	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	1017
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	990, 1641
BlpI	GCTNAGC	2 cut(s)	706, 711
BlsI	GCNGC	2 cut(s)	991, 1642
BmcAI	AGTACT	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	163, 325
BmgT120I	GGNCC	4 cut(s)	109, 140, 163, 325
BmiI	GGNNCC	8 cut(s)	142, 165, 327, 346, 486, 687, 738, 1469
BmsI	GCATC	5 cut(s)	1001, 1171, 1203, 1699, 1777
BmtI	GCTAGC	1 cut(s)	1268
BpiI	GAAGAC	3 cut(s)	204, 1061, 1686
BpmI	CTGGAG	5 cut(s)	76, 248, 497, 503, 1964
Bpu1102I	GCTNAGC	2 cut(s)	706, 711
BpuMI	CCSGG	6 cut(s)	107, 161, 342, 367, 811, 1178
BsaBI	GATNNNNATC	1 cut(s)	1521
BsaHI	GRCGYC	3 cut(s)	213, 318, 1061
BsaI	GGTCTC	1 cut(s)	1320
BsaJI	CCNNGG	8 cut(s)	208, 340, 366, 810, 1176, 1497, 1718, 1859
BsaWI	WCCGGW	2 cut(s)	347, 776
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 329, 359
Bsc4I	CCNNNNNNNGG	8 cut(s)	106, 241, 347, 365, 366, 457, 1225, 1797
Bse118I	RCCGGY	1 cut(s)	979
Bse1I	ACTGG	2 cut(s)	1481, 1641
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	2 cut(s)	309, 1101
Bse8I	GATNNNNATC	1 cut(s)	1521
BseAI	TCCGGA	1 cut(s)	347
BseBI	CCWGG	5 cut(s)	242, 266, 1719, 1798, 1860
BseDI	CCNNGG	8 cut(s)	208, 340, 366, 810, 1176, 1497, 1718, 1859
BseGI	GGATG	6 cut(s)	562, 607, 727, 1089, 1186, 1398
BseJI	GATNNNNATC	1 cut(s)	1521
BseLI	CCNNNNNNNGG	8 cut(s)	106, 241, 347, 365, 366, 457, 1225, 1797
BseMI	GCAATG	2 cut(s)	309, 1101
BseMII	CTCAG	3 cut(s)	561, 702, 1341
BseNI	ACTGG	2 cut(s)	1481, 1641
BseRI	GAGGAG	6 cut(s)	485, 506, 524, 897, 1367, 1370
BseXI	GCAGC	2 cut(s)	976, 1627
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	6 cut(s)	5, 110, 141, 207, 245, 1208
BshNI	GGYRCC	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	1124, 1672
BslFI	GGGAC	3 cut(s)	383, 580, 1057
BslI	CCNNNNNNNGG	8 cut(s)	106, 241, 347, 365, 366, 457, 1225, 1797
BsmAI	GTCTC	3 cut(s)	220, 1320, 1547
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	3 cut(s)	383, 580, 1057
BsmI	GAATGC	1 cut(s)	1516
BsnI	GGCC	6 cut(s)	5, 110, 141, 207, 245, 1208
Bso31I	GGTCTC	1 cut(s)	1320
Bsp1286I	GDGCHC	2 cut(s)	1124, 1672
Bsp13I	TCCGGA	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	1399, 1957
Bsp1720I	GCTNAGC	2 cut(s)	706, 711
Bsp19I	CCATGG	1 cut(s)	1497
BspACI	CCGC	9 cut(s)	112, 126, 182, 250, 306, 329, 464, 887, 1304
BspANI	GGCC	6 cut(s)	5, 110, 141, 207, 245, 1208
BspCNI	CTCAG	3 cut(s)	562, 703, 1342
BspEI	TCCGGA	1 cut(s)	347
BspLI	GGNNCC	8 cut(s)	142, 165, 327, 346, 486, 687, 738, 1469
BspMAI	CTGCAG	1 cut(s)	1645
BspOI	GCTAGC	1 cut(s)	1268
BspPI	GGATC	2 cut(s)	1394, 1952
BspT107I	GGYRCC	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	1320
BsrBI	CCGCTC	1 cut(s)	887
BsrDI	GCAATG	2 cut(s)	309, 1101
BsrFI	RCCGGY	1 cut(s)	979
BsrI	ACTGG	2 cut(s)	1481, 1641
BssAI	RCCGGY	1 cut(s)	979
BssECI	CCNNGG	8 cut(s)	208, 340, 366, 810, 1176, 1497, 1718, 1859
BssMI	GATC	2 cut(s)	1399, 1957
BssNI	GRCGYC	3 cut(s)	213, 318, 1061
BssT1I	CCWWGG	1 cut(s)	1497
Bst2UI	CCWGG	5 cut(s)	242, 266, 1719, 1798, 1860
Bst4CI	ACNGT	2 cut(s)	1126, 1846
Bst6I	CTCTTC	1 cut(s)	1695
BstACI	GRCGYC	3 cut(s)	213, 318, 1061
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	4 cut(s)	112, 534, 1266, 2015
BstDEI	CTNAG	6 cut(s)	453, 570, 690, 706, 711, 1350
BstDSI	CCRYGG	2 cut(s)	208, 1497
BstENI	CCTNNNNNAGG	1 cut(s)	1795
BstF5I	GGATG	6 cut(s)	562, 607, 727, 1089, 1186, 1398
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 414
BstKTI	GATC	2 cut(s)	1402, 1960
BstMAI	GTCTC	3 cut(s)	220, 1320, 1547
BstMBI	GATC	2 cut(s)	1399, 1957
BstNI	CCWGG	5 cut(s)	242, 266, 1719, 1798, 1860
BstNSI	RCATGY	1 cut(s)	2017
BstSFI	CTRYAG	2 cut(s)	894, 1641
BstV1I	GCAGC	2 cut(s)	976, 1627
BstV2I	GAAGAC	3 cut(s)	204, 1061, 1686
BstX2I	RGATCY	1 cut(s)	1957
BstXI	CCANNNNNNTGG	1 cut(s)	1804
BstYI	RGATCY	1 cut(s)	1957
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	6 cut(s)	5, 110, 141, 207, 245, 1208
BtgI	CCRYGG	2 cut(s)	208, 1497
BtsCI	GGATG	6 cut(s)	562, 607, 727, 1089, 1186, 1398
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	4 cut(s)	112, 534, 1266, 2015
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	2 cut(s)	240, 414
Cfr10I	RCCGGY	1 cut(s)	979
Cfr13I	GGNCC	4 cut(s)	109, 140, 163, 325
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	154, 1814
CviAII	CATG	7 cut(s)	298, 919, 1142, 1243, 1498, 1962, 2014
CviQI	GTAC	2 cut(s)	154, 1814
DdeI	CTNAG	6 cut(s)	453, 570, 690, 706, 711, 1350
DpnI	GATC	2 cut(s)	1401, 1959
DpnII	GATC	2 cut(s)	1399, 1957
DraI	TTTAAA	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	205, 1206
Eam1104I	CTCTTC	1 cut(s)	1695
EarI	CTCTTC	1 cut(s)	1695
EciI	GGCGGA	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	1497
Eco147I	AGGCCT	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	1320
Eco32I	GATATC	1 cut(s)	1596
Eco47I	GGWCC	2 cut(s)	163, 325
Eco57I	CTGAAG	2 cut(s)	509, 1251
Eco81I	CCTNAGG	1 cut(s)	453
EcoNI	CCTNNNNNAGG	1 cut(s)	1795
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	5 cut(s)	240, 264, 1717, 1796, 1858
EcoRV	GATATC	1 cut(s)	1596
EcoT14I	CCWWGG	1 cut(s)	1497
ErhI	CCWWGG	1 cut(s)	1497
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	7 cut(s)	301, 922, 1145, 1246, 1501, 1965, 2017
FaqI	GGGAC	3 cut(s)	383, 580, 1057
FatI	CATG	7 cut(s)	297, 918, 1141, 1242, 1497, 1961, 2013
FauI	CCCGC	5 cut(s)	119, 133, 189, 257, 336
Fnu4HI	GCNGC	2 cut(s)	990, 1641
FokI	GGATG	6 cut(s)	569, 614, 734, 1096, 1193, 1405
Fsp4HI	GCNGC	2 cut(s)	990, 1641
FspBI	CTAG	5 cut(s)	669, 675, 903, 1265, 1275
GlaI	GCGC	2 cut(s)	239, 413
GluI	GCNGC	2 cut(s)	990, 1641
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	5 cut(s)	76, 248, 497, 503, 1964
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	6 cut(s)	5, 110, 141, 207, 245, 1208
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	2 cut(s)	240, 414
Hin1I	GRCGYC	3 cut(s)	213, 318, 1061
Hin1II	CATG	7 cut(s)	301, 922, 1145, 1246, 1501, 1965, 2017
Hin6I	GCGC	2 cut(s)	238, 412
HinP1I	GCGC	2 cut(s)	238, 412
HincII	GTYRAC	2 cut(s)	1426, 2047
HindII	GTYRAC	2 cut(s)	1426, 2047
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	7 cut(s)	200, 551, 581, 791, 1160, 1808, 2048
HphI	GGTGA	5 cut(s)	557, 605, 767, 1039, 1357
Hpy166II	GTNNAC	3 cut(s)	502, 1426, 2047
Hpy188I	TCNGA	4 cut(s)	86, 172, 556, 1939
Hpy188III	TCNNGA	5 cut(s)	280, 348, 1403, 1784, 1981
Hpy8I	GTNNAC	3 cut(s)	502, 1426, 2047
Hpy99I	CGWCG	8 cut(s)	149, 176, 179, 320, 323, 395, 1015, 1063
HpyAV	CCTTC	2 cut(s)	16, 557
HpyCH4III	ACNGT	2 cut(s)	1126, 1846
HpyCH4IV	ACGT	3 cut(s)	318, 1061, 1137
HpyCH4V	TGCA	9 cut(s)	939, 992, 1445, 1514, 1643, 1661, 1829, 1904, 2013
HpyF3I	CTNAG	6 cut(s)	453, 570, 690, 706, 711, 1350
HpySE526I	ACGT	3 cut(s)	318, 1061, 1137
Hsp92I	GRCGYC	3 cut(s)	213, 318, 1061
Hsp92II	CATG	7 cut(s)	301, 922, 1145, 1246, 1501, 1965, 2017
HspAI	GCGC	2 cut(s)	238, 412
Kpn2I	TCCGGA	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	1399, 1957
LmnI	GCTCC	9 cut(s)	267, 350, 368, 472, 478, 484, 884, 1221, 1667
Lsp1109I	GCAGC	2 cut(s)	976, 1627
LweI	GCATC	5 cut(s)	1001, 1171, 1203, 1699, 1777
MaeI	CTAG	5 cut(s)	669, 675, 903, 1265, 1275
MaeII	ACGT	3 cut(s)	318, 1061, 1137
MaeIII	GTNAC	4 cut(s)	1345, 1486, 1868, 1921
MalI	GATC	2 cut(s)	1401, 1959
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	2 cut(s)	1399, 1957
MflI	RGATCY	1 cut(s)	1957
MhlI	GDGCHC	2 cut(s)	1124, 1672
MlsI	TGGCCA	1 cut(s)	1208
MluCI	AATT	9 cut(s)	71, 221, 575, 655, 678, 780, 1315, 1695, 2039
MluNI	TGGCCA	1 cut(s)	1208
MlyI	GAGTC	4 cut(s)	194, 575, 1169, 2042
MmeI	TCCRAC	4 cut(s)	109, 195, 1137, 1645
Mox20I	TGGCCA	1 cut(s)	1208
MroI	TCCGGA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	1208
MseI	TTAA	2 cut(s)	696, 876
Msp20I	TGGCCA	1 cut(s)	1208
Mva1269I	GAATGC	1 cut(s)	1516
MvaI	CCWGG	5 cut(s)	242, 266, 1719, 1798, 1860
NciI	CCSGG	6 cut(s)	107, 161, 342, 367, 811, 1178
NcoI	CCATGG	1 cut(s)	1497
NdeII	GATC	2 cut(s)	1399, 1957
NheI	GCTAGC	1 cut(s)	1264
NlaIII	CATG	7 cut(s)	301, 922, 1145, 1246, 1501, 1965, 2017
NlaIV	GGNNCC	8 cut(s)	142, 165, 327, 346, 486, 687, 738, 1469
NmuCI	GTSAC	4 cut(s)	1345, 1486, 1868, 1921
NspI	RCATGY	1 cut(s)	2017
PaeI	GCATGC	1 cut(s)	2017
PceI	AGGCCT	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 387
PctI	GAATGC	1 cut(s)	1516
PfeI	GAWTC	3 cut(s)	551, 791, 1808
PflFI	GACNNNGTC	1 cut(s)	1060
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	991, 1642
PleI	GAGTC	4 cut(s)	194, 575, 1168, 2042
PpsI	GAGTC	4 cut(s)	194, 575, 1168, 2042
PpuMI	RGGWCCY	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	1988
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	5 cut(s)	240, 264, 1717, 1796, 1858
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	5 cut(s)	240, 264, 1717, 1796, 1858
PspN4I	GGNNCC	8 cut(s)	142, 165, 327, 346, 486, 687, 738, 1469
PspPI	GGNCC	4 cut(s)	109, 140, 163, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	1645
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	1957
PsyI	GACNNNGTC	1 cut(s)	1060
RsaI	GTAC	2 cut(s)	155, 1815
RsaNI	GTAC	2 cut(s)	154, 1814
SaqAI	TTAA	2 cut(s)	696, 876
SatI	GCNGC	2 cut(s)	990, 1641
Sau3AI	GATC	2 cut(s)	1399, 1957
Sau96I	GGNCC	4 cut(s)	109, 140, 163, 325
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	4 cut(s)	194, 575, 1169, 2042
SduI	GDGCHC	2 cut(s)	1124, 1672
SfaNI	GCATC	5 cut(s)	1001, 1171, 1203, 1699, 1777
SfcI	CTRYAG	2 cut(s)	894, 1641
SinI	GGWCC	2 cut(s)	163, 325
SphI	GCATGC	1 cut(s)	2017
Sse9I	AATT	9 cut(s)	71, 221, 575, 655, 678, 780, 1315, 1695, 2039
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	9 cut(s)	112, 126, 182, 250, 306, 329, 464, 887, 1304
SspMI	CTAG	5 cut(s)	669, 675, 903, 1265, 1275
StuI	AGGCCT	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	1497
TaaI	ACNGT	2 cut(s)	1126, 1846
TaiI	ACGT	3 cut(s)	321, 1064, 1140
TaqI	TCGA	6 cut(s)	321, 390, 579, 626, 794, 1013
TasI	AATT	9 cut(s)	71, 221, 575, 655, 678, 780, 1315, 1695, 2039
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	551, 791, 1808
Tru1I	TTAA	2 cut(s)	696, 876
Tru9I	TTAA	2 cut(s)	696, 876
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	4 cut(s)	1345, 1486, 1868, 1921
TseI	GCWGC	2 cut(s)	989, 1640
Tsp45I	GTSAC	4 cut(s)	1345, 1486, 1868, 1921
TspDTI	ATGAA	6 cut(s)	534, 1104, 1130, 1299, 1444, 1968
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	1 cut(s)	811
Tth111I	GACNNNGTC	1 cut(s)	1060
VpaK11BI	GGWCC	2 cut(s)	163, 325
XagI	CCTNNNNNAGG	1 cut(s)	1795
XapI	RAATTY	4 cut(s)	221, 575, 780, 1315
XceI	RCATGY	1 cut(s)	2017
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1585
XspI	CTAG	5 cut(s)	669, 675, 903, 1265, 1275
ZraI	GACGTC	2 cut(s)	319, 1062
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.