Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Reverse (-)

2822433 .. 2823234

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTTGTTTGGCTTATAAGGGGGCCATTCTTCTTGTTTGCATTGGGTTTTTAGCTCTCCAGCCGGAAAAGGTTTCCGGATTAAGAAGCATGGATTTGGCTCTGAGATGGGATAAAAGGCACTTCTCATTTCTTAACAGTTTGCATGTTGTTAAGGCGGTTGCTGTAGAGGACTTGCAAGCAAAGCTGAGCTTGGCGCCTGCACCTGCAATGACATTCGATCCAAGTCAATCAAACAAACGTACAGTTCGAAAAGGATCAGATCCCATTCACAACAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

94

Amino Acids

10.35

Weight (kDa)

9.66

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	3 cut(s)	215, 257, 265
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	244
AluBI	AGCT	3 cut(s)	56, 187, 192
AluI	AGCT	3 cut(s)	56, 187, 192
AlwI	GGATC	3 cut(s)	215, 257, 265
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	24
AsuII	TTCGAA	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	196
BccI	CCATC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	25, 198
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	95, 179
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	65, 78
BsnI	GGCC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	250
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	220, 257, 262
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	96, 180
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	25, 198
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	3 cut(s)	215, 257, 265
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	3 cut(s)	220, 257, 262
BssNI	GRCGYC	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	140, 247
BstACI	GRCGYC	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	180, 201
BstDEI	CTNAG	2 cut(s)	104, 188
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	3 cut(s)	223, 260, 265
BstMBI	GATC	3 cut(s)	220, 257, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	180, 201
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	2 cut(s)	91, 146
CviJI	RGCY	7 cut(s)	14, 26, 56, 64, 101, 187, 192
CviKI_1	RGCY	7 cut(s)	14, 26, 56, 64, 101, 187, 192
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	104, 188
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	3 cut(s)	222, 259, 264
DpnII	GATC	3 cut(s)	220, 257, 262
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	2 cut(s)	94, 149
FaiI	YATR	3 cut(s)	18, 92, 147
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	2 cut(s)	90, 145
GlaI	GCGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	65, 78
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	94, 149
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	65, 78
Hpy188I	TCNGA	2 cut(s)	105, 262
Hpy188III	TCNNGA	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	140, 247
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	42, 145, 178, 203, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	104, 188
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	94, 149
HspAI	GCGC	1 cut(s)	197
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	220, 257, 262
LpnPI	CCDG	5 cut(s)	74, 78, 91, 213, 219
MaeII	ACGT	1 cut(s)	241
MalI	GATC	3 cut(s)	222, 259, 264
MboI	GATC	3 cut(s)	220, 257, 262
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	262
Mly113I	GGCGCC	1 cut(s)	197
MnlI	CCTC	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	3 cut(s)	83, 135, 153
MspI	CCGG	2 cut(s)	65, 78
MwoI	GCNNNNNNNGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	3 cut(s)	220, 257, 262
NlaIII	CATG	2 cut(s)	94, 149
NlaIV	GGNNCC	2 cut(s)	25, 198
NspI	RCATGY	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	25, 198
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	83, 135, 153
Sau3AI	GATC	3 cut(s)	220, 257, 262
Sau96I	GGNCC	1 cut(s)	24
SetI	ASST	6 cut(s)	58, 75, 189, 194, 208, 244
SfcI	CTRYAG	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	250
SsiI	CCGC	1 cut(s)	158
SspDI	GGCGCC	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	140, 247
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	219, 250
Tru1I	TTAA	3 cut(s)	83, 135, 153
Tru9I	TTAA	3 cut(s)	83, 135, 153
XceI	RCATGY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.