Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8124254.1

Orthogroup ID

OG0006369

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 623

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8124254.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 623 bp

ctaaaaccccaattcgcctctctccgaccctccagcttccctctcccggcccgcccactcaaacccgcccacgcaatcggccccgacggcaagtactacccggacccctccgacgacgacccgcccgaagcccccgaagactccggccacggcgtctccaaattccagcaaatccagcgccaggcctcccgccaccagaagctccaggaggacgacttcaagaagcaccagaacaccatgctctccgccattgccgacgtcgaggacccgccggagaaccccggctccggaactacccccagctccggggacgatttgttcggcgacatcgacgaagctattgccttgaagcgcaaggagtttgtgaagcaagggcttttgaagccgaaccctaaggtggaggcggtggaggagctggagctggagccggacgaggtggtggacttggaggagattgatgaacttcaggggctggcgattgtgggtgaggattcggatgaggaagggactgagaaattcgactcaaaggttagtgatttggatgagaaagatggtgtttcggtttcgagttctttgtttgatatggattttgataattatggtaagactagggctagaattgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0010468 GO:0016043 GO:0019222 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0050789 GO:0060255 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mur_ligase Mur_ligase_C Mur_ligase_M

Protein Analysis

208

Amino Acids

22.89

Weight (kDa)

4.37

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63680 AT1G63680 AT1G63680
fragaria_vesca	FvH4_5g02610 FvH4_5g02610 FvH4_5g02610 FvH4_5g02610
malus_domestica	MD06G1085100.v1.1 MD14G1106100.v1.1 MD14G1106300.v1.1
prunus_persica	Prupe.5G101100_v2.0.a1
pyrus_communis	pycom06g08120
rosa_chinensis	RchiOBHm_Chr7g0197491
rosa_laevigata	RLG00000003936 RLG00000003970
rosa_multiflora	Rmu_co8124254.1_g000001 Rmu_co8184758.1_g000001 Rmu_sc0002167.1_g000003 Rmu_sc0013361.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258420
rosa_rugosa	Rorug07G0040000 Rorug07G0040100
rosa_samantha	Rh7AG165200 Rh7BG167300 Rh7CG173700 Rh7DG166600
rosa_wichuraiana	Rw7G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	7 cut(s)	52, 66, 122, 190, 246, 269, 404
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	161, 515
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	153, 258
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	6 cut(s)	46, 181, 287, 305, 306, 397
AgsI	TTSAA	3 cut(s)	220, 349, 382
AjnI	CCWGG	2 cut(s)	180, 204
AloI	GAACNNNNNNTCC	4 cut(s)	269, 301, 302, 334
AluBI	AGCT	6 cut(s)	36, 202, 303, 338, 415, 421
AluI	AGCT	6 cut(s)	36, 202, 303, 338, 415, 421
Alw26I	GTCTC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	472
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	4 cut(s)	48, 79, 145, 183
ApoI	RAATTY	2 cut(s)	161, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	2 cut(s)	180, 354
AspS9I	GGNCC	4 cut(s)	49, 80, 103, 265
AsuC2I	CCSGG	4 cut(s)	47, 101, 282, 307
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	2 cut(s)	103, 265
AxyI	CCTNAGG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	144
BccI	CCATC	1 cut(s)	545
BceAI	ACGGC	2 cut(s)	103, 166
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	2 cut(s)	182, 206
BcnI	CCSGG	4 cut(s)	47, 101, 282, 307
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	609, 615
BfoI	RGCGCY	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	87
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	6 cut(s)	47, 101, 182, 206, 282, 307
Bme18I	GGWCC	2 cut(s)	103, 265
BmgT120I	GGNCC	4 cut(s)	49, 80, 103, 265
BmiI	GGNNCC	5 cut(s)	82, 105, 267, 286, 426
BmrFI	CCNGG	6 cut(s)	47, 101, 182, 206, 282, 307
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	4 cut(s)	16, 188, 437, 443
BpuMI	CCSGG	4 cut(s)	47, 101, 282, 307
BsaHI	GRCGYC	2 cut(s)	153, 258
BsaJI	CCNNGG	3 cut(s)	148, 280, 306
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 269, 299
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 181, 287, 305, 306, 397
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	182, 206
BseDI	CCNNGG	3 cut(s)	148, 280, 306
BseGI	GGATG	2 cut(s)	502, 547
BseLI	CCNNNNNNNGG	6 cut(s)	46, 181, 287, 305, 306, 397
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	501
BseRI	GAGGAG	2 cut(s)	425, 464
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	4 cut(s)	50, 81, 147, 185
BsiSI	CCGG	8 cut(s)	47, 101, 144, 272, 282, 288, 306, 428
BslFI	GGGAC	2 cut(s)	323, 520
BslI	CCNNNNNNNGG	6 cut(s)	46, 181, 287, 305, 306, 397
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	323, 520
BsnI	GGCC	4 cut(s)	50, 81, 147, 185
Bsp13I	TCCGGA	1 cut(s)	287
BspACI	CCGC	7 cut(s)	52, 66, 122, 190, 246, 269, 404
BspANI	GGCC	4 cut(s)	50, 81, 147, 185
BspCNI	CTCAG	1 cut(s)	502
BspEI	TCCGGA	1 cut(s)	287
BspLI	GGNNCC	5 cut(s)	82, 105, 267, 286, 426
BsrDI	GCAATG	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	148, 280, 306
BssNI	GRCGYC	2 cut(s)	153, 258
Bst2UI	CCWGG	2 cut(s)	182, 206
BstACI	GRCGYC	2 cut(s)	153, 258
BstC8I	GCNNGC	2 cut(s)	52, 474
BstDEI	CTNAG	2 cut(s)	393, 510
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	502, 547
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	180, 354
BstMAI	GTCTC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 175, 382
BstNI	CCWGG	2 cut(s)	182, 206
BstSCI	CCNGG	6 cut(s)	45, 99, 180, 204, 280, 305
BstV2I	GAAGAC	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	50, 81, 147, 185
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	502, 547
Cac8I	GCNNGC	2 cut(s)	52, 474
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	2 cut(s)	180, 354
Cfr13I	GGNCC	4 cut(s)	49, 80, 103, 265
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	238
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	393, 510
EaeI	YGGCCR	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	103, 265
Eco57I	CTGAAG	1 cut(s)	449
Eco81I	CCTNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	180, 204
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	1 cut(s)	241
FaiI	YATR	3 cut(s)	239, 584, 600
FaqI	GGGAC	2 cut(s)	323, 520
FatI	CATG	1 cut(s)	237
FauI	CCCGC	5 cut(s)	59, 73, 129, 197, 276
FokI	GGATG	2 cut(s)	509, 554
FspBI	CTAG	2 cut(s)	609, 615
GlaI	GCGC	2 cut(s)	179, 353
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	4 cut(s)	16, 188, 437, 443
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	4 cut(s)	50, 81, 147, 185
HapII	CCGG	8 cut(s)	47, 101, 144, 272, 282, 288, 306, 428
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	180, 354
Hin1I	GRCGYC	2 cut(s)	153, 258
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	2 cut(s)	178, 352
HinP1I	GCGC	2 cut(s)	178, 352
HinfI	GANTC	3 cut(s)	140, 491, 521
HpaII	CCGG	8 cut(s)	47, 101, 144, 272, 282, 288, 306, 428
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	26, 112, 496
Hpy188III	TCNNGA	2 cut(s)	220, 288
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	6 cut(s)	89, 116, 119, 260, 263, 335
HpyAV	CCTTC	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 175, 382
HpyF3I	CTNAG	2 cut(s)	393, 510
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	2 cut(s)	153, 258
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	2 cut(s)	178, 352
Kpn2I	TCCGGA	1 cut(s)	287
LmnI	GCTCC	6 cut(s)	207, 290, 308, 412, 418, 424
MaeI	CTAG	2 cut(s)	609, 615
MaeII	ACGT	1 cut(s)	258
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	5 cut(s)	11, 161, 515, 595, 618
MlyI	GAGTC	2 cut(s)	134, 515
MmeI	TCCRAC	2 cut(s)	49, 135
MroI	TCCGGA	1 cut(s)	287
MspI	CCGG	8 cut(s)	47, 101, 144, 272, 282, 288, 306, 428
MspR9I	CCNGG	6 cut(s)	47, 101, 182, 206, 282, 307
MvaI	CCWGG	2 cut(s)	182, 206
MwoI	GCNNNNNNNGC	3 cut(s)	87, 175, 382
NciI	CCSGG	4 cut(s)	47, 101, 282, 307
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	5 cut(s)	82, 105, 267, 286, 426
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 327
PfeI	GAWTC	1 cut(s)	491
PfoI	TCCNGGA	1 cut(s)	204
PleI	GAGTC	2 cut(s)	134, 515
PpsI	GAGTC	2 cut(s)	134, 515
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	180, 204
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	180, 204
PspN4I	GGNNCC	5 cut(s)	82, 105, 267, 286, 426
PspPI	GGNCC	4 cut(s)	49, 80, 103, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
Sau96I	GGNCC	4 cut(s)	49, 80, 103, 265
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	134, 515
ScrFI	CCNGG	6 cut(s)	47, 101, 182, 206, 282, 307
SinI	GGWCC	2 cut(s)	103, 265
Sse9I	AATT	5 cut(s)	11, 161, 515, 595, 618
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	7 cut(s)	52, 66, 122, 190, 246, 269, 404
SspMI	CTAG	2 cut(s)	609, 615
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	6 cut(s)	45, 99, 180, 204, 280, 305
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	261, 330, 519, 566
TasI	AATT	5 cut(s)	11, 161, 515, 595, 618
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	103, 265
XapI	RAATTY	2 cut(s)	161, 515
XspI	CTAG	2 cut(s)	609, 615
ZraI	GACGTC	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.