Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

23789062 .. 23791229

Gene Structure 2168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGAAGAGCACAAGCACGAGGAATCGATCATGGAGAAGATCTCTGAGAAGATCCATGGTCACGATGACTCTTCTTCTTCTTCTTCCGATTCGGATGACGATAAGAACTCTGCGTCTCTCAAAACCAAGATTTATCGTCTTTTCGGAAGAGAACAGCCTCTTCACAAGCTTTTCGGTGGCGGAAAACCTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAACTGTTTCCTGGATCTTATTCGAGTTACTTGAGTACAATCTTCTCACACTCTTCGGCCACATTTCAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTCACAAGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTGCTTCTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAGGAAGAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAAAGTTGGTAGCTCCTGCAACTTCTTGACCTTAATCTACATCGCAACTGTACTTCTCTTCACGATTCCCGTGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAGGGAGATCAAGAAGCAATACGTGGAGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCAAAATTCCTAAAGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0080167 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

255

Amino Acids

28.7

Weight (kDa)

8.44

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	65 - 219	8.5e-58	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AciI	CCGC	2 cut(s)	5, 183
AclWI	GGATC	2 cut(s)	49, 269
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	2 cut(s)	404, 411
AfaI	GTAC	3 cut(s)	284, 358, 591
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	315, 446
AjiI	CACGTC	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	3 cut(s)	172, 424, 552
AluI	AGCT	3 cut(s)	172, 424, 552
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	49, 269
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	726
AsuHPI	GGTGA	4 cut(s)	366, 526, 662, 727
AvaI	CYCGRG	1 cut(s)	404
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	348, 354
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	199
BglII	AGATCT	2 cut(s)	42, 493
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	58, 405
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	58, 405
BseGI	GGATG	3 cut(s)	103, 399, 415
BseJI	GATNNNNATC	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	306
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	2 cut(s)	5, 183
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	49, 269
BspQI	GCTCTTC	1 cut(s)	3
BspTI	CTTAAG	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	58, 405
BssMI	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	253, 466, 589
Bst6I	CTCTTC	8 cut(s)	3, 79, 145, 168, 305, 384, 484, 602
BstAFI	CTTAAG	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	48, 470
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	103, 399, 415
BstKTI	GATC	6 cut(s)	33, 45, 57, 264, 496, 672
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	4 cut(s)	42, 54, 261, 493
BstYI	RGATCY	4 cut(s)	42, 54, 261, 493
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	2 cut(s)	565, 674
BtrI	CACGTC	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	103, 399, 415
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	29
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	283, 357, 590
CviAII	CATG	2 cut(s)	34, 59
CviJI	RGCY	6 cut(s)	160, 172, 306, 424, 552, 740
CviKI_1	RGCY	6 cut(s)	160, 172, 306, 424, 552, 740
CviQI	GTAC	3 cut(s)	283, 357, 590
DdeI	CTNAG	2 cut(s)	48, 470
DpnI	GATC	6 cut(s)	32, 44, 56, 263, 495, 671
DpnII	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	8 cut(s)	3, 79, 145, 168, 305, 384, 484, 602
EarI	CTCTTC	8 cut(s)	3, 79, 145, 168, 305, 384, 484, 602
EciI	GGCGGA	2 cut(s)	20, 198
Eco130I	CCWWGG	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	404, 411
Eco88I	CYCGRG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	37, 62
FaiI	YATR	5 cut(s)	35, 60, 384, 529, 627
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	33, 58
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	3 cut(s)	110, 386, 422
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	348, 354
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	306
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	37, 62
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	26, 71, 92, 604
HphI	GGTGA	4 cut(s)	366, 526, 662, 727
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	49, 91, 97, 149
Hpy188III	TCNNGA	8 cut(s)	65, 228, 432, 486, 565, 601, 673, 754
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	698
HpyAV	CCTTC	3 cut(s)	214, 370, 694
HpyCH4III	ACNGT	3 cut(s)	253, 466, 589
HpyCH4IV	ACGT	2 cut(s)	684, 696
HpyCH4V	TGCA	3 cut(s)	248, 482, 558
HpyF3I	CTNAG	2 cut(s)	48, 470
HpySE526I	ACGT	2 cut(s)	684, 696
Hsp92II	CATG	2 cut(s)	37, 62
Kzo9I	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	557, 737
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	2 cut(s)	348, 354
MaeII	ACGT	2 cut(s)	684, 696
MaeIII	GTNAC	3 cut(s)	62, 273, 372
MalI	GATC	6 cut(s)	32, 44, 56, 263, 495, 671
MboI	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
MflI	RGATCY	4 cut(s)	42, 54, 261, 493
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	315, 726
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	16, 171, 204, 224, 387, 400, 657
MseI	TTAA	3 cut(s)	437, 498, 572
MspCI	CTTAAG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
NlaIII	CATG	2 cut(s)	37, 62
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	62, 372
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	26, 92, 604
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	739
PsuI	RGATCY	4 cut(s)	42, 54, 261, 493
RsaI	GTAC	3 cut(s)	284, 358, 591
RsaNI	GTAC	3 cut(s)	283, 357, 590
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	3 cut(s)	437, 498, 572
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	6 cut(s)	30, 42, 54, 261, 493, 669
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	278, 497
SmoI	CTYRAG	2 cut(s)	278, 497
Sse9I	AATT	2 cut(s)	315, 726
SsiI	CCGC	2 cut(s)	5, 183
SspMI	CTAG	2 cut(s)	348, 354
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	253, 466, 589
TaiI	ACGT	2 cut(s)	687, 699
TaqI	TCGA	3 cut(s)	29, 270, 693
TasI	AATT	2 cut(s)	315, 726
TatI	WGTACW	2 cut(s)	282, 589
TfiI	GAWTC	3 cut(s)	26, 92, 604
Tru1I	TTAA	3 cut(s)	437, 498, 572
Tru9I	TTAA	3 cut(s)	437, 498, 572
TseFI	GTSAC	2 cut(s)	62, 372
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	2 cut(s)	62, 372
TspDTI	ATGAA	3 cut(s)	352, 371, 642
Vha464I	CTTAAG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	726
XspI	CTAG	2 cut(s)	348, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.