Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Reverse (-)

6837911 .. 6840036

Gene Structure 2126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGCAGTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAAAGGTGATTCGTCGTCTTCATCATCATCAGATGACGAAAACGAGAAGAAGTCTTCGTCATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAGAGACCTGTTCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAAGAAAATGTCAGGAGGTGTATTTGGCGGTGCTACAGTGGCATGGGTGCTATTTGAATTGATGGAGTATCATCTTCTTACTCTGTTATGTCACGTTATGATCGTTGCTCTTGCTGTGTTGTTTCTATGGTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGTTCATATCCCTGAAGAACCTCTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGATCTCTTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTCTCTGCTATTGCCGGATTGTGGGTTCTATCGATCTTGGGCGGCTGCTATAGTTTCTTGACATTGGCATACATAGCTCTGGTTCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAAGACAAAGTAGACTCATACGGTGAGAAAGCAATGGCTGAGTTGAAGAAGCAATACGCTGTGTTGGACGCAAAGGTATTCAGCAAAATCCCAAGAGGACCGTTGAAAGACAAGAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0080167 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

271

Amino Acids

30.28

Weight (kDa)

8.61

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	86 - 240	1.1e-58	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	5 cut(s)	5, 243, 246, 306, 612
AclWI	GGATC	4 cut(s)	38, 51, 94, 530
AcuI	CTGAAG	3 cut(s)	467, 474, 489
AfaI	GTAC	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	4 cut(s)	187, 335, 736, 796
AleI	CACNNNNGTG	1 cut(s)	111
AloI	GAACNNNNNNTCC	2 cut(s)	579, 611
AluBI	AGCT	2 cut(s)	487, 647
AluI	AGCT	2 cut(s)	487, 647
Alw26I	GTCTC	3 cut(s)	177, 214, 441
AlwI	GGATC	4 cut(s)	38, 51, 94, 530
ApeKI	GCWGC	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	3 cut(s)	24, 125, 725
AvaII	GGWCC	1 cut(s)	788
BamHI	GGATCC	1 cut(s)	43
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
BbsI	GAAGAC	3 cut(s)	117, 153, 699
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	3 cut(s)	73, 111, 334
BcoDI	GTCTC	3 cut(s)	177, 214, 441
BfmI	CTRYAG	2 cut(s)	312, 619
BisI	GCNGC	3 cut(s)	244, 613, 616
BlsI	GCNGC	3 cut(s)	245, 614, 617
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	45
BpiI	GAAGAC	3 cut(s)	117, 153, 699
Bsa29I	ATCGAT	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	729
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	1 cut(s)	720
BseXI	GCAGC	1 cut(s)	602
BshVI	ATCGAT	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	254, 585
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	3 cut(s)	177, 214, 441
BsmBI	CGTCTC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	214
Bsp143I	GATC	5 cut(s)	43, 99, 378, 522, 603
BspACI	CCGC	5 cut(s)	5, 243, 246, 306, 612
BspCNI	CTCAG	1 cut(s)	721
BspDI	ATCGAT	1 cut(s)	602
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	4 cut(s)	38, 51, 94, 530
BspQI	GCTCTTC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	5 cut(s)	43, 99, 378, 522, 603
Bst4CI	ACNGT	5 cut(s)	316, 518, 667, 713, 792
Bst6I	CTCTTC	5 cut(s)	208, 483, 532, 537, 665
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	500, 729
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	5 cut(s)	46, 102, 381, 525, 606
BstMAI	GTCTC	3 cut(s)	177, 214, 441
BstMBI	GATC	5 cut(s)	43, 99, 378, 522, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 644
BstSFI	CTRYAG	2 cut(s)	312, 619
BstV1I	GCAGC	1 cut(s)	602
BstV2I	GAAGAC	3 cut(s)	117, 153, 699
BstX2I	RGATCY	3 cut(s)	43, 99, 522
BstYI	RGATCY	3 cut(s)	43, 99, 522
Bsu15I	ATCGAT	1 cut(s)	602
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	3 cut(s)	57, 321, 663
Cac8I	GCNNGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	602
CseI	GACGC	2 cut(s)	534, 767
Csp6I	GTAC	1 cut(s)	688
CviAII	CATG	2 cut(s)	20, 321
CviJI	RGCY	4 cut(s)	487, 615, 647, 728
CviKI_1	RGCY	4 cut(s)	487, 615, 647, 728
CviQI	GTAC	1 cut(s)	688
DdeI	CTNAG	2 cut(s)	500, 729
DpnI	GATC	5 cut(s)	45, 101, 380, 524, 605
DpnII	GATC	5 cut(s)	43, 99, 378, 522, 603
Eam1104I	CTCTTC	5 cut(s)	208, 483, 532, 537, 665
EarI	CTCTTC	5 cut(s)	208, 483, 532, 537, 665
EciI	GGCGGA	2 cut(s)	20, 261
Eco31I	GGTCTC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	3 cut(s)	467, 474, 489
EcoRV	GATATC	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	2 cut(s)	23, 324
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	2 cut(s)	19, 320
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	244, 613, 616
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	244, 613, 616
GluI	GCNGC	3 cut(s)	244, 613, 616
HapII	CCGG	2 cut(s)	254, 585
HgaI	GACGC	2 cut(s)	534, 767
Hin1II	CATG	2 cut(s)	23, 324
HinfI	GANTC	6 cut(s)	26, 71, 116, 448, 504, 704
HpaII	CCGG	2 cut(s)	254, 585
HphI	GGTGA	3 cut(s)	24, 125, 725
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	94, 139, 212
Hpy188III	TCNNGA	5 cut(s)	291, 452, 536, 562, 628
Hpy8I	GTNNAC	1 cut(s)	703
Hpy99I	CGWCG	2 cut(s)	124, 550
HpyAV	CCTTC	3 cut(s)	187, 268, 802
HpyCH4III	ACNGT	5 cut(s)	316, 518, 667, 713, 792
HpyCH4IV	ACGT	1 cut(s)	372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 644
HpyF3I	CTNAG	2 cut(s)	500, 729
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	23, 324
Kzo9I	GATC	5 cut(s)	43, 99, 378, 522, 603
LguI	GCTCTTC	1 cut(s)	665
LpnPI	CCDG	8 cut(s)	60, 237, 267, 276, 465, 480, 598, 635
Lsp1109I	GCAGC	1 cut(s)	602
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	5 cut(s)	45, 101, 380, 524, 605
MboI	GATC	5 cut(s)	43, 99, 378, 522, 603
MflI	RGATCY	3 cut(s)	43, 99, 522
MluCI	AATT	2 cut(s)	37, 335
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	8 cut(s)	49, 60, 287, 486, 546, 581, 681, 779
MroXI	GAANNNNTTC	1 cut(s)	477
MslI	CAYNNNNRTG	2 cut(s)	18, 111
MspI	CCGG	2 cut(s)	254, 585
MwoI	GCNNNNNNNGC	2 cut(s)	317, 644
NdeII	GATC	5 cut(s)	43, 99, 378, 522, 603
NlaIII	CATG	2 cut(s)	23, 324
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	368
OliI	CACNNNNGTG	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 687
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	5 cut(s)	26, 71, 116, 448, 504
PkrI	GCNGC	3 cut(s)	245, 614, 617
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	788
PsuI	RGATCY	3 cut(s)	43, 99, 522
RsaI	GTAC	1 cut(s)	689
RsaNI	GTAC	1 cut(s)	688
RseI	CAYNNNNRTG	2 cut(s)	18, 111
SapI	GCTCTTC	1 cut(s)	665
SatI	GCNGC	3 cut(s)	244, 613, 616
Sau3AI	GATC	5 cut(s)	43, 99, 378, 522, 603
Sau96I	GGNCC	1 cut(s)	788
SchI	GAGTC	1 cut(s)	698
SfcI	CTRYAG	2 cut(s)	312, 619
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	18, 111
Sse9I	AATT	2 cut(s)	37, 335
SsiI	CCGC	5 cut(s)	5, 243, 246, 306, 612
TaaI	ACNGT	5 cut(s)	316, 518, 667, 713, 792
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	191, 507, 602
TasI	AATT	2 cut(s)	37, 335
TauI	GCSGC	2 cut(s)	246, 615
TfiI	GAWTC	5 cut(s)	26, 71, 116, 448, 504
TscAI	CASTG	3 cut(s)	57, 321, 670
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	615
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	6 cut(s)	24, 36, 117, 218, 415, 449
TspRI	CASTG	3 cut(s)	57, 321, 670
VpaK11BI	GGWCC	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.