Rh1BG392500

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007019
Physical Location & Seq
Forward (+)
51836626 .. 51838961
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG392500.1

Sequence Viewer

Length: 621 bp
ATGCCCAAAAAGAGGAACTTTGAAAGGAAATGCTTTCAATTATGGTCTTTTATTACAGCTGCTGATGTCCTCCTATGGAGGGACAAGAAAGTATCTGGAAGTGTTCTTGGTGGAGCCACTGTACTATGGATTTTCTTTGAGTTGCTTGAATACCATTTGATAACTCTGGTCTGCCATATGTTGATACTTTCTCTGGGCGTTTTCTTCCTGTGGTCCAATGTGTCCTCCTTTATCAACAAGGCTCCACCAGAAATCCCAAAAGTTCAAATTCCGGAGAAGTGTGTCCTTGATCTTGCCTCTGCACTGAGGATTGAACTCAACAAAGGGTTCCATGTTCTGCGGGAAATTGCATCTGGGAGAGATTTGAGGACATTCCTCATTGTTATAGTTGTCTTGTGGATTGTGTCAGTGATTGGCAAATGGTTCAACTTCCTGACCTTATTCTACTTATCCTTTGTCTTGCTGCACACGGTGCCAGTGATCTATGAGAAACATGATGTCCAGATTGATGCTTTTGCTGAGAAGGCATGGATTGAGATTAAGAAGCAGTATGCAGTGTTTGATGCGAATGTTTTGAGTAAGATACCCAAGGGTCCAGTGAAAGAGAAGAAGAAGGACTAG

Protein Analysis

206

Amino Acids

23.79

Weight (kDa)

9.4

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 21 - 176 1.2e-57 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 12, 79
AgsI TTSAA 6 cut(s) 23, 38, 149, 266, 314, 427
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 59, 463
ApoI RAATTY 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 213, 593
AvaII GGWCC 2 cut(s) 213, 593
BanI GGYRCC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 46, 450
BfaI CTAG 1 cut(s) 619
BisI GCNGC 2 cut(s) 60, 464
BlsI GCNGC 2 cut(s) 61, 465
Bme18I GGWCC 2 cut(s) 213, 593
BmgT120I GGNCC 2 cut(s) 213, 593
BmiI GGNNCC 5 cut(s) 115, 243, 329, 474, 594
BmsI GCATC 3 cut(s) 359, 499, 553
BsaJI CCNNGG 1 cut(s) 588
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 79
Bse1I ACTGG 2 cut(s) 476, 596
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 12, 79
BseMII CTCAG 2 cut(s) 296, 510
BseNI ACTGG 2 cut(s) 476, 596
BseXI GCAGC 2 cut(s) 46, 450
BsgI GTGCAG 2 cut(s) 285, 449
BshNI GGYRCC 1 cut(s) 472
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 12, 79
BsmFI GGGAC 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 2 cut(s) 289, 480
BspACI CCGC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 297, 511
BspEI TCCGGA 1 cut(s) 271
BspLI GGNNCC 5 cut(s) 115, 243, 329, 474, 594
BspT107I GGYRCC 1 cut(s) 472
BsrI ACTGG 2 cut(s) 476, 596
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 2 cut(s) 289, 480
BssT1I CCWWGG 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 121, 472
BstAPI GCANNNNNTGC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 305, 519
BstKTI GATC 2 cut(s) 292, 483
BstMBI GATC 2 cut(s) 289, 480
BstMWI GCNNNNNNNGC 2 cut(s) 472, 524
BstV1I GCAGC 2 cut(s) 46, 450
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 6 cut(s) 117, 302, 414, 483, 561, 603
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 213, 593
Csp6I GTAC 1 cut(s) 122
CviAII CATG 3 cut(s) 332, 494, 528
CviJI RGCY 3 cut(s) 59, 116, 242
CviKI_1 RGCY 3 cut(s) 59, 116, 242
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 305, 519
DpnI GATC 2 cut(s) 291, 482
DpnII GATC 2 cut(s) 289, 480
DraIII CACNNNGTG 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 213, 593
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 3 cut(s) 335, 497, 531
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 95
FatI CATG 3 cut(s) 331, 493, 527
FauI CCCGC 1 cut(s) 333
FauNDI CATATG 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 60, 464
Fsp4HI GCNGC 2 cut(s) 60, 464
FspBI CTAG 1 cut(s) 619
GluI GCNGC 2 cut(s) 60, 464
HapII CCGG 1 cut(s) 272
Hin1II CATG 3 cut(s) 335, 497, 531
HpaII CCGG 1 cut(s) 272
Hpy188III TCNNGA 4 cut(s) 96, 272, 433, 502
HpyAV CCTTC 2 cut(s) 517, 607
HpyCH4III ACNGT 2 cut(s) 121, 472
HpyCH4V TGCA 4 cut(s) 302, 350, 466, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 524
HpyF3I CTNAG 2 cut(s) 305, 519
Hsp92II CATG 3 cut(s) 335, 497, 531
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 289, 480
LmnI GCTCC 2 cut(s) 113, 247
Lsp1109I GCAGC 2 cut(s) 46, 450
LweI GCATC 3 cut(s) 359, 499, 553
MaeI CTAG 1 cut(s) 619
MalI GATC 2 cut(s) 291, 482
MboI GATC 2 cut(s) 289, 480
MboII GAAGA 2 cut(s) 196, 619
MluCI AATT 3 cut(s) 38, 267, 345
MnlI CCTC 8 cut(s) 6, 72, 80, 235, 300, 307, 360, 386
MroI TCCGGA 1 cut(s) 271
MseI TTAA 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 472, 524
NdeI CATATG 1 cut(s) 177
NdeII GATC 2 cut(s) 289, 480
NlaIII CATG 3 cut(s) 335, 497, 531
NlaIV GGNNCC 5 cut(s) 115, 243, 329, 474, 594
PkrI GCNGC 2 cut(s) 61, 465
PspN4I GGNNCC 5 cut(s) 115, 243, 329, 474, 594
PspPI GGNCC 2 cut(s) 213, 593
PstNI CAGNNNCTG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 2 cut(s) 60, 464
Sau3AI GATC 2 cut(s) 289, 480
Sau96I GGNCC 2 cut(s) 213, 593
SetI ASST 2 cut(s) 61, 440
SfaNI GCATC 3 cut(s) 359, 499, 553
SinI GGWCC 2 cut(s) 213, 593
Sse9I AATT 3 cut(s) 38, 267, 345
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 619
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 121, 472
TasI AATT 3 cut(s) 38, 267, 345
TatI WGTACW 1 cut(s) 121
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 6 cut(s) 124, 309, 414, 483, 561, 603
TseI GCWGC 2 cut(s) 59, 463
TspRI CASTG 6 cut(s) 124, 309, 414, 483, 561, 603
VpaK11BI GGWCC 2 cut(s) 213, 593
XapI RAATTY 1 cut(s) 267
XspI CTAG 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.