Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Reverse (-)

2774713 .. 2776616

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGGAGCCAGAAGAGATACCAGGGGCGTCGCTCATGGAGAAGATCTACTCCCACCACCGCTCCTCGTCGTCTTCTTCGTCTTCCGACGACGACAAGCCGTCCAAGAAGGCCGATGCCGTCAAGAAGGCCGATGACGTCAAGCACAAGGCTGAGGAACACGACATGCCGTCCGCTCACGATTCCGTCAAGTCCAACAAATTCAGGATCTTCGGCAGGGAAAAGCCCGTTCATAAGGTCCTCGGCGGTGGCAAACCTGCTGATGTCCTCCTATGGAGGGACAAGAAAGTATCTGGAAGTGTTCTTGGTGGAGCCACTGTGCTATGGATTTTCTTTGAGTTGCTTGAATACCATTTGATAACTCTGGTCTGCCATATGTTGATACTTTCTCTGGGCGTTTTCTTCCTGTGGTCCAATGTATCCTCCTTTATCAACAAGGCTCCACCAGAAATCCCAAAAGTTCAAATTCCGGAGAAGTGTGTCCTTGATCTTGCCTCGGCACTGAGGATTGAACTCAACAAAGGGTTCTATGTTCTGCGGGAAATTGCATCTGGGAGAGATTTGAGGACATTCCTCATTGTTATAGTTGTCTTGTGGATTGTGTCAGTGATTGGCAAATGGTTCAACTTCCTGACCTTATTCTACTTATCCTTTGTCTTGCTGCACACGGTGCCAGTGATCTATGAGAAACATGATGTCCATATTGATGCTTTTGCTGAGAAGGCATGGATTGAGATTAAGAAGCAGTATGCAGTGTTTGATGCGAATGTTTTGAGTAAGATACCCAAGGGTCCAGTGAAAGAGAAGAAGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

273

Amino Acids

30.71

Weight (kDa)

8.97

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	87 - 242	1.3e-56	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	670
AccBSI	CCGCTC	2 cut(s)	63, 176
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	5 cut(s)	5, 61, 174, 246, 538
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	200, 465
AcyI	GRCGYC	2 cut(s)	29, 138
AdeI	CACNNNGTG	1 cut(s)	670
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	347, 464, 512, 625
AhdI	GACNNNNNGTC	2 cut(s)	100, 169
AjnI	CCWGG	1 cut(s)	22
AlwI	GGATC	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	2 cut(s)	111, 129
ApeKI	GCWGC	1 cut(s)	661
ApoI	RAATTY	2 cut(s)	200, 465
AspS9I	GGNCC	3 cut(s)	238, 411, 791
AvaII	GGWCC	3 cut(s)	238, 411, 791
BanI	GGYRCC	1 cut(s)	670
BbsI	GAAGAC	2 cut(s)	66, 75
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	648
BceAI	ACGGC	3 cut(s)	85, 104, 154
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	817
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	662
BlsI	GCNGC	1 cut(s)	663
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	3 cut(s)	238, 411, 791
BmeRI	GACNNNNNGTC	2 cut(s)	100, 169
BmgT120I	GGNCC	3 cut(s)	238, 411, 791
BmiI	GGNNCC	5 cut(s)	9, 313, 441, 672, 792
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	106, 557, 697, 751
BpiI	GAAGAC	2 cut(s)	66, 75
Bpu10I	CCTNAGC	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	29, 138
BsaJI	CCNNGG	4 cut(s)	23, 241, 495, 786
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	674, 794
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	23, 241, 495, 786
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	144, 494, 708
BseNI	ACTGG	2 cut(s)	674, 794
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	648
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	113, 131
BshNI	GGYRCC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	113, 131
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	45, 207, 487, 678
BspACI	CCGC	5 cut(s)	5, 61, 174, 246, 538
BspANI	GGCC	2 cut(s)	113, 131
BspCNI	CTCAG	3 cut(s)	145, 495, 709
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	5 cut(s)	9, 313, 441, 672, 792
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	670
BsrBI	CCGCTC	2 cut(s)	63, 176
BsrI	ACTGG	2 cut(s)	674, 794
BssECI	CCNNGG	4 cut(s)	23, 241, 495, 786
BssMI	GATC	4 cut(s)	45, 207, 487, 678
BssNI	GRCGYC	2 cut(s)	29, 138
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	319, 670
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	29, 138
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	153, 503, 717
BstKTI	GATC	4 cut(s)	48, 210, 490, 681
BstMBI	GATC	4 cut(s)	45, 207, 487, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	670, 722
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	648
BstV2I	GAAGAC	2 cut(s)	66, 75
BstX2I	RGATCY	2 cut(s)	45, 207
BstYI	RGATCY	2 cut(s)	45, 207
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	113, 131
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	6 cut(s)	315, 500, 612, 681, 759, 801
BveI	ACCTGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	238, 411, 791
CseI	GACGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	37, 166, 692, 726
CviJI	RGCY	8 cut(s)	10, 100, 113, 131, 152, 226, 314, 440
CviKI_1	RGCY	8 cut(s)	10, 100, 113, 131, 152, 226, 314, 440
DdeI	CTNAG	3 cut(s)	153, 503, 717
DpnI	GATC	4 cut(s)	47, 209, 489, 680
DpnII	GATC	4 cut(s)	45, 207, 487, 678
DraIII	CACNNNGTG	1 cut(s)	670
DriI	GACNNNNNGTC	2 cut(s)	100, 169
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	2 cut(s)	100, 169
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	786
Eco47I	GGWCC	3 cut(s)	238, 411, 791
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	40, 169, 695, 729
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	36, 165, 691, 725
FauI	CCCGC	1 cut(s)	531
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	662
Fsp4HI	GCNGC	1 cut(s)	662
FspBI	CTAG	1 cut(s)	817
GluI	GCNGC	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	113, 131
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	2 cut(s)	29, 138
Hin1II	CATG	4 cut(s)	40, 169, 695, 729
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	470
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	6 cut(s)	124, 179, 205, 294, 470, 631
Hpy99I	CGWCG	4 cut(s)	34, 73, 92, 95
HpyAV	CCTTC	4 cut(s)	103, 121, 715, 805
HpyCH4III	ACNGT	2 cut(s)	319, 670
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	548, 664, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	670, 722
HpyF3I	CTNAG	3 cut(s)	153, 503, 717
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	29, 138
Hsp92II	CATG	4 cut(s)	40, 169, 695, 729
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	45, 207, 487, 678
LmnI	GCTCC	4 cut(s)	7, 68, 311, 445
Lsp1109I	GCAGC	1 cut(s)	648
LweI	GCATC	4 cut(s)	106, 557, 697, 751
MaeI	CTAG	1 cut(s)	817
MaeII	ACGT	1 cut(s)	138
MalI	GATC	4 cut(s)	47, 209, 489, 680
MbiI	CCGCTC	2 cut(s)	63, 176
MboI	GATC	4 cut(s)	45, 207, 487, 678
MboII	GAAGA	8 cut(s)	26, 55, 66, 69, 75, 202, 394, 817
MflI	RGATCY	2 cut(s)	45, 207
MluCI	AATT	3 cut(s)	200, 465, 543
MmeI	TCCRAC	2 cut(s)	111, 219
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	670, 722
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	4 cut(s)	45, 207, 487, 678
NlaIII	CATG	4 cut(s)	40, 169, 695, 729
NlaIV	GGNNCC	5 cut(s)	9, 313, 441, 672, 792
NmeAIII	GCCGAG	2 cut(s)	222, 476
NspI	RCATGY	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	663
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	9, 313, 441, 672, 792
PspPI	GGNCC	3 cut(s)	238, 411, 791
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	45, 207
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	1 cut(s)	662
Sau3AI	GATC	4 cut(s)	45, 207, 487, 678
Sau96I	GGNCC	3 cut(s)	238, 411, 791
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	4 cut(s)	141, 240, 259, 638
SfaNI	GCATC	4 cut(s)	106, 557, 697, 751
SinI	GGWCC	3 cut(s)	238, 411, 791
SmiMI	CAYNNNNRTG	1 cut(s)	705
Sse9I	AATT	3 cut(s)	200, 465, 543
SsiI	CCGC	5 cut(s)	5, 61, 174, 246, 538
SspMI	CTAG	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	319, 670
TaiI	ACGT	1 cut(s)	141
TasI	AATT	3 cut(s)	200, 465, 543
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	6 cut(s)	322, 507, 612, 681, 759, 801
TseI	GCWGC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	6 cut(s)	322, 507, 612, 681, 759, 801
VpaK11BI	GGWCC	3 cut(s)	238, 411, 791
XapI	RAATTY	2 cut(s)	200, 465
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	817
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.