Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031430.1

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

1452 .. 3354

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031430.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggcagagccagaagagataccaggggcgtcgctcatggagaagatctactctcaccaccgctcctcgtcgtcttcgtcgtcttccgacgacgacaagccgtccaagaaggccgatgccgtcaagcccgatgacgtcaagcacaaggctgaggaacacgacatgccgtccgctcacgattccgtcaagtccaacaaattcaggatcttcggccgggaaaagcccgttcataaggtcctcggcggtggcaaacctgctgatgtcctcctatggagggacaagaaagtatctggaagtgttcttggtggagccactgtactatggattttctttgagttgcttgaataccatttgataactctggtctgccatatgttgatactttctctgggcgttttcttcctgtggtccaatgtgtcctcctttatcaacaaggctccaccagaaatcccaaaagttcaaattccggagaagtgtgtccttgatcttgcctctgcactgaggattgaactcaacaaagggttccatgttctgcgggaaattgcatctgggagagatttgaggacattcctcattgtaatagttgtcttgtggattttgtcagtgattggcaaatggttcaacttcctgaccttattctacttatcctttgtcttgctgcacacggtgccagtgatctatgagaaacatgatgtccagattgatgcttttgctgagaaggcatggattgagattaagaagcagtatgcagtgtttgatgcgaatgttttgagtaagatacccaagggtccagtgaaagagaagaagaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

271

Amino Acids

30.58

Weight (kDa)

8.84

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	667
AccBSI	CCGCTC	2 cut(s)	63, 173
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	4 cut(s)	61, 171, 243, 535
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	197, 462
AcyI	GRCGYC	2 cut(s)	29, 135
AdeI	CACNNNGTG	1 cut(s)	667
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	344, 461, 509, 622
AhdI	GACNNNNNGTC	2 cut(s)	100, 166
AjnI	CCWGG	1 cut(s)	22
AlwI	GGATC	1 cut(s)	212
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	2 cut(s)	111, 211
ApeKI	GCWGC	1 cut(s)	658
ApoI	RAATTY	2 cut(s)	197, 462
AspS9I	GGNCC	3 cut(s)	235, 408, 788
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	3 cut(s)	235, 408, 788
BanI	GGYRCC	1 cut(s)	667
BbsI	GAAGAC	2 cut(s)	66, 75
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	645
BceAI	ACGGC	3 cut(s)	85, 104, 151
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	660
Bme1390I	CCNGG	2 cut(s)	24, 215
Bme18I	GGWCC	3 cut(s)	235, 408, 788
BmeRI	GACNNNNNGTC	2 cut(s)	100, 166
BmgT120I	GGNCC	3 cut(s)	235, 408, 788
BmiI	GGNNCC	5 cut(s)	310, 438, 524, 669, 789
BmrFI	CCNGG	2 cut(s)	24, 215
BmsI	GCATC	4 cut(s)	106, 554, 694, 748
BpiI	GAAGAC	2 cut(s)	66, 75
Bpu10I	CCTNAGC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	215
BsaHI	GRCGYC	2 cut(s)	29, 135
BsaJI	CCNNGG	3 cut(s)	23, 238, 783
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	671, 791
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	23, 238, 783
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	3 cut(s)	141, 491, 705
BseNI	ACTGG	2 cut(s)	671, 791
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	645
BsgI	GTGCAG	2 cut(s)	480, 644
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	113, 213
BshNI	GGYRCC	1 cut(s)	667
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	214, 467
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	113, 213
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	45, 204, 484, 675
BspACI	CCGC	4 cut(s)	61, 171, 243, 535
BspANI	GGCC	2 cut(s)	113, 213
BspCNI	CTCAG	3 cut(s)	142, 492, 706
BspEI	TCCGGA	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	310, 438, 524, 669, 789
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	667
BsrBI	CCGCTC	2 cut(s)	63, 173
BsrI	ACTGG	2 cut(s)	671, 791
BssECI	CCNNGG	3 cut(s)	23, 238, 783
BssMI	GATC	4 cut(s)	45, 204, 484, 675
BssNI	GRCGYC	2 cut(s)	29, 135
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	316, 667
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	29, 135
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	150, 500, 714
BstKTI	GATC	4 cut(s)	48, 207, 487, 678
BstMBI	GATC	4 cut(s)	45, 204, 484, 675
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	667, 719
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	22, 213
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	2 cut(s)	66, 75
BstX2I	RGATCY	2 cut(s)	45, 204
BstYI	RGATCY	2 cut(s)	45, 204
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	113, 213
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	6 cut(s)	312, 497, 609, 678, 756, 798
BveI	ACCTGC	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	235, 408, 788
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	5 cut(s)	37, 163, 527, 689, 723
CviJI	RGCY	9 cut(s)	10, 100, 113, 127, 149, 213, 223, 311, 437
CviKI_1	RGCY	9 cut(s)	10, 100, 113, 127, 149, 213, 223, 311, 437
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	3 cut(s)	150, 500, 714
DpnI	GATC	4 cut(s)	47, 206, 486, 677
DpnII	GATC	4 cut(s)	45, 204, 484, 675
DraIII	CACNNNGTG	1 cut(s)	667
DriI	GACNNNNNGTC	2 cut(s)	100, 166
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	2 cut(s)	100, 166
EarI	CTCTTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	783
Eco47I	GGWCC	3 cut(s)	235, 408, 788
Eco52I	CGGCCG	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	5 cut(s)	40, 166, 530, 692, 726
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	5 cut(s)	36, 162, 526, 688, 722
FauI	CCCGC	1 cut(s)	528
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	659
Fsp4HI	GCNGC	1 cut(s)	659
FspBI	CTAG	1 cut(s)	814
GluI	GCNGC	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	113, 213
HapII	CCGG	2 cut(s)	214, 467
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	2 cut(s)	29, 135
Hin1II	CATG	5 cut(s)	40, 166, 530, 692, 726
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	214, 467
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	6 cut(s)	176, 202, 291, 467, 628, 697
Hpy99I	CGWCG	5 cut(s)	34, 73, 82, 92, 95
HpyAV	CCTTC	3 cut(s)	103, 712, 802
HpyCH4III	ACNGT	2 cut(s)	316, 667
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	4 cut(s)	497, 545, 661, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	667, 719
HpyF3I	CTNAG	3 cut(s)	150, 500, 714
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	2 cut(s)	29, 135
Hsp92II	CATG	5 cut(s)	40, 166, 530, 692, 726
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	45, 204, 484, 675
LmnI	GCTCC	3 cut(s)	68, 308, 442
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	4 cut(s)	106, 554, 694, 748
MaeI	CTAG	1 cut(s)	814
MaeII	ACGT	1 cut(s)	135
MalI	GATC	4 cut(s)	47, 206, 486, 677
MbiI	CCGCTC	2 cut(s)	63, 173
MboI	GATC	4 cut(s)	45, 204, 484, 675
MboII	GAAGA	7 cut(s)	26, 55, 66, 75, 199, 391, 814
MflI	RGATCY	2 cut(s)	45, 204
MluCI	AATT	3 cut(s)	197, 462, 540
MmeI	TCCRAC	2 cut(s)	111, 216
MroI	TCCGGA	1 cut(s)	466
MseI	TTAA	1 cut(s)	735
MspI	CCGG	2 cut(s)	214, 467
MspR9I	CCNGG	2 cut(s)	24, 215
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	667, 719
NciI	CCSGG	1 cut(s)	215
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	4 cut(s)	45, 204, 484, 675
NlaIII	CATG	5 cut(s)	40, 166, 530, 692, 726
NlaIV	GGNNCC	5 cut(s)	310, 438, 524, 669, 789
NmeAIII	GCCGAG	1 cut(s)	219
NspI	RCATGY	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 77
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	660
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	310, 438, 524, 669, 789
PspPI	GGNCC	3 cut(s)	235, 408, 788
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	45, 204
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	4 cut(s)	45, 204, 484, 675
Sau96I	GGNCC	3 cut(s)	235, 408, 788
ScrFI	CCNGG	2 cut(s)	24, 215
SetI	ASST	4 cut(s)	138, 237, 256, 635
SfaNI	GCATC	4 cut(s)	106, 554, 694, 748
SinI	GGWCC	3 cut(s)	235, 408, 788
Sse9I	AATT	3 cut(s)	197, 462, 540
SsiI	CCGC	4 cut(s)	61, 171, 243, 535
SspMI	CTAG	1 cut(s)	814
StyD4I	CCNGG	2 cut(s)	22, 213
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	316, 667
TaiI	ACGT	1 cut(s)	138
TasI	AATT	3 cut(s)	197, 462, 540
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	6 cut(s)	319, 504, 609, 678, 756, 798
TseI	GCWGC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	6 cut(s)	319, 504, 609, 678, 756, 798
VpaK11BI	GGWCC	3 cut(s)	235, 408, 788
XapI	RAATTY	2 cut(s)	197, 462
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	814
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.