Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

12317036 .. 12320074

Gene Structure 3039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGCTCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAAGATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTTGTTCGGACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGGTTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTGTTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAAAGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAATCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGAAATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACTTCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACAAGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGTATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCGTTGAAGAACAAGAAGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0080167 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

275

Amino Acids

30.53

Weight (kDa)

8.32

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	90 - 244	2.1e-58	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	4 cut(s)	5, 214, 255, 624
AclWI	GGATC	3 cut(s)	94, 576, 784
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	3 cut(s)	479, 486, 501
AcvI	CACGTG	1 cut(s)	385
AfaI	GTAC	2 cut(s)	312, 359
AfiI	CCNNNNNNNGG	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	347, 634, 808
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	5 cut(s)	50, 329, 499, 659, 745
AluI	AGCT	5 cut(s)	50, 329, 499, 659, 745
Alw21I	GWGCWC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	94, 576, 784
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	232, 329
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	125, 737
BanII	GRGCYC	2 cut(s)	513, 747
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	5 cut(s)	120, 156, 170, 183, 711
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	2 cut(s)	244, 316
BccI	CCATC	4 cut(s)	73, 111, 346, 369
BceAI	ACGGC	1 cut(s)	787
BcnI	CCSGG	1 cut(s)	598
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	233, 330
BlsI	GCNGC	2 cut(s)	234, 331
Bme1390I	CCNGG	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	5 cut(s)	120, 156, 170, 183, 711
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	557, 731
BpuMI	CCSGG	1 cut(s)	598
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	585, 741
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMI	GCAATG	2 cut(s)	585, 741
BseMII	CTCAG	2 cut(s)	33, 526
BseXI	GCAGC	2 cut(s)	244, 316
BshFI	GGCC	1 cut(s)	802
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	266, 597
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	802
Bsp1286I	GDGCHC	2 cut(s)	513, 747
Bsp143I	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
BspACI	CCGC	4 cut(s)	5, 214, 255, 624
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	2 cut(s)	34, 525
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	3 cut(s)	94, 576, 784
BspQI	GCTCTTC	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	585, 741
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
Bst4CI	ACNGT	3 cut(s)	110, 530, 679
Bst6I	CTCTTC	3 cut(s)	184, 544, 677
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	48, 267, 501
BstDEI	CTNAG	3 cut(s)	42, 168, 512
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	775
BstKTI	GATC	6 cut(s)	36, 102, 525, 571, 741, 792
BstMBI	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 656, 751
BstSCI	CCNGG	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	244, 316
BstV2I	GAAGAC	5 cut(s)	120, 156, 170, 183, 711
BstX2I	RGATCY	3 cut(s)	99, 568, 789
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	3 cut(s)	99, 568, 789
BsuRI	GGCC	1 cut(s)	802
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	3 cut(s)	48, 267, 501
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	800
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	311, 358
CviAII	CATG	2 cut(s)	20, 280
CviQI	GTAC	2 cut(s)	311, 358
DdeI	CTNAG	3 cut(s)	42, 168, 512
DpnI	GATC	6 cut(s)	35, 101, 524, 570, 740, 791
DpnII	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
Eam1104I	CTCTTC	3 cut(s)	184, 544, 677
EarI	CTCTTC	3 cut(s)	184, 544, 677
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	745
Eco24I	GRGCYC	2 cut(s)	513, 747
Eco32I	GATATC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	3 cut(s)	479, 486, 501
Eco72I	CACGTG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	513, 747
FaeI	CATG	2 cut(s)	23, 283
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	19, 279
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	2 cut(s)	233, 330
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	2 cut(s)	513, 747
Fsp4HI	GCNGC	2 cut(s)	233, 330
GluI	GCNGC	2 cut(s)	233, 330
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	2 cut(s)	266, 597
HgaI	GACGC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	23, 283
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	6 cut(s)	26, 71, 116, 460, 516, 534
HpaII	CCGG	2 cut(s)	266, 597
HphI	GGTGA	2 cut(s)	125, 737
Hpy166II	GTNNAC	3 cut(s)	211, 311, 715
Hpy188I	TCNGA	4 cut(s)	94, 142, 224, 515
Hpy188III	TCNNGA	7 cut(s)	41, 464, 520, 561, 574, 640, 748
Hpy8I	GTNNAC	3 cut(s)	211, 311, 715
HpyAV	CCTTC	3 cut(s)	195, 558, 769
HpyCH4III	ACNGT	3 cut(s)	110, 530, 679
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	557, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 656, 751
HpyF3I	CTNAG	3 cut(s)	42, 168, 512
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	23, 283
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	244, 316
LweI	GCATC	1 cut(s)	566
MaeII	ACGT	1 cut(s)	384
MalI	GATC	6 cut(s)	35, 101, 524, 570, 740, 791
MboI	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
MflI	RGATCY	3 cut(s)	99, 568, 789
MhlI	GDGCHC	2 cut(s)	513, 747
MluCI	AATT	3 cut(s)	347, 552, 578
MmeI	TCCRAC	1 cut(s)	747
MnlI	CCTC	5 cut(s)	49, 187, 462, 593, 693
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	3 cut(s)	18, 108, 111
MspA1I	CMGCKG	2 cut(s)	50, 329
MspI	CCGG	2 cut(s)	266, 597
MspR9I	CCNGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	3 cut(s)	329, 656, 751
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	23, 283
NlaIV	GGNNCC	1 cut(s)	681
NmeAIII	GCCGAG	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	111
PciSI	GCTCTTC	1 cut(s)	677
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	6 cut(s)	26, 71, 116, 460, 516, 534
PflFI	GACNNNGTC	1 cut(s)	710
PkrI	GCNGC	2 cut(s)	234, 331
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	747
PspCI	CACGTG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	800
PsuI	RGATCY	3 cut(s)	99, 568, 789
PsyI	GACNNNGTC	1 cut(s)	710
PvuII	CAGCTG	2 cut(s)	50, 329
RsaI	GTAC	2 cut(s)	312, 359
RsaNI	GTAC	2 cut(s)	311, 358
RseI	CAYNNNNRTG	3 cut(s)	18, 108, 111
SacI	GAGCTC	1 cut(s)	747
SalI	GTCGAC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	233, 330
Sau3AI	GATC	6 cut(s)	33, 99, 522, 568, 738, 789
Sau96I	GGNCC	1 cut(s)	800
ScrFI	CCNGG	1 cut(s)	598
SduI	GDGCHC	2 cut(s)	513, 747
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	3 cut(s)	18, 108, 111
SmlI	CTYRAG	2 cut(s)	572, 746
SmoI	CTYRAG	2 cut(s)	572, 746
Sse9I	AATT	3 cut(s)	347, 552, 578
SsiI	CCGC	4 cut(s)	5, 214, 255, 624
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	596
TaaI	ACNGT	3 cut(s)	110, 530, 679
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	4 cut(s)	203, 519, 714, 741
TasI	AATT	3 cut(s)	347, 552, 578
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	6 cut(s)	26, 71, 116, 460, 516, 534
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	768
TseI	GCWGC	2 cut(s)	232, 329
TspDTI	ATGAA	9 cut(s)	39, 123, 162, 212, 230, 268, 427, 461, 717
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	768
Tth111I	GACNNNGTC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	714
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.