Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

29017612 .. 29019622

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGGAGCCAGCACCGACACCAACGCCAGAATCGCTGGTGGATAAGATCTACGGCCACCACGCATCGGCCTCTTCATCGGACTCCGACGACGACAAGAAGAAGTCCAAGCACAACGTCGTTAAACCCAAGGTTGAAGACGACAAGCCGTCTACTCACGATTCCGTCAAATCCAAGATTTTTAGGCTCTTCGGTAGAGAGAAGCCCGTTCACAAGGTTTTGGGCGGTGGCAAACCTGCTGATGTCCTCCTATGGAGGAACAAGAAAATTTCTGCAAGTGTGCTTGGTGGTGCTACTGTATTATGGGTTTTCTTTGAGTTGCTTGAATACCATCTAATCACTCTGGTGTGCCATTTATTGATACTCTCTCTGGCTGTCTTTTTCCTGTGGTCCAATGCATCAACCTTTATCAACAAGTCTCCACCACAAATCCCAAAGGTTCAACTCTCTGAGAGGACTGTCCTTGATTTGGCATCTGCATTGAGAATTGAGCTCAACAGAGCATTTCACATTTTGCGGGATATTGCATCTGGGAGAGATTTGAAGACGTTCCTTGGTGTTATAGCCATCTTGTGGATTCTGTCAGTGGTTGGGAAATGGTTCAACTTCCTGACCTTATTCTACATAACTTTTGTGTTGCTGCACACATTGCCGGTGATTTATGAGAAATATGATGTGCAGATTGATGCCTTTTCTGAGAAGGCATTGATTGAGTTCAAGAAGCAGTACGCAGTGTTTGATGCCAAGGTTTTGAGTAAAATTCCCAAGGGCCCATTGAAAGAAAAGAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

266

Amino Acids

29.89

Weight (kDa)

9.47

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	3 cut(s)	5, 225, 517
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	267, 759
AfaI	GTAC	1 cut(s)	728
AfiI	CCNNNNNNNGG	3 cut(s)	67, 469, 573
AgsI	TTSAA	7 cut(s)	137, 326, 443, 544, 604, 718, 778
AhdI	GACNNNNNGTC	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	344
AluBI	AGCT	1 cut(s)	493
AluI	AGCT	1 cut(s)	493
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	423
AoxI	GGCC	3 cut(s)	55, 69, 769
ApaI	GGGCCC	1 cut(s)	773
ApeKI	GCWGC	1 cut(s)	640
ApoI	RAATTY	2 cut(s)	267, 759
Asp700I	GAANNNNTTC	2 cut(s)	548, 599
AspS9I	GGNCC	3 cut(s)	390, 769, 770
AsuHPI	GGTGA	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	773
BanII	GRGCYC	2 cut(s)	495, 773
BbsI	GAAGAC	2 cut(s)	144, 551
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	2 cut(s)	339, 575
BceAI	ACGGC	2 cut(s)	70, 133
BcoDI	GTCTC	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	244
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	1 cut(s)	641
BlsI	GCNGC	1 cut(s)	642
Bme18I	GGWCC	1 cut(s)	390
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	390, 769, 770
BmiI	GGNNCC	2 cut(s)	9, 771
BmsI	GCATC	6 cut(s)	74, 407, 482, 536, 676, 730
BpiI	GAAGAC	2 cut(s)	144, 551
BsaJI	CCNNGG	4 cut(s)	129, 553, 744, 765
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 469, 573
Bse118I	RCCGGY	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	647
BseDI	CCNNGG	4 cut(s)	129, 553, 744, 765
BseLI	CCNNNNNNNGG	3 cut(s)	67, 469, 573
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	441, 687
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	1 cut(s)	627
BsgI	GTGCAG	2 cut(s)	626, 698
BshFI	GGCC	3 cut(s)	57, 71, 771
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	67, 469, 573
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	57, 71, 771
Bsp120I	GGGCCC	1 cut(s)	769
Bsp1286I	GDGCHC	2 cut(s)	495, 773
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	5, 225, 517
BspANI	GGCC	3 cut(s)	57, 71, 771
BspCNI	CTCAG	2 cut(s)	442, 688
BspLI	GGNNCC	2 cut(s)	9, 771
BspMI	ACCTGC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	4 cut(s)	129, 553, 744, 765
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	4 cut(s)	129, 553, 744, 765
Bst4CI	ACNGT	2 cut(s)	298, 460
Bst6I	CTCTTC	2 cut(s)	79, 194
BstAPI	GCANNNNNTGC	1 cut(s)	649
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	450, 696
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 34, 649
BstSLI	GKGCMC	1 cut(s)	773
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	2 cut(s)	144, 551
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	57, 71, 771
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	591, 738
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	390, 769, 770
Csp6I	GTAC	1 cut(s)	727
CviQI	GTAC	1 cut(s)	727
DdeI	CTNAG	2 cut(s)	450, 696
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	79, 194
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	2 cut(s)	79, 194
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	4 cut(s)	129, 553, 744, 765
Eco24I	GRGCYC	2 cut(s)	495, 773
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	769
EcoT14I	CCWWGG	4 cut(s)	129, 553, 744, 765
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	2 cut(s)	495, 773
ErhI	CCWWGG	4 cut(s)	129, 553, 744, 765
FaiI	YATR	6 cut(s)	253, 304, 563, 626, 663, 672
FauI	CCCGC	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	641
FriOI	GRGCYC	2 cut(s)	495, 773
Fsp4HI	GCNGC	1 cut(s)	641
GluI	GCNGC	1 cut(s)	641
HaeIII	GGCC	3 cut(s)	57, 71, 771
HapII	CCGG	1 cut(s)	653
HinfI	GANTC	4 cut(s)	32, 83, 161, 577
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	2 cut(s)	153, 211
Hpy188I	TCNGA	4 cut(s)	82, 88, 451, 697
Hpy188III	TCNNGA	3 cut(s)	158, 610, 718
Hpy8I	GTNNAC	2 cut(s)	153, 211
Hpy99I	CGWCG	3 cut(s)	92, 95, 122
HpyAV	CCTTC	2 cut(s)	694, 784
HpyCH4III	ACNGT	2 cut(s)	298, 460
HpyCH4IV	ACGT	2 cut(s)	117, 548
HpyCH4V	TGCA	6 cut(s)	275, 398, 479, 527, 643, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 34, 649
HpyF3I	CTNAG	2 cut(s)	450, 696
HpySE526I	ACGT	2 cut(s)	117, 548
Kzo9I	GATC	1 cut(s)	48
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	6 cut(s)	74, 407, 482, 536, 676, 730
MaeII	ACGT	2 cut(s)	117, 548
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	5 cut(s)	66, 112, 149, 181, 556
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	495, 773
MluCI	AATT	3 cut(s)	267, 486, 759
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	82, 249, 257, 447
Mph1103I	ATGCAT	1 cut(s)	400
MroXI	GAANNNNTTC	2 cut(s)	548, 599
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	3 cut(s)	11, 34, 649
NdeII	GATC	1 cut(s)	48
NlaIV	GGNNCC	2 cut(s)	9, 771
NsiI	ATGCAT	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	194
PdmI	GAANNNNTTC	2 cut(s)	548, 599
PfeI	GAWTC	3 cut(s)	32, 161, 577
PflMI	CCANNNNNTGG	1 cut(s)	573
PkrI	GCNGC	1 cut(s)	642
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	9, 771
PspOMI	GGGCCC	1 cut(s)	769
PspPI	GGNCC	3 cut(s)	390, 769, 770
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	1 cut(s)	728
RsaNI	GTAC	1 cut(s)	727
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	641
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	390, 769, 770
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	495, 773
SfaNI	GCATC	6 cut(s)	74, 407, 482, 536, 676, 730
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	267, 486, 759
SsiI	CCGC	3 cut(s)	5, 225, 517
SstI	GAGCTC	1 cut(s)	495
StyI	CCWWGG	4 cut(s)	129, 553, 744, 765
TaaI	ACNGT	2 cut(s)	298, 460
TaiI	ACGT	2 cut(s)	120, 551
TasI	AATT	3 cut(s)	267, 486, 759
TfiI	GAWTC	3 cut(s)	32, 161, 577
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	591, 738
TseI	GCWGC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	591, 738
Van91I	CCANNNNNTGG	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	2 cut(s)	267, 759
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	2 cut(s)	548, 599
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.