Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

22241109 .. 22243678

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCCGAGCCAGAAGAGATTCCCGGCGAGTCGTTCATGGAGAAGATCCGCTCCCACACCCGCTCCTCCTCCTCGTCTTCGTCGTCTTCCGACGACGACAAGCCGTCCAAGAAGGCCGATTCCGTCATGCCGGCTAAGGATGACGATGACGTCATGCACAAGGTTGAGGAAGTCCTCGACAAGGCGCACGATTCCGTCAAGTCCAACAAGTTCAGGATCTTCGGCCGGGAAAAGCCCGTTCACAAGGTCCTCGGTGGCGGCAAACCTGCTGATGTCCTCCTATGGAGGGACAAGAAAGAATCTGCAAGTGTTCTTGGTGCAGCCACTGTACTGTGGATTTTTTTTGAGTGTCTTGAATATCATTTGATAACTCTGTTCTGCCATATAATGATCCTTTTTCTGGCTGTCTTCTTCTTGTGGTCCAATGGATCTTCCTTTATCAACAAGGCTCCACCCGAAATCCCAAAAGTTCAAATTCCGGAGAAGTGTGTTCTTGATATTGCCTCTGCACTGAGGATTGAACTCAACAAAGGGTTCCATGTTCTGCGGGAAATTGCATCTGGGAGAGATTTGAAGACATTCCTCGGTGTTATAGCTGTCTTGTGGATTGTGTCAGTGATTGGCAAATGCTTCAGCTTCCTGACCTTATTCTACTTAACCTTTGTCTTGCTGCACTCAGCGCCACTGATCTACGAGAAACATGAGGACCAGATTGATGCTGTTGCTGAGAAGGCATGGATCGAGTTTAAGAAGCAGTATGCAGTGTTCAATGAAAAGGTTTTGAGTAAGATACCCAAAGGTCCGGTGAAAGAGAAGAAGAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

276

Amino Acids

31.08

Weight (kDa)

7.69

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	90 - 245	1.2e-57	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	274
AccBSI	CCGCTC	2 cut(s)	51, 63
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	4 cut(s)	49, 61, 258, 547
AclWI	GGATC	5 cut(s)	40, 224, 385, 436, 746
AcoI	YGGCCR	2 cut(s)	3, 223
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	3 cut(s)	181, 286, 400
AgsI	TTSAA	5 cut(s)	356, 473, 521, 574, 769
AhdI	GACNNNNNGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	596, 636
AluI	AGCT	2 cut(s)	596, 636
AlwI	GGATC	5 cut(s)	40, 224, 385, 436, 746
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	3 cut(s)	3, 114, 223
ApeKI	GCWGC	2 cut(s)	320, 670
ApoI	RAATTY	1 cut(s)	474
Asp700I	GAANNNNTTC	2 cut(s)	18, 578
AspLEI	GCGC	2 cut(s)	187, 682
AspS9I	GGNCC	4 cut(s)	247, 420, 706, 800
AsuC2I	CCSGG	2 cut(s)	24, 227
AsuHPI	GGTGA	1 cut(s)	817
AvaII	GGWCC	4 cut(s)	247, 420, 706, 800
BbsI	GAAGAC	4 cut(s)	69, 78, 400, 581
BbvI	GCAGC	2 cut(s)	332, 657
BceAI	ACGGC	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	24, 227
BfoI	RGCGCY	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	259, 321, 671
BlsI	GCNGC	3 cut(s)	260, 322, 672
Bme1390I	CCNGG	2 cut(s)	24, 227
Bme18I	GGWCC	4 cut(s)	247, 420, 706, 800
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgT120I	GGNCC	4 cut(s)	247, 420, 706, 800
BmiI	GGNNCC	2 cut(s)	450, 536
BmrFI	CCNGG	2 cut(s)	24, 227
BmsI	GCATC	2 cut(s)	566, 706
BpiI	GAAGAC	4 cut(s)	69, 78, 400, 581
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	24, 227
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	250, 583
BsaWI	WCCGGW	2 cut(s)	478, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 286, 400
Bse118I	RCCGGY	1 cut(s)	130
BseAI	TCCGGA	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	250, 583
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	181, 286, 400
BseMII	CTCAG	3 cut(s)	503, 690, 717
BseRI	GAGGAG	3 cut(s)	55, 58, 61
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	332, 657
BsgI	GTGCAG	3 cut(s)	339, 492, 656
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	5, 116, 225
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	5 cut(s)	24, 131, 226, 479, 803
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	181, 286, 400
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	5, 116, 225
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
BspACI	CCGC	4 cut(s)	49, 61, 258, 547
BspANI	GGCC	3 cut(s)	5, 116, 225
BspCNI	CTCAG	3 cut(s)	504, 689, 718
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	450, 536
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	5 cut(s)	40, 224, 385, 436, 746
BsrBI	CCGCTC	2 cut(s)	51, 63
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	250, 583
BssMI	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	328, 333
Bst6I	CTCTTC	2 cut(s)	9, 812
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	135, 512, 676, 726
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	2 cut(s)	187, 682
BstKTI	GATC	6 cut(s)	48, 219, 393, 431, 690, 741
BstMBI	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	679, 731
BstSCI	CCNGG	2 cut(s)	22, 225
BstV1I	GCAGC	2 cut(s)	332, 657
BstV2I	GAAGAC	4 cut(s)	69, 78, 400, 581
BstX2I	RGATCY	3 cut(s)	45, 216, 428
BstYI	RGATCY	3 cut(s)	45, 216, 428
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	5, 116, 225
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	5 cut(s)	324, 509, 621, 683, 768
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	2 cut(s)	187, 682
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	4 cut(s)	247, 420, 706, 800
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	6 cut(s)	37, 127, 154, 539, 701, 735
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	4 cut(s)	135, 512, 676, 726
DpnI	GATC	6 cut(s)	47, 218, 392, 430, 689, 740
DpnII	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
DrdI	GACNNNNNNGTC	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	2 cut(s)	3, 223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	9, 812
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	2 cut(s)	9, 812
EclXI	CGGCCG	1 cut(s)	223
Eco47I	GGWCC	4 cut(s)	247, 420, 706, 800
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	616
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	247
FaeI	CATG	6 cut(s)	40, 130, 157, 542, 704, 738
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	6 cut(s)	36, 126, 153, 538, 700, 734
FauI	CCCGC	2 cut(s)	68, 540
Fnu4HI	GCNGC	3 cut(s)	259, 321, 671
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	259, 321, 671
GlaI	GCGC	2 cut(s)	186, 681
GluI	GCNGC	3 cut(s)	259, 321, 671
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	3 cut(s)	5, 116, 225
HapII	CCGG	5 cut(s)	24, 131, 226, 479, 803
HhaI	GCGC	2 cut(s)	187, 682
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	6 cut(s)	40, 130, 157, 542, 704, 738
Hin6I	GCGC	2 cut(s)	185, 680
HinP1I	GCGC	2 cut(s)	185, 680
HinfI	GANTC	5 cut(s)	19, 29, 119, 191, 299
HpaII	CCGG	5 cut(s)	24, 131, 226, 479, 803
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	5 cut(s)	214, 353, 479, 494, 640
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	3 cut(s)	85, 95, 98
HpyAV	CCTTC	2 cut(s)	106, 724
HpyCH4III	ACNGT	2 cut(s)	328, 333
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	157, 305, 320, 509, 557, 673, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	679, 731
HpyF3I	CTNAG	4 cut(s)	135, 512, 676, 726
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	6 cut(s)	40, 130, 157, 542, 704, 738
HspAI	GCGC	2 cut(s)	185, 680
Kpn2I	TCCGGA	1 cut(s)	478
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
LmnI	GCTCC	3 cut(s)	56, 68, 454
Lsp1109I	GCAGC	2 cut(s)	332, 657
LweI	GCATC	2 cut(s)	566, 706
MaeII	ACGT	1 cut(s)	150
MalI	GATC	6 cut(s)	47, 218, 392, 430, 689, 740
MbiI	CCGCTC	2 cut(s)	51, 63
MboI	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
MflI	RGATCY	3 cut(s)	45, 216, 428
MluCI	AATT	2 cut(s)	474, 552
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	114, 228
MroI	TCCGGA	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	18, 578
MseI	TTAA	2 cut(s)	656, 747
MspI	CCGG	5 cut(s)	24, 131, 226, 479, 803
MspR9I	CCNGG	2 cut(s)	24, 227
MwoI	GCNNNNNNNGC	2 cut(s)	679, 731
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	2 cut(s)	24, 227
NdeII	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	6 cut(s)	40, 130, 157, 542, 704, 738
NlaIV	GGNNCC	2 cut(s)	450, 536
NmeAIII	GCCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	2 cut(s)	18, 578
PfeI	GAWTC	4 cut(s)	19, 119, 191, 299
PkrI	GCNGC	3 cut(s)	260, 322, 672
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	450, 536
PspPI	GGNCC	4 cut(s)	247, 420, 706, 800
PspPPI	RGGWCCY	1 cut(s)	247
PsrI	GAACNNNNNNTAC	2 cut(s)	749, 781
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	3 cut(s)	45, 216, 428
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	656, 747
SatI	GCNGC	3 cut(s)	259, 321, 671
Sau3AI	GATC	6 cut(s)	45, 216, 390, 428, 687, 738
Sau96I	GGNCC	4 cut(s)	247, 420, 706, 800
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	24, 227
SfaNI	GCATC	2 cut(s)	566, 706
SinI	GGWCC	4 cut(s)	247, 420, 706, 800
Sse9I	AATT	2 cut(s)	474, 552
SsiI	CCGC	4 cut(s)	49, 61, 258, 547
StyD4I	CCNGG	2 cut(s)	22, 225
TaaI	ACNGT	2 cut(s)	328, 333
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	177, 741
TasI	AATT	2 cut(s)	474, 552
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	4 cut(s)	19, 119, 191, 299
Tru1I	TTAA	2 cut(s)	656, 747
Tru9I	TTAA	2 cut(s)	656, 747
TscAI	CASTG	5 cut(s)	331, 516, 621, 690, 768
TseI	GCWGC	2 cut(s)	320, 670
TspDTI	ATGAA	2 cut(s)	25, 786
TspGWI	ACGGA	2 cut(s)	112, 184
TspRI	CASTG	5 cut(s)	331, 516, 621, 690, 768
VpaK11BI	GGWCC	4 cut(s)	247, 420, 706, 800
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	474
XmnI	GAANNNNTTC	2 cut(s)	18, 578
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.