Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Reverse (-)

2790026 .. 2792249

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAGAGCCAGAAGAGATACCAGGGGCGTCGCTCATGGAGAAGATCTACTCCCACCACCGCTCCTCGTCGTCTTCGTCATCTTCCGACGACGACAAGCCGTCCAAGGAGGCCGATGCCGTCAAGAAGGCCGATGACGTCAAGCACAAGGCTGAGGAACACGACATGCCGTCCGCTCACGATTCCGTCAAGTCCAACAAATTCAGGATCTTCGGCCGGGAAAAGCCCGTTCATAACGTCCTCGGCGGTGGCAAACCTGCTGATGTCCTCCTATGGAGGGACAAGAAAGTATCTGGAAGTGTTCTTGGTGGAGCCACTGTGCTATGGATTTTCTTTGAGTTGCTTGAATACCATTTGATAACTCTGGTCTGCCATATGGCTCCACCAGAAATCCCAAAAGTTCAAATTCCGGAGAAGTGTGTCCTTGATCTTGCCTCTGCACTGAGGATTGAACTCAACAAAGGGTTCTATGTTCTGCGGGAAATTGCATCTGGGAGAGATTTGAGGACATTCCTCATTGTTATAGTTGTCTTGTGGATTGTGTCAGTGATTGGCAAATGGTTCAACTTCCTGACCTTATTCTACTTATCCTTTGTCTTGCTGCACACAGTGCCAGTGATCTATGAGAAACATGATGTCCAGATTGATGCTTTTGCTGAGAAGGCATGGATTGAGATTAAGAAGCAGTATGCAGTGTTTGATGCGAATGTTTTGAGTAAGATACCCAAGGGTCCAGTGAAAGAGAAGAAGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

252

Amino Acids

28.42

Weight (kDa)

7.78

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	87 - 126	1.9e-13	Reticulon
Reticulon	PF02453	128 - 222	4e-30	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	265
AccBSI	CCGCTC	2 cut(s)	63, 176
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	4 cut(s)	61, 174, 246, 478
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	200, 405
AcyI	GRCGYC	2 cut(s)	29, 138
AdeI	CACNNNGTG	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	347, 404, 452, 565
AhdI	GACNNNNNGTC	2 cut(s)	100, 169
AjnI	CCWGG	1 cut(s)	22
AlwI	GGATC	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	3 cut(s)	111, 129, 214
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	200, 405
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	588
BceAI	ACGGC	3 cut(s)	85, 104, 154
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	757
BfuAI	ACCTGC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	2 cut(s)	24, 218
Bme18I	GGWCC	1 cut(s)	731
BmeRI	GACNNNNNGTC	2 cut(s)	100, 169
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	3 cut(s)	313, 381, 732
BmrFI	CCNGG	2 cut(s)	24, 218
BmsI	GCATC	4 cut(s)	106, 497, 637, 691
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	29, 138
BsaJI	CCNNGG	4 cut(s)	23, 105, 241, 726
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	614, 734
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	23, 105, 241, 726
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	3 cut(s)	144, 434, 648
BseNI	ACTGG	2 cut(s)	614, 734
BseRI	GAGGAG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	588
BsgI	GTGCAG	2 cut(s)	423, 587
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	113, 131, 216
BsiEI	CGRYCG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	217, 410
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	113, 131, 216
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	45, 207, 427, 618
BspACI	CCGC	4 cut(s)	61, 174, 246, 478
BspANI	GGCC	3 cut(s)	113, 131, 216
BspCNI	CTCAG	3 cut(s)	145, 435, 649
BspEI	TCCGGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	313, 381, 732
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	215
BsrBI	CCGCTC	2 cut(s)	63, 176
BsrI	ACTGG	2 cut(s)	614, 734
BssECI	CCNNGG	4 cut(s)	23, 105, 241, 726
BssMI	GATC	4 cut(s)	45, 207, 427, 618
BssNI	GRCGYC	2 cut(s)	29, 138
BssT1I	CCWWGG	2 cut(s)	105, 726
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	319, 610
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	29, 138
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	153, 443, 657
BstKTI	GATC	4 cut(s)	48, 210, 430, 621
BstMBI	GATC	4 cut(s)	45, 207, 427, 618
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 662
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	22, 216
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	45, 207
BstYI	RGATCY	2 cut(s)	45, 207
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	113, 131, 216
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	7 cut(s)	315, 440, 552, 615, 621, 699, 741
BveI	ACCTGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	731
CseI	GACGC	1 cut(s)	18
CviAII	CATG	4 cut(s)	37, 166, 632, 666
CviJI	RGCY	9 cut(s)	10, 100, 113, 131, 152, 216, 226, 314, 380
CviKI_1	RGCY	9 cut(s)	10, 100, 113, 131, 152, 216, 226, 314, 380
DdeI	CTNAG	3 cut(s)	153, 443, 657
DpnI	GATC	4 cut(s)	47, 209, 429, 620
DpnII	GATC	4 cut(s)	45, 207, 427, 618
DraIII	CACNNNGTG	1 cut(s)	610
DriI	GACNNNNNGTC	2 cut(s)	100, 169
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	2 cut(s)	100, 169
EarI	CTCTTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	105, 726
Eco47I	GGWCC	1 cut(s)	731
Eco52I	CGGCCG	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	105, 726
ErhI	CCWWGG	2 cut(s)	105, 726
FaeI	CATG	4 cut(s)	40, 169, 635, 669
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	4 cut(s)	36, 165, 631, 665
FauI	CCCGC	1 cut(s)	471
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	757
GluI	GCNGC	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	113, 131, 216
HapII	CCGG	2 cut(s)	217, 410
HgaI	GACGC	1 cut(s)	18
Hin1I	GRCGYC	2 cut(s)	29, 138
Hin1II	CATG	4 cut(s)	40, 169, 635, 669
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	217, 410
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	7 cut(s)	124, 179, 205, 294, 410, 571, 640
Hpy99I	CGWCG	4 cut(s)	34, 73, 92, 95
HpyAV	CCTTC	3 cut(s)	121, 655, 745
HpyCH4III	ACNGT	2 cut(s)	319, 610
HpyCH4IV	ACGT	2 cut(s)	138, 237
HpyCH4V	TGCA	4 cut(s)	440, 488, 604, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 662
HpyF3I	CTNAG	3 cut(s)	153, 443, 657
HpySE526I	ACGT	2 cut(s)	138, 237
Hsp92I	GRCGYC	2 cut(s)	29, 138
Hsp92II	CATG	4 cut(s)	40, 169, 635, 669
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	45, 207, 427, 618
LmnI	GCTCC	3 cut(s)	68, 311, 385
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	4 cut(s)	106, 497, 637, 691
MaeI	CTAG	1 cut(s)	757
MaeII	ACGT	2 cut(s)	138, 237
MalI	GATC	4 cut(s)	47, 209, 429, 620
MbiI	CCGCTC	2 cut(s)	63, 176
MboI	GATC	4 cut(s)	45, 207, 427, 618
MboII	GAAGA	6 cut(s)	26, 55, 66, 75, 202, 757
MflI	RGATCY	2 cut(s)	45, 207
MluCI	AATT	3 cut(s)	200, 405, 483
MmeI	TCCRAC	2 cut(s)	111, 219
MroI	TCCGGA	1 cut(s)	409
MseI	TTAA	1 cut(s)	678
MspI	CCGG	2 cut(s)	217, 410
MspR9I	CCNGG	2 cut(s)	24, 218
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	610, 662
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	4 cut(s)	45, 207, 427, 618
NlaIII	CATG	4 cut(s)	40, 169, 635, 669
NlaIV	GGNNCC	3 cut(s)	313, 381, 732
NmeAIII	GCCGAG	1 cut(s)	222
NspI	RCATGY	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	313, 381, 732
PspPI	GGNCC	1 cut(s)	731
PsuI	RGATCY	2 cut(s)	45, 207
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	4 cut(s)	45, 207, 427, 618
Sau96I	GGNCC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	24, 218
SetI	ASST	4 cut(s)	141, 240, 259, 578
SfaNI	GCATC	4 cut(s)	106, 497, 637, 691
SinI	GGWCC	1 cut(s)	731
Sse9I	AATT	3 cut(s)	200, 405, 483
SsiI	CCGC	4 cut(s)	61, 174, 246, 478
SspMI	CTAG	1 cut(s)	757
StyD4I	CCNGG	2 cut(s)	22, 216
StyI	CCWWGG	2 cut(s)	105, 726
TaaI	ACNGT	2 cut(s)	319, 610
TaiI	ACGT	2 cut(s)	141, 240
TasI	AATT	3 cut(s)	200, 405, 483
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	7 cut(s)	322, 447, 552, 615, 621, 699, 741
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	7 cut(s)	322, 447, 552, 615, 621, 699, 741
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	2 cut(s)	200, 405
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	757
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.