Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

19877584 .. 19879573

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGAGCCAAAACCAACGCCCACGGCTGAATCGCTGATGGACAAGATCTACAACCACCACTCTTCGTCGTCGTCGGACTCCGACGACGACAAGAAGTCCAAGCACGCTGCTTCCGTCAAAGCCAAGGTGGAAGACGAAAAGCCGTCGGCGCGCGATTCCGTCAAGTCCAAGATTTTCAGGCTCTTCGGCAGGGAAAAGCCCGTTCACAAGGTCTTGGGCGGCGGCAAACCTGCTGATGTCTTCCTATGGAGGAACAAGAAAATATCTGCAAGTGTGCTTGCCGGTGCCACTGTTTTATGGGTTTTCTTTGAGTTGCTCGAATACCATCTAATCACGCTGGTGTGCCATTTGTTGATACTTTTTCTGGCTGTCTTTTACCTGTGGTCCAATGCATCCAACTTTATCAACAAGTCGCAACCACAAATCCCAAAGGTTCAAATTCCAGAGAAGACTGTCCTTGAGCTTGCCTCTGCTCTGAGAATTGAACTCAACAAAGGATTTTATGTATTGCGGGATATTGCATCTGGGAGAGATTTGAAGGCATTCCTCGGTGTTATAGCTGTCTTGTGGATTCTATCGGTGGTTGGGAAATGGTTCAACTTTCTGACCTTATTCTACATACTTTTTGTGTTGCTGCACACACTGCCCGTGATTTATGAGAAATACGATGACCAGATTGATGCCTTTGGCGAGAAGGCGTGGATCGAAATAAAGAAGCAGTACGCAGTGTTTGATGCCAAGGTTTTGAGTAAAATCCCCAAGGGTCCTGTGAAGGAGAAGAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

265

Amino Acids

29.94

Weight (kDa)

9.42

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	287
AccII	CGCG	2 cut(s)	154, 156
AciI	CCGC	4 cut(s)	5, 222, 225, 514
AclWI	GGATC	1 cut(s)	713
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	1 cut(s)	725
AgsI	TTSAA	4 cut(s)	440, 488, 541, 601
AhdI	GACNNNNNGTC	1 cut(s)	97
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	466, 563
AluI	AGCT	2 cut(s)	466, 563
AlwI	GGATC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	110, 637
ApoI	RAATTY	1 cut(s)	441
Asp700I	GAANNNNTTC	2 cut(s)	545, 596
AspLEI	GCGC	2 cut(s)	154, 156
AspS9I	GGNCC	2 cut(s)	387, 767
AvaII	GGWCC	2 cut(s)	387, 767
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	3 cut(s)	141, 235, 458
BbvI	GCAGC	2 cut(s)	97, 624
BccI	CCATC	2 cut(s)	34, 336
BceAI	ACGGC	2 cut(s)	42, 130
BfuAI	ACCTGC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	4 cut(s)	111, 223, 226, 638
BlsI	GCNGC	4 cut(s)	112, 224, 227, 639
Bme18I	GGWCC	2 cut(s)	387, 767
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	387, 767
BmiI	GGNNCC	3 cut(s)	9, 289, 768
BmsI	GCATC	4 cut(s)	404, 533, 673, 727
BpiI	GAAGAC	3 cut(s)	141, 235, 458
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	24, 126, 550, 741, 762
Bse118I	RCCGGY	1 cut(s)	284
BseDI	CCNNGG	5 cut(s)	24, 126, 550, 741, 762
BseGI	GGATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	470
BsePI	GCGCGC	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	97, 624
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	154, 156
BshNI	GGYRCC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	48, 705
BspACI	CCGC	4 cut(s)	5, 222, 225, 514
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	2 cut(s)	154, 156
BspLI	GGNNCC	3 cut(s)	9, 289, 768
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	5 cut(s)	24, 126, 550, 741, 762
BssHII	GCGCGC	1 cut(s)	152
BssMI	GATC	2 cut(s)	48, 705
BssT1I	CCWWGG	3 cut(s)	126, 741, 762
Bst4CI	ACNGT	2 cut(s)	295, 457
Bst6I	CTCTTC	2 cut(s)	70, 191
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	108, 154, 282, 468
BstDEI	CTNAG	1 cut(s)	479
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	2 cut(s)	154, 156
BstHHI	GCGC	2 cut(s)	154, 156
BstKTI	GATC	2 cut(s)	51, 708
BstMBI	GATC	2 cut(s)	48, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 646
BstUI	CGCG	2 cut(s)	154, 156
BstV1I	GCAGC	2 cut(s)	97, 624
BstV2I	GAAGAC	3 cut(s)	141, 235, 458
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	2 cut(s)	644, 735
BtsIMutI	CAGTG	3 cut(s)	291, 644, 735
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	108, 154, 282, 468
CfoI	GCGC	2 cut(s)	154, 156
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	387, 767
Csp6I	GTAC	1 cut(s)	724
CviJI	RGCY	9 cut(s)	10, 29, 125, 145, 184, 202, 371, 466, 563
CviKI_1	RGCY	9 cut(s)	10, 29, 125, 145, 184, 202, 371, 466, 563
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	2 cut(s)	50, 707
DpnII	GATC	2 cut(s)	48, 705
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	70, 191
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	2 cut(s)	70, 191
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	126, 741, 762
Eco47I	GGWCC	2 cut(s)	387, 767
EcoO109I	RGGNCCY	1 cut(s)	767
EcoT14I	CCWWGG	3 cut(s)	126, 741, 762
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	3 cut(s)	126, 741, 762
FaiI	YATR	6 cut(s)	250, 301, 507, 560, 623, 660
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	111, 223, 226, 638
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	4 cut(s)	111, 223, 226, 638
GlaI	GCGC	2 cut(s)	153, 155
GluI	GCNGC	4 cut(s)	111, 223, 226, 638
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	2 cut(s)	154, 156
Hin6I	GCGC	2 cut(s)	152, 154
HinP1I	GCGC	2 cut(s)	152, 154
HinfI	GANTC	4 cut(s)	32, 80, 158, 574
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	79, 85, 480, 609
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	6 cut(s)	73, 76, 79, 89, 92, 151
HpyAV	CCTTC	4 cut(s)	535, 691, 769, 781
HpyCH4III	ACNGT	2 cut(s)	295, 457
HpyCH4V	TGCA	4 cut(s)	272, 395, 524, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 646
HpyF3I	CTNAG	1 cut(s)	479
HspAI	GCGC	2 cut(s)	152, 154
Kzo9I	GATC	2 cut(s)	48, 705
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	2 cut(s)	97, 624
LweI	GCATC	4 cut(s)	404, 533, 673, 727
MalI	GATC	2 cut(s)	50, 707
MboI	GATC	2 cut(s)	48, 705
MboII	GAAGA	6 cut(s)	57, 146, 178, 235, 463, 793
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	2 cut(s)	441, 483
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	3 cut(s)	57, 108, 423
MnlI	CCTC	3 cut(s)	246, 481, 560
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	2 cut(s)	545, 596
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	545
MvnI	CGCG	2 cut(s)	154, 156
MwoI	GCNNNNNNNGC	2 cut(s)	151, 646
NdeII	GATC	2 cut(s)	48, 705
NlaIV	GGNNCC	3 cut(s)	9, 289, 768
NsiI	ATGCAT	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	341
PauI	GCGCGC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	2 cut(s)	545, 596
PfeI	GAWTC	3 cut(s)	32, 158, 574
PkrI	GCNGC	4 cut(s)	112, 224, 227, 639
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	9, 289, 768
PspPI	GGNCC	2 cut(s)	387, 767
PspPPI	RGGWCCY	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	48
PteI	GCGCGC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	4 cut(s)	111, 223, 226, 638
Sau3AI	GATC	2 cut(s)	48, 705
Sau96I	GGNCC	2 cut(s)	387, 767
SchI	GAGTC	1 cut(s)	74
SetI	ASST	9 cut(s)	132, 216, 235, 384, 438, 468, 565, 614, 747
SfaNI	GCATC	4 cut(s)	404, 533, 673, 727
SinI	GGWCC	2 cut(s)	387, 767
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	441, 483
SsiI	CCGC	4 cut(s)	5, 222, 225, 514
StyI	CCWWGG	3 cut(s)	126, 741, 762
TaaI	ACNGT	2 cut(s)	295, 457
TaqI	TCGA	2 cut(s)	321, 708
TasI	AATT	2 cut(s)	441, 483
TauI	GCSGC	2 cut(s)	225, 228
TfiI	GAWTC	3 cut(s)	32, 158, 574
TscAI	CASTG	3 cut(s)	298, 651, 735
TseI	GCWGC	2 cut(s)	110, 637
TspGWI	ACGGA	2 cut(s)	106, 151
TspRI	CASTG	3 cut(s)	298, 651, 735
VpaK11BI	GGWCC	2 cut(s)	387, 767
XapI	RAATTY	1 cut(s)	441
XmnI	GAANNNNTTC	2 cut(s)	545, 596
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.