Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411697.1

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Reverse (-)

159 .. 1128

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggtgaccggaattaacaagtttgtggaattgttttccatttctgctgatgtcctcctatggagggacaagaaagtatctggaagtgttcttggtggagccactgtactatggattttctttgagttgcttgaataccatttgataactctggtctgccatatgttgatactttctctgggcgttttcttcctgtggtccaatgtgtcctcctttatcaacaaggctccaccagaaatcccaaaagttcaaattccggagaagtgtgtccttgatcttgcctctgcactgaggattgaactcaacaaagggttccatgttctgcgggaaattgcatctgggagagatttgaggacattcctcattgtaatagttgtcttgtggattttgtcagtgattggcaaatggttcaacttcctgaccttattctacttatcctttgtcttgctgcacacggtgccagtgatctatgagaaacatgatgtccagattgatgcttttgctgagaaggcatggattgagattaagaagcagtatgcagtgtttgatgcgaatgttttgagtaagatacccaagggtccagtgaaagagaagaagaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

201

Amino Acids

22.96

Weight (kDa)

9.0

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	134, 251, 299, 412
Aor13HI	TCCGGA	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	198, 578
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	198, 578
BanI	GGYRCC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	604
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	198, 578
BmgT120I	GGNCC	2 cut(s)	198, 578
BmiI	GGNNCC	5 cut(s)	100, 228, 314, 459, 579
BmsI	GCATC	3 cut(s)	344, 484, 538
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	2 cut(s)	8, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	461, 581
BseAI	TCCGGA	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	281, 495
BseNI	ACTGG	2 cut(s)	461, 581
BseXI	GCAGC	1 cut(s)	435
BsgI	GTGCAG	2 cut(s)	270, 434
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	9, 257
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	274, 465
BspACI	CCGC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	282, 496
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	5 cut(s)	100, 228, 314, 459, 579
BspT107I	GGYRCC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	461, 581
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	274, 465
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	106, 457
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	290, 504
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	2 cut(s)	277, 468
BstMBI	GATC	2 cut(s)	274, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 509
BstPI	GGTNACC	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	6 cut(s)	102, 287, 399, 468, 546, 588
Cfr13I	GGNCC	2 cut(s)	198, 578
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	3 cut(s)	317, 479, 513
CviJI	RGCY	2 cut(s)	101, 227
CviKI_1	RGCY	2 cut(s)	101, 227
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	290, 504
DpnI	GATC	2 cut(s)	276, 467
DpnII	GATC	2 cut(s)	274, 465
DraIII	CACNNNGTG	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	198, 578
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	3 cut(s)	320, 482, 516
FaiI	YATR	9 cut(s)	61, 112, 162, 164, 318, 471, 480, 514, 537
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	316, 478, 512
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	604
GluI	GCNGC	1 cut(s)	449
HapII	CCGG	2 cut(s)	9, 257
Hin1II	CATG	3 cut(s)	320, 482, 516
HpaII	CCGG	2 cut(s)	9, 257
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	81, 257, 418, 487
HpyAV	CCTTC	2 cut(s)	502, 592
HpyCH4III	ACNGT	2 cut(s)	106, 457
HpyCH4V	TGCA	4 cut(s)	287, 335, 451, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 509
HpyF3I	CTNAG	2 cut(s)	290, 504
Hsp92II	CATG	3 cut(s)	320, 482, 516
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	274, 465
LmnI	GCTCC	2 cut(s)	98, 232
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	3 cut(s)	344, 484, 538
MaeI	CTAG	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	276, 467
MboI	GATC	2 cut(s)	274, 465
MboII	GAAGA	2 cut(s)	181, 604
MluCI	AATT	4 cut(s)	12, 29, 252, 330
MnlI	CCTC	7 cut(s)	57, 65, 220, 285, 292, 345, 371
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	2 cut(s)	15, 525
MspI	CCGG	2 cut(s)	9, 257
MwoI	GCNNNNNNNGC	2 cut(s)	457, 509
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	2 cut(s)	274, 465
NlaIII	CATG	3 cut(s)	320, 482, 516
NlaIV	GGNNCC	5 cut(s)	100, 228, 314, 459, 579
NmuCI	GTSAC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	5 cut(s)	100, 228, 314, 459, 579
PspPI	GGNCC	2 cut(s)	198, 578
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	15, 525
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	2 cut(s)	274, 465
Sau96I	GGNCC	2 cut(s)	198, 578
SetI	ASST	1 cut(s)	425
SfaNI	GCATC	3 cut(s)	344, 484, 538
SinI	GGWCC	2 cut(s)	198, 578
Sse9I	AATT	4 cut(s)	12, 29, 252, 330
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	106, 457
TasI	AATT	4 cut(s)	12, 29, 252, 330
TatI	WGTACW	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	15, 525
Tru9I	TTAA	2 cut(s)	15, 525
TscAI	CASTG	6 cut(s)	109, 294, 399, 468, 546, 588
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	4
TspRI	CASTG	6 cut(s)	109, 294, 399, 468, 546, 588
VpaK11BI	GGWCC	2 cut(s)	198, 578
XapI	RAATTY	1 cut(s)	252
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.