Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007019

Physical Location & Seq

Genomic Coordinates Forward (+)

25851137 .. 25852910

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGAGCCAGAACCAACTACCGCGTCGCTGATGGACAAGAGCTACAGCCACCACTCGTCGTCTTCGTCCGACTCCGACGACGACAAGAAGGCCAAGCACGCTGCCGCCGTCAAAACCAAGGTTGAAGACAAGCCGTCGGCGCACGATTCCGTTAAATCCAAGATTTTCAGGCTCTTCGGGAGAGAAAAGCCCGTTCACAAGGTCTTGGGCGGCGGCAAACCTGCTGATGTTCTCCTATGGAGAAACAAGAAAATATCTGCAAGTGTGCTCGGCGGTGCCACTGTTTTATGGGTTTTCTTCGAGTTGCTCGAATACCACTTAATCACTCTGGTGTGCCATTTATTGATACTTTCTCTGGCGGTCTTTTTCCTGTGGTCCTATGCATCCACCTTTATCAACAAGTCGCCACCACAAATCCCAAAAGTTCAAATTCCTGAGAAGACTGTCCTTGAACTTGCCTCTGCTCTGAGAATTGAAATCAACAAAGGATTTTATGTTTTGCGGGATATTGCATCTGGAAGAGATTTGAAGACATTCCTTGGTGTTATAGCCGTCTTGTGGATTTTGTCGGTGGTTGGGAAATGGTTCAACTTTCTGACCCTATTCTACATAATTTTTGTGTTGCTGCACACTCTGCCGGTGATTTATGAGAAATACGACGACCAGATTGATGCCTTTGGTGAGAAGGCATGGATCGAAATTAAGAAGCAGTATGCAGTGTTTGATGCCAAGGTTTTGAGTAAAATCCCCAAGGGTCCAGTGAAGGAGAAGAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0008150 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

262

Amino Acids

29.42

Weight (kDa)

9.36

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64090 AT1G64090 AT4G11220 AT4G23630 AT4G23630 AT5G41600
fragaria_vesca	FvH4_7g30590 FvH4_7g30590 FvH4_7g30590
malus_domestica	MD01G1211100.v1.1 MD07G1281900.v1.1
prunus_persica	Prupe.2G303500_v2.0.a1
pyrus_communis	pycom01g22160 pycom07g25580
rosa_chinensis	RchiOBHm_Chr1g0379491
rosa_laevigata	RLG00000026398
rosa_multiflora	Rmu_co8411697.1_g000001 Rmu_sc0006761.1_g000018 Rmu_sc0031430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280160
rosa_rugosa	Rorug01G0412200
rosa_samantha	Rh1AG434700 Rh1BG392500 Rh1DG423300
rosa_wichuraiana	Rw1G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	278
AccII	CGCG	1 cut(s)	26
AciI	CCGC	8 cut(s)	5, 24, 108, 213, 216, 276, 362, 505
AclWI	GGATC	1 cut(s)	704
AcsI	RAATTY	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	6 cut(s)	128, 431, 455, 479, 532, 592
AhdI	GACNNNNNGTC	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	104, 628
ApoI	RAATTY	1 cut(s)	432
Asp700I	GAANNNNTTC	2 cut(s)	536, 587
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	378, 758
AsuHPI	GGTGA	2 cut(s)	655, 695
AvaII	GGWCC	2 cut(s)	378, 758
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	4 cut(s)	57, 135, 449, 539
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	91, 615
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	3 cut(s)	95, 121, 539
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	5 cut(s)	105, 108, 214, 217, 629
BlsI	GCNGC	5 cut(s)	106, 109, 215, 218, 630
Bme18I	GGWCC	2 cut(s)	378, 758
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	378, 758
BmiI	GGNNCC	3 cut(s)	9, 280, 759
BmsI	GCATC	4 cut(s)	395, 524, 664, 718
BpiI	GAAGAC	4 cut(s)	57, 135, 449, 539
BsaJI	CCNNGG	4 cut(s)	120, 541, 732, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	761
BseDI	CCNNGG	4 cut(s)	120, 541, 732, 753
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	429, 461
BseNI	ACTGG	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	91, 615
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	561
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	696
BspACI	CCGC	8 cut(s)	5, 24, 108, 213, 216, 276, 362, 505
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	430, 462
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	9, 280, 759
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	761
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	4 cut(s)	120, 541, 732, 753
BssMI	GATC	1 cut(s)	696
BssT1I	CCWWGG	4 cut(s)	120, 541, 732, 753
Bst4CI	ACNGT	2 cut(s)	286, 448
Bst6I	CTCTTC	2 cut(s)	182, 517
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	438, 470
BstF5I	GGATG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	699
BstMBI	GATC	1 cut(s)	696
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 142, 637
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	91, 615
BstV2I	GAAGAC	4 cut(s)	57, 135, 449, 539
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	282, 726, 768
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	2 cut(s)	378, 758
CseI	GACGC	1 cut(s)	15
CviAII	CATG	1 cut(s)	693
CviJI	RGCY	8 cut(s)	10, 45, 51, 95, 136, 175, 193, 554
CviKI_1	RGCY	8 cut(s)	10, 45, 51, 95, 136, 175, 193, 554
DdeI	CTNAG	2 cut(s)	438, 470
DpnI	GATC	1 cut(s)	698
DpnII	GATC	1 cut(s)	696
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	182, 517
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	2 cut(s)	182, 517
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	120, 541, 732, 753
Eco47I	GGWCC	2 cut(s)	378, 758
EcoT14I	CCWWGG	4 cut(s)	120, 541, 732, 753
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	4 cut(s)	120, 541, 732, 753
FaeI	CATG	1 cut(s)	696
FaiI	YATR	9 cut(s)	241, 292, 384, 498, 551, 614, 651, 694, 717
FatI	CATG	1 cut(s)	692
FauI	CCCGC	1 cut(s)	498
Fnu4HI	GCNGC	5 cut(s)	105, 108, 214, 217, 629
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	5 cut(s)	105, 108, 214, 217, 629
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	105, 108, 214, 217, 629
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	641
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	696
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	2 cut(s)	74, 149
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	2 cut(s)	655, 695
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	73, 79, 471, 600
Hpy188III	TCNNGA	3 cut(s)	181, 437, 519
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	6 cut(s)	31, 64, 83, 86, 142, 665
HpyAV	CCTTC	4 cut(s)	85, 682, 760, 772
HpyCH4III	ACNGT	2 cut(s)	286, 448
HpyCH4V	TGCA	5 cut(s)	263, 386, 515, 631, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 142, 637
HpyF3I	CTNAG	2 cut(s)	438, 470
Hsp92II	CATG	1 cut(s)	696
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	696
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	2 cut(s)	91, 615
LweI	GCATC	4 cut(s)	395, 524, 664, 718
MalI	GATC	1 cut(s)	698
MboI	GATC	1 cut(s)	696
MboII	GAAGA	8 cut(s)	57, 140, 169, 292, 454, 534, 544, 784
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	432, 474, 615, 702
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	96, 102
MnlI	CCTC	1 cut(s)	472
Mph1103I	ATGCAT	1 cut(s)	388
MroXI	GAANNNNTTC	2 cut(s)	536, 587
MseI	TTAA	3 cut(s)	156, 323, 705
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	101, 142, 637
NdeII	GATC	1 cut(s)	696
NlaIII	CATG	1 cut(s)	696
NlaIV	GGNNCC	3 cut(s)	9, 280, 759
NmeAIII	GCCGAG	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 108, 309
PdmI	GAANNNNTTC	2 cut(s)	536, 587
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	5 cut(s)	106, 109, 215, 218, 630
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	9, 280, 759
PspPI	GGNCC	2 cut(s)	378, 758
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	156, 323, 705
SatI	GCNGC	5 cut(s)	105, 108, 214, 217, 629
Sau3AI	GATC	1 cut(s)	696
Sau96I	GGNCC	2 cut(s)	378, 758
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	47, 126, 207, 226, 395, 738
SfaNI	GCATC	4 cut(s)	395, 524, 664, 718
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	378, 758
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	4 cut(s)	432, 474, 615, 702
SsiI	CCGC	8 cut(s)	5, 24, 108, 213, 216, 276, 362, 505
StyI	CCWWGG	4 cut(s)	120, 541, 732, 753
TaaI	ACNGT	2 cut(s)	286, 448
TaqI	TCGA	3 cut(s)	303, 312, 699
TasI	AATT	4 cut(s)	432, 474, 615, 702
TauI	GCSGC	3 cut(s)	110, 216, 219
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	156, 323, 705
Tru9I	TTAA	3 cut(s)	156, 323, 705
TscAI	CASTG	3 cut(s)	289, 726, 768
TseI	GCWGC	2 cut(s)	104, 628
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	3 cut(s)	289, 726, 768
VpaK11BI	GGWCC	2 cut(s)	378, 758
XapI	RAATTY	1 cut(s)	432
XmnI	GAANNNNTTC	2 cut(s)	536, 587
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.