AT1G64380

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015077
Physical Location & Seq
Reverse (-)
23890570 .. 23892193
1624 bp
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UTR
Exon/CDS
Intron
AT1G64380.1

Sequence Viewer

Length: 1008 bp
ATGGAAGAAAGCAATGATATTTTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATATTAGCAGGAGGACCAAACACACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTAGAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTCCTCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATCTCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGATCATCATCAAACTTCCGAGCTAATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGGAGGGTGACGAAAAAGAAGAAACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGGGTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACACGGCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCTCGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTACTCGGACTCGGAGATTCCTCTAAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCAGAGAGTCAGAAAAGAGAGAGCAAAAAAGAGCGTAAAAGTGAGCAAAAACTCGTCGGCCACGGCGGATTCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTACTGCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAATAGTTCTCCGGTATCAGTTTCGGTCCCTAGTGAAGTACCGGCGACGGCGGAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCGTTCGATCCAGAGCTGATTTGGGAAGTTCTTGCCAATTAA

Protein Analysis

335

Amino Acids

36.56

Weight (kDa)

7.72

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 135 - 184 7.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 531
AclWI GGATC 2 cut(s) 652, 968
AcoI YGGCCR 2 cut(s) 336, 729
AcuI CTGAAG 2 cut(s) 230, 795
AfaI GTAC 3 cut(s) 296, 490, 897
AfiI CCNNNNNNNGG 3 cut(s) 194, 334, 651
AgsI TTSAA 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 7 cut(s) 193, 319, 544, 598, 625, 632, 982
AluI AGCT 7 cut(s) 193, 319, 544, 598, 625, 632, 982
Alw26I GTCTC 5 cut(s) 75, 348, 418, 569, 783
AlwI GGATC 2 cut(s) 652, 968
Ama87I CYCGRG 2 cut(s) 194, 589
AoxI GGCC 2 cut(s) 336, 729
ApeKI GCWGC 2 cut(s) 190, 365
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 92, 198, 883
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 397, 796, 825
AvaI CYCGRG 2 cut(s) 194, 589
AvaII GGWCC 3 cut(s) 92, 198, 883
BarI GAAGNNNNNNTAC 2 cut(s) 389, 421
BbvI GCAGC 2 cut(s) 202, 352
BccI CCATC 3 cut(s) 919, 935, 973
BceAI ACGGC 4 cut(s) 516, 629, 750, 921
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 5 cut(s) 75, 348, 418, 569, 783
BfaI CTAG 1 cut(s) 888
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 3 cut(s) 92, 198, 883
BmeT110I CYCGRG 2 cut(s) 194, 589
BmgT120I GGNCC 3 cut(s) 92, 198, 883
BmiI GGNNCC 2 cut(s) 199, 885
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 71, 951
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 547, 732
BsaWI WCCGGW 2 cut(s) 781, 868
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 334, 651
Bse118I RCCGGY 1 cut(s) 898
Bse3DI GCAATG 2 cut(s) 19, 927
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 547, 732
BseGI GGATG 2 cut(s) 271, 966
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 194, 334, 651
BseMI GCAATG 2 cut(s) 19, 927
BseMII CTCAG 2 cut(s) 63, 86
BseRI GAGGAG 4 cut(s) 124, 258, 267, 426
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 2 cut(s) 202, 352
BseYI CCCAGC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 531
Bsh1285I CGRYCG 2 cut(s) 339, 529
BshFI GGCC 2 cut(s) 338, 731
BsiEI CGRYCG 2 cut(s) 339, 529
BsiHKCI CYCGRG 2 cut(s) 194, 589
BsiSI CCGG 5 cut(s) 339, 761, 782, 869, 899
BsiWI CGTACG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 3 cut(s) 194, 334, 651
BsmAI GTCTC 5 cut(s) 75, 348, 418, 569, 783
BsmBI CGTCTC 2 cut(s) 569, 783
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 2 cut(s) 338, 731
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 2 cut(s) 194, 589
Bsp143I GATC 5 cut(s) 75, 298, 526, 657, 973
BspANI GGCC 2 cut(s) 338, 731
BspCNI CTCAG 2 cut(s) 62, 85
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 199, 885
BspPI GGATC 2 cut(s) 652, 968
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 19, 927
BsrFI RCCGGY 1 cut(s) 898
BssAI RCCGGY 1 cut(s) 898
BssECI CCNNGG 2 cut(s) 547, 732
BssMI GATC 5 cut(s) 75, 298, 526, 657, 973
Bst4CI ACNGT 1 cut(s) 854
Bst6I CTCTTC 1 cut(s) 909
BstDEI CTNAG 3 cut(s) 49, 72, 621
BstDSI CCRYGG 2 cut(s) 547, 732
BstF5I GGATG 2 cut(s) 271, 966
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 78, 301, 529, 660, 976
BstMAI GTCTC 5 cut(s) 75, 348, 418, 569, 783
BstMBI GATC 5 cut(s) 75, 298, 526, 657, 973
BstMCI CGRYCG 2 cut(s) 339, 529
BstMWI GCNNNNNNNGC 7 cut(s) 187, 359, 362, 371, 374, 509, 518
BstSCI CCNGG 1 cut(s) 338
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 202, 352
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
BstZI CGGCCG 1 cut(s) 336
BsuRI GGCC 2 cut(s) 338, 731
BtgI CCRYGG 2 cut(s) 547, 732
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 2 cut(s) 271, 966
BtsIMutI CAGTG 2 cut(s) 859, 936
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 898
Cfr13I GGNCC 3 cut(s) 92, 198, 883
Csp6I GTAC 3 cut(s) 295, 489, 896
CviQI GTAC 3 cut(s) 295, 489, 896
DdeI CTNAG 3 cut(s) 49, 72, 621
DpnI GATC 5 cut(s) 77, 300, 528, 659, 975
DpnII GATC 5 cut(s) 75, 298, 526, 657, 973
EaeI YGGCCR 2 cut(s) 336, 729
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
EciI GGCGGA 6 cut(s) 136, 168, 203, 518, 752, 923
EclXI CGGCCG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 92, 198, 883
Eco52I CGGCCG 1 cut(s) 336
Eco57I CTGAAG 2 cut(s) 230, 795
Eco88I CYCGRG 2 cut(s) 194, 589
EcoO109I RGGNCCY 1 cut(s) 198
EcoRV GATATC 1 cut(s) 226
Esp3I CGTCTC 2 cut(s) 569, 783
FaiI YATR 3 cut(s) 80, 540, 839
FaqI GGGAC 1 cut(s) 869
FblI GTMKAC 1 cut(s) 648
FokI GGATG 2 cut(s) 258, 973
FspBI CTAG 1 cut(s) 888
GlaI GCGC 1 cut(s) 532
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 338, 731
HapII CCGG 5 cut(s) 339, 761, 782, 869, 899
HhaI GCGC 1 cut(s) 533
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 7 cut(s) 107, 143, 606, 614, 678, 740, 766
HpaII CCGG 5 cut(s) 339, 761, 782, 869, 899
HphI GGTGA 3 cut(s) 397, 796, 825
Hpy166II GTNNAC 2 cut(s) 649, 934
Hpy188III TCNNGA 3 cut(s) 232, 637, 977
Hpy8I GTNNAC 2 cut(s) 649, 934
Hpy99I CGWCG 5 cut(s) 650, 653, 730, 778, 907
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4IV ACGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 359, 362, 371, 374, 509, 518
HpyF3I CTNAG 3 cut(s) 49, 72, 621
HpySE526I ACGT 1 cut(s) 293
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 5 cut(s) 75, 298, 526, 657, 973
LmnI GCTCC 2 cut(s) 330, 549
Lsp1109I GCAGC 2 cut(s) 202, 352
LweI GCATC 2 cut(s) 71, 951
MaeI CTAG 1 cut(s) 888
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 4 cut(s) 385, 784, 805, 848
MalI GATC 5 cut(s) 77, 300, 528, 659, 975
MboI GATC 5 cut(s) 75, 298, 526, 657, 973
MboII GAAGA 6 cut(s) 17, 106, 409, 667, 735, 926
MflI RGATCY 1 cut(s) 657
MluCI AATT 3 cut(s) 31, 568, 1003
MlyI GAGTC 3 cut(s) 101, 600, 687
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 5 cut(s) 339, 761, 782, 869, 899
MspR9I CCNGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 7 cut(s) 187, 359, 362, 371, 374, 509, 518
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 75, 298, 526, 657, 973
NlaIV GGNNCC 2 cut(s) 199, 885
NmuCI GTSAC 2 cut(s) 385, 784
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 4 cut(s) 143, 614, 740, 766
Pfl23II CGTACG 1 cut(s) 294
Ple19I CGATCG 1 cut(s) 529
PleI GAGTC 3 cut(s) 101, 600, 686
PpsI GAGTC 3 cut(s) 101, 600, 686
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 377
PspLI CGTACG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 199, 885
PspPI GGNCC 3 cut(s) 92, 198, 883
PspPPI RGGWCCY 1 cut(s) 198
PsuI RGATCY 1 cut(s) 657
PvuI CGATCG 1 cut(s) 529
RsaI GTAC 3 cut(s) 296, 490, 897
RsaNI GTAC 3 cut(s) 295, 489, 896
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 1 cut(s) 1006
Sau3AI GATC 5 cut(s) 75, 298, 526, 657, 973
Sau96I GGNCC 3 cut(s) 92, 198, 883
SchI GAGTC 3 cut(s) 101, 600, 687
ScrFI CCNGG 1 cut(s) 340
SfaNI GCATC 2 cut(s) 71, 951
SgrDI CGTCGACG 1 cut(s) 647
SinI GGWCC 3 cut(s) 92, 198, 883
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 31, 568, 1003
SspMI CTAG 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 854
TaiI ACGT 1 cut(s) 296
TaqI TCGA 4 cut(s) 105, 231, 648, 972
TaqII GACCGA 1 cut(s) 871
TasI AATT 3 cut(s) 31, 568, 1003
TfiI GAWTC 4 cut(s) 143, 614, 740, 766
Tru1I TTAA 1 cut(s) 1006
Tru9I TTAA 1 cut(s) 1006
TscAI CASTG 2 cut(s) 859, 943
TseFI GTSAC 2 cut(s) 385, 784
TseI GCWGC 2 cut(s) 190, 365
Tsp45I GTSAC 2 cut(s) 385, 784
TspGWI ACGGA 3 cut(s) 127, 193, 536
TspRI CASTG 2 cut(s) 859, 943
VpaK11BI GGWCC 3 cut(s) 92, 198, 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.