MD06G1105500.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015077
Physical Location & Seq
Reverse (-)
24404574 .. 24405557
984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1105500.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGACACAATGCAAGAAAACAATCTTGCTTTTGGGTTCACAGACGCCATTGACATCCGATCTTCTCTCTCAAGTATCATACTAACAAGCTCCACAAACACCCTGGACTCGATTTTTTCTCACTGCCCACAAACACTCACCACCGCCGTAACAACCACCAGCAGCGGCAGTTCTGTATCCGAGCCGCTGGGCTCATCAGTTTACCTCCGCCAGAGAGACCTTCTCCAGAAGTTCTGCGATGAAAGCCGAGCAAACGCAAACGCCACGGTTTCGCGCTCTTTTGCGACGAACCCATTGCAGAGCTCGGCTTGTTCTTCAACCACTTACATGGCTCCATACAAGAAGAAGCTCTATAGGGGAGTCCGGCAGAGGCATTGGGGCAAATGGGTAGCCGAGATCAGACTCCCTCAGAACAGAATGAGGGTCTGGCTCGGCACCTACGACACCGCGGAAGCCGCCGCCTATGCGTACGACAGGGCGGCCTATAAGCTCCGCGGTGAGTACGCGAGGTTGAACTTCCCAAATCTTAAGGACCCGAGCAAGTTGGGTTTCGGCGACGGTTCTAGACTGAACGCCGTGAAAAACTCCGTGGATGCGAAAATCCAAGCGATTTGTCAGAAGGTGAAGAGGGACAGAGCCAAGAAGAATGTGAAGAAGAGCAGTTCTTCAGTTGGTGGCGGTGATGGGAGTTTCAGTGAGAATGGGAAGGTTGTGAAGGTGGAATCCTCTCCGTCGTCCTCGTCGTCTCCTTTGGTCTTTGGCGACGGTTTTGGCCACGAAATGGCGTCATTAACCCCGACGCCGACCGTGTCTGAGGACGGTGTTTGGAGGAGTGAGAAGAACTCACCGCCGTCTGTTTCAACAGAGTTTCAAATGGGGATGGCGGAGTTGGGAATGGGAGAAGAGTCGGAATTTGAAGGGTGTTCACTTGCAGGAATGCCTTCATTTGATCCTGAGTTGATTTGGGAAGTTCTTGCTAATTAG

Protein Analysis

328

Amino Acids

35.58

Weight (kDa)

8.18

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 117 - 166 7.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 781
AccII CGCG 4 cut(s) 274, 449, 495, 506
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 3 cut(s) 45, 785, 800
AfaI GTAC 2 cut(s) 470, 503
AfiI CCNNNNNNNGG 1 cut(s) 781
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 318, 514, 861, 872, 917
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 4 cut(s) 90, 303, 349, 490
AluI AGCT 4 cut(s) 90, 303, 349, 490
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 210, 750
AlwI GGATC 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 2 cut(s) 480, 772
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 911
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 5 cut(s) 130, 509, 634, 692, 837
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 2 cut(s) 194, 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 174
BccI CCATC 2 cut(s) 677, 874
BceAI ACGGC 3 cut(s) 131, 560, 835
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 210, 750
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 352
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
BlsI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 3 cut(s) 333, 436, 534
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 583
BplI GAGNNNNNCTC 4 cut(s) 207, 239, 827, 859
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 55
BsaHI GRCGYC 3 cut(s) 45, 785, 800
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 102, 264, 447, 493, 588
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 102, 264, 447, 493, 588
BseGI GGATG 3 cut(s) 54, 598, 885
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 422, 804, 945
BseRI GAGGAG 1 cut(s) 844
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 4 cut(s) 274, 449, 495, 506
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 2 cut(s) 482, 774
BshNI GGYRCC 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 1 cut(s) 364
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 2 cut(s) 210, 750
BsmBI CGTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 942
BsnI GGCC 2 cut(s) 482, 774
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 194, 305
Bsp143I GATC 3 cut(s) 59, 396, 949
BspANI GGCC 2 cut(s) 482, 774
BspCNI CTCAG 3 cut(s) 421, 805, 946
BspFNI CGCG 4 cut(s) 274, 449, 495, 506
BspLI GGNNCC 3 cut(s) 333, 436, 534
BspPI GGATC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 102, 264, 447, 493, 588
BssMI GATC 3 cut(s) 59, 396, 949
BssNI GRCGYC 3 cut(s) 45, 785, 800
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 5 cut(s) 268, 560, 767, 808, 821
Bst6I CTCTTC 3 cut(s) 620, 650, 897
BstACI GRCGYC 3 cut(s) 45, 785, 800
BstAFI CTTAAG 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 408, 813, 954
BstDSI CCRYGG 4 cut(s) 264, 447, 493, 588
BstF5I GGATG 3 cut(s) 54, 598, 885
BstFNI CGCG 4 cut(s) 274, 449, 495, 506
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 3 cut(s) 62, 399, 952
BstMAI GTCTC 2 cut(s) 210, 750
BstMBI GATC 3 cut(s) 59, 396, 949
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 3 cut(s) 243, 455, 464
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 4 cut(s) 274, 449, 495, 506
BstV1I GCAGC 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 328
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 482, 774
BtgI CCRYGG 4 cut(s) 264, 447, 493, 588
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 54, 598, 885
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 700
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 532
Cfr42I CCGCGG 2 cut(s) 450, 496
CseI GACGC 3 cut(s) 53, 774, 808
Csp6I GTAC 2 cut(s) 469, 502
CviAII CATG 1 cut(s) 328
CviQI GTAC 2 cut(s) 469, 502
DdeI CTNAG 3 cut(s) 408, 813, 954
DpnI GATC 3 cut(s) 61, 398, 951
DpnII GATC 3 cut(s) 59, 396, 949
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 620, 650, 897
EarI CTCTTC 3 cut(s) 620, 650, 897
EciI GGCGGA 2 cut(s) 197, 899
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 194, 305
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 194, 305
Esp3I CGTCTC 1 cut(s) 750
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 80, 329, 337, 354, 465, 486
FaqI GGGAC 1 cut(s) 644
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FokI GGATG 3 cut(s) 41, 605, 892
FriOI GRGCYC 2 cut(s) 194, 305
Fsp4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 275
GluI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 2 cut(s) 482, 774
HapII CCGG 1 cut(s) 364
HgaI GACGC 3 cut(s) 53, 774, 808
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 3 cut(s) 45, 785, 800
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 5 cut(s) 107, 360, 402, 722, 905
HpaII CCGG 1 cut(s) 364
HphI GGTGA 5 cut(s) 130, 509, 634, 692, 837
Hpy166II GTNNAC 3 cut(s) 39, 202, 926
Hpy188I TCNGA 7 cut(s) 59, 181, 401, 411, 618, 814, 910
Hpy188III TCNNGA 3 cut(s) 226, 564, 953
Hpy8I GTNNAC 3 cut(s) 39, 202, 926
Hpy99I CGWCG 6 cut(s) 289, 560, 736, 745, 767, 802
HpyAV CCTTC 6 cut(s) 230, 613, 700, 709, 911, 951
HpyCH4III ACNGT 5 cut(s) 268, 560, 767, 808, 821
HpyCH4V TGCA 3 cut(s) 13, 298, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 455, 464
HpyF3I CTNAG 3 cut(s) 408, 813, 954
Hsp92I GRCGYC 3 cut(s) 45, 785, 800
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 274
KspI CCGCGG 2 cut(s) 450, 496
Kzo9I GATC 3 cut(s) 59, 396, 949
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 3 cut(s) 95, 337, 495
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 61, 398, 951
MboI GATC 3 cut(s) 59, 396, 949
MhlI GDGCHC 2 cut(s) 194, 305
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 2 cut(s) 911, 979
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 4 cut(s) 101, 369, 396, 914
MmeI TCCRAC 1 cut(s) 888
Mox20I TGGCCA 1 cut(s) 774
MroXI GAANNNNTTC 1 cut(s) 940
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 528, 791
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 4 cut(s) 165, 187, 449, 495
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 942
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 4 cut(s) 274, 449, 495, 506
MwoI GCNNNNNNNGC 3 cut(s) 243, 455, 464
NdeII GATC 3 cut(s) 59, 396, 949
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 3 cut(s) 333, 436, 534
NmeAIII GCCGAG 4 cut(s) 272, 284, 411, 418
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 740
PctI GAATGC 1 cut(s) 942
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 722
Pfl23II CGTACG 1 cut(s) 468
PflFI GACNNNGTC 1 cut(s) 808
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
PleI GAGTC 4 cut(s) 101, 368, 396, 913
PpsI GAGTC 4 cut(s) 101, 368, 396, 913
PpuMI RGGWCCY 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 3 cut(s) 333, 436, 534
PspPI GGNCC 1 cut(s) 532
PspPPI RGGWCCY 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 2 cut(s) 470, 503
RsaNI GTAC 2 cut(s) 469, 502
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 305
SacII CCGCGG 2 cut(s) 450, 496
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 528, 791
SatI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
Sau3AI GATC 3 cut(s) 59, 396, 949
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 4 cut(s) 101, 369, 396, 914
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 194, 305
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 352
Sfr303I CCGCGG 2 cut(s) 450, 496
SgrBI CCGCGG 2 cut(s) 450, 496
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 70, 527
SmoI CTYRAG 2 cut(s) 70, 527
Sse9I AATT 2 cut(s) 911, 979
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 5 cut(s) 268, 560, 767, 808, 821
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 911, 979
TauI GCSGC 5 cut(s) 168, 187, 458, 461, 482
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 2 cut(s) 528, 791
Tru9I TTAA 2 cut(s) 528, 791
TscAI CASTG 2 cut(s) 128, 700
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 2 cut(s) 255, 933
TspGWI ACGGA 2 cut(s) 577, 720
TspRI CASTG 2 cut(s) 128, 700
Tth111I GACNNNGTC 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 781
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 911
XbaI TCTAGA 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.