Rh7BG148400

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015077
Physical Location & Seq
Forward (+)
11037068 .. 11038003
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG148400.1

Sequence Viewer

Length: 936 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGTTCACCGACTTCGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCATCCAGAAGTTCAGCGAGCAAACCCGCGCAAACAACGGCGCCGTTTCCCGCCTTCCGACGAACCCAGTTCAAATCCCAAGCTATAGCTCCTCTTCCTCTTGCTCCACCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTTCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTGAAGGCCTCAGTGGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCTCCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGAAAGTCCTTGCTAATTAG

Protein Analysis

311

Amino Acids

34.4

Weight (kDa)

9.23

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 113 - 162 6.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 239, 422
AccI GTMKAC 1 cut(s) 180
AccII CGCG 4 cut(s) 228, 465, 494, 496
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 2 cut(s) 793, 863
AcyI GRCGYC 2 cut(s) 240, 582
AfaI GTAC 3 cut(s) 314, 341, 491
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 6 cut(s) 282, 288, 337, 478, 532, 748
AluI AGCT 6 cut(s) 282, 288, 337, 478, 532, 748
Alw26I GTCTC 1 cut(s) 762
AlwNI CAGNNNCTG 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 3 cut(s) 570, 624, 837
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 2 cut(s) 793, 863
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
Asp700I GAANNNNTTC 1 cut(s) 892
AspLEI GCGC 5 cut(s) 230, 242, 467, 496, 498
AspS9I GGNCC 2 cut(s) 520, 824
AsuHPI GGTGA 3 cut(s) 14, 31, 622
AsuII TTCGAA 2 cut(s) 815, 867
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 2 cut(s) 520, 824
BalI TGGCCA 1 cut(s) 839
BanI GGYRCC 2 cut(s) 239, 422
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbvI GCAGC 1 cut(s) 735
BccI CCATC 1 cut(s) 844
BceAI ACGGC 5 cut(s) 227, 253, 548, 562, 790
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 167, 317
BfmI CTRYAG 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 5 cut(s) 88, 444, 447, 468, 749
BlsI GCNGC 5 cut(s) 89, 445, 448, 469, 750
Bme18I GGWCC 2 cut(s) 520, 824
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 520, 824
BmiI GGNNCC 5 cut(s) 162, 172, 241, 424, 522
BmrI ACTGGG 2 cut(s) 146, 260
BmuI ACTGGG 2 cut(s) 146, 260
BplI GAGNNNNNCTC 2 cut(s) 402, 434
Bpu14I TTCGAA 2 cut(s) 815, 867
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 312
BsaHI GRCGYC 2 cut(s) 240, 582
BsaJI CCNNGG 3 cut(s) 99, 481, 840
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 152, 266
BseDI CCNNGG 3 cut(s) 99, 481, 840
BseGI GGATG 3 cut(s) 75, 201, 797
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 152, 266
BsePI GCGCGC 1 cut(s) 494
BseRI GAGGAG 3 cut(s) 163, 280, 360
BseXI GCAGC 1 cut(s) 735
BseYI CCCAGC 1 cut(s) 532
Bsh1236I CGCG 4 cut(s) 228, 465, 494, 496
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 3 cut(s) 572, 626, 839
BshNI GGYRCC 2 cut(s) 239, 422
BsiEI CGRYCG 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 762
BsmBI CGTCTC 1 cut(s) 762
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 3 cut(s) 572, 626, 839
BsoBI CYCGRG 1 cut(s) 550
Bsp119I TTCGAA 2 cut(s) 815, 867
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 840
BspANI GGCC 3 cut(s) 572, 626, 839
BspCNI CTCAG 1 cut(s) 587
BspFNI CGCG 4 cut(s) 228, 465, 494, 496
BspLI GGNNCC 5 cut(s) 162, 172, 241, 424, 522
BspQI GCTCTTC 1 cut(s) 641
BspT104I TTCGAA 2 cut(s) 815, 867
BspT107I GGYRCC 2 cut(s) 239, 422
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 152, 266
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 481, 840
BssHII GCGCGC 1 cut(s) 494
BssMI GATC 1 cut(s) 384
BssNI GRCGYC 2 cut(s) 240, 582
BssT1I CCWWGG 2 cut(s) 99, 840
Bst4CI ACNGT 2 cut(s) 734, 824
Bst6I CTCTTC 3 cut(s) 298, 641, 712
BstACI GRCGYC 2 cut(s) 240, 582
BstAPI GCANNNNNTGC 1 cut(s) 748
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 2 cut(s) 815, 867
BstC8I GCNNGC 3 cut(s) 191, 218, 496
BstDEI CTNAG 1 cut(s) 574
BstDSI CCRYGG 2 cut(s) 481, 840
BstF5I GGATG 3 cut(s) 75, 201, 797
BstFNI CGCG 4 cut(s) 228, 465, 494, 496
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 5 cut(s) 230, 242, 467, 496, 498
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 1 cut(s) 384
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 443, 452, 569, 748
BstSFI CTRYAG 1 cut(s) 283
BstUI CGCG 4 cut(s) 228, 465, 494, 496
BstV1I GCAGC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuRI GGCC 3 cut(s) 572, 626, 839
BtgI CCRYGG 2 cut(s) 481, 840
BtsCI GGATG 3 cut(s) 75, 201, 797
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 3 cut(s) 191, 218, 496
CaiI CAGNNNCTG 1 cut(s) 748
CfoI GCGC 5 cut(s) 230, 242, 467, 496, 498
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 520, 824
CpoI CGGWCCG 1 cut(s) 824
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 313, 340, 490
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CspI CGGWCCG 1 cut(s) 824
CviAII CATG 1 cut(s) 841
CviQI GTAC 3 cut(s) 313, 340, 490
DdeI CTNAG 1 cut(s) 574
DinI GGCGCC 1 cut(s) 241
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 3 cut(s) 298, 641, 712
EarI CTCTTC 3 cut(s) 298, 641, 712
EciI GGCGGA 2 cut(s) 176, 860
Eco130I CCWWGG 2 cut(s) 99, 840
Eco147I AGGCCT 1 cut(s) 572
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 520, 824
Eco88I CYCGRG 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 520
EcoRI GAATTC 2 cut(s) 793, 863
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 840
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
ErhI CCWWGG 2 cut(s) 99, 840
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 1 cut(s) 844
FaiI YATR 2 cut(s) 285, 842
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FatI CATG 1 cut(s) 840
FauI CCCGC 3 cut(s) 233, 257, 609
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 5 cut(s) 88, 444, 447, 468, 749
FokI GGATG 3 cut(s) 62, 188, 784
Fsp4HI GCNGC 5 cut(s) 88, 444, 447, 468, 749
FspBI CTAG 2 cut(s) 167, 317
GlaI GCGC 5 cut(s) 229, 241, 466, 495, 497
GluI GCNGC 5 cut(s) 88, 444, 447, 468, 749
GsaI CCCAGC 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 3 cut(s) 572, 626, 839
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 590
HhaI GCGC 5 cut(s) 230, 242, 467, 496, 498
Hin1I GRCGYC 2 cut(s) 240, 582
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 5 cut(s) 228, 240, 465, 494, 496
HinP1I GCGC 5 cut(s) 228, 240, 465, 494, 496
HinfI GANTC 4 cut(s) 104, 411, 589, 692
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 14, 31, 622
Hpy166II GTNNAC 4 cut(s) 39, 181, 580, 878
Hpy188I TCNGA 6 cut(s) 160, 258, 389, 606, 778, 828
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 4 cut(s) 39, 181, 580, 878
Hpy99I CGWCG 5 cut(s) 262, 715, 734, 811, 824
HpyAV CCTTC 6 cut(s) 263, 562, 601, 773, 863, 903
HpyCH4III ACNGT 2 cut(s) 734, 824
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 13, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 452, 569, 748
HpyF3I CTNAG 1 cut(s) 574
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 2 cut(s) 240, 582
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 5 cut(s) 228, 240, 465, 494, 496
KasI GGCGCC 1 cut(s) 239
Kzo9I GATC 1 cut(s) 384
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 6 cut(s) 160, 176, 293, 308, 483, 745
Lsp1109I GCAGC 1 cut(s) 735
MaeI CTAG 2 cut(s) 167, 317
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 194, 679
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 7 cut(s) 103, 285, 343, 643, 658, 693, 699
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 3 cut(s) 793, 863, 931
MluNI TGGCCA 1 cut(s) 839
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 98, 420
MmeI TCCRAC 4 cut(s) 93, 281, 756, 785
Mox20I TGGCCA 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 1 cut(s) 839
MseI TTAA 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 839
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 894
MvnI CGCG 4 cut(s) 228, 465, 494, 496
MwoI GCNNNNNNNGC 4 cut(s) 443, 452, 569, 748
NarI GGCGCC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 840
NdeII GATC 1 cut(s) 384
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 5 cut(s) 162, 172, 241, 424, 522
NmeAIII GCCGAG 2 cut(s) 399, 406
NmuCI GTSAC 2 cut(s) 194, 679
NspV TTCGAA 2 cut(s) 815, 867
PaeR7I CTCGAG 1 cut(s) 550
PauI GCGCGC 1 cut(s) 494
PceI AGGCCT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 426, 435
PctI GAATGC 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 2 cut(s) 589, 692
PflFI GACNNNGTC 1 cut(s) 772
PkrI GCNGC 5 cut(s) 89, 445, 448, 469, 750
PleI GAGTC 2 cut(s) 98, 419
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 2 cut(s) 98, 419
Ppu21I YACGTR 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 532
PspN4I GGNNCC 5 cut(s) 162, 172, 241, 424, 522
PspPI GGNCC 2 cut(s) 520, 824
PspPPI RGGWCCY 1 cut(s) 520
PspXI VCTCGAGB 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 772
PteI GCGCGC 1 cut(s) 494
RsaI GTAC 3 cut(s) 314, 341, 491
RsaNI GTAC 3 cut(s) 313, 340, 490
Rsr2I CGGWCCG 1 cut(s) 824
RsrII CGGWCCG 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 5 cut(s) 88, 444, 447, 468, 749
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 2 cut(s) 520, 824
SchI GAGTC 2 cut(s) 98, 420
SfcI CTRYAG 1 cut(s) 283
SfoI GGCGCC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 550
SfuI TTCGAA 2 cut(s) 815, 867
SinI GGWCC 2 cut(s) 520, 824
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 515, 550
SmoI CTYRAG 2 cut(s) 515, 550
Sse9I AATT 3 cut(s) 793, 863, 931
SseBI AGGCCT 1 cut(s) 572
SspDI GGCGCC 1 cut(s) 239
SspMI CTAG 2 cut(s) 167, 317
StuI AGGCCT 1 cut(s) 572
StyI CCWWGG 2 cut(s) 99, 840
TaaI ACNGT 2 cut(s) 734, 824
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 33, 48, 551, 815, 867
TasI AATT 3 cut(s) 793, 863, 931
TatI WGTACW 1 cut(s) 339
TauI GCSGC 4 cut(s) 90, 446, 449, 470
TfiI GAWTC 2 cut(s) 589, 692
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 194, 679
TseI GCWGC 1 cut(s) 748
Tsp45I GTSAC 2 cut(s) 194, 679
TspDTI ATGAA 3 cut(s) 48, 786, 885
TspGWI ACGGA 3 cut(s) 44, 166, 470
TspRI CASTG 1 cut(s) 582
Tth111I GACNNNGTC 1 cut(s) 772
VpaK11BI GGWCC 2 cut(s) 520, 824
XapI RAATTY 2 cut(s) 793, 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 912
XhoI CTCGAG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 2 cut(s) 167, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.