RchiOBHm_Chr7g0195031

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015077
Physical Location & Seq
Forward (+)
13001975 .. 13003463
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17442

Sequence Viewer

Length: 564 bp
ATGGGTCGCCGAGATCAGACTCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTCAAGGCCTCCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTCGATTCGCCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATCAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGCTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGAAAGTCCTTGCTAATTAG

Protein Analysis

187

Amino Acids

20.42

Weight (kDa)

8.91

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 11 - 38 4.7e-07 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 207
AccII CGCG 3 cut(s) 93, 122, 124
AciI CCGC 7 cut(s) 63, 72, 75, 91, 96, 244, 473
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 421, 491
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 106, 160, 376
AluI AGCT 3 cut(s) 106, 160, 376
Alw21I GWGCWC 1 cut(s) 506
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 3 cut(s) 198, 252, 465
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 421, 491
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 3 cut(s) 95, 124, 126
AspS9I GGNCC 2 cut(s) 148, 452
AsuHPI GGTGA 2 cut(s) 250, 378
AsuII TTCGAA 2 cut(s) 443, 495
AvaI CYCGRG 1 cut(s) 178
AvaII GGWCC 2 cut(s) 148, 452
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 334, 472
BceAI ACGGC 3 cut(s) 176, 190, 418
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 4 cut(s) 72, 75, 96, 377
BlsI GCNGC 4 cut(s) 73, 76, 97, 378
Bme18I GGWCC 2 cut(s) 148, 452
BmeT110I CYCGRG 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 148, 452
BmiI GGNNCC 2 cut(s) 52, 150
BoxI GACNNNNGTC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 30, 62
Bpu14I TTCGAA 2 cut(s) 443, 495
BpuEI CTTGAG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 109, 468
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
BseDI CCNNGG 2 cut(s) 109, 468
BseGI GGATG 1 cut(s) 425
BsePI GCGCGC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 363
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 93, 122, 124
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 200, 254, 467
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 178
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 3 cut(s) 200, 254, 467
BsoBI CYCGRG 1 cut(s) 178
Bsp119I TTCGAA 2 cut(s) 443, 495
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 2 cut(s) 13, 456
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 7 cut(s) 63, 72, 75, 91, 96, 244, 473
BspANI GGCC 3 cut(s) 200, 254, 467
BspFNI CGCG 3 cut(s) 93, 122, 124
BspLI GGNNCC 2 cut(s) 52, 150
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 2 cut(s) 443, 495
BspT107I GGYRCC 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 109, 468
BssHII GCGCGC 1 cut(s) 122
BssMI GATC 2 cut(s) 13, 456
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 468
Bst4CI ACNGT 2 cut(s) 362, 452
Bst6I CTCTTC 2 cut(s) 269, 340
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBI TTCGAA 2 cut(s) 443, 495
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 2 cut(s) 109, 468
BstF5I GGATG 1 cut(s) 425
BstFNI CGCG 3 cut(s) 93, 122, 124
BstHHI GCGC 3 cut(s) 95, 124, 126
BstKTI GATC 2 cut(s) 16, 459
BstMBI GATC 2 cut(s) 13, 456
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 71, 80, 197, 376
BstPAI GACNNNNGTC 1 cut(s) 314
BstUI CGCG 3 cut(s) 93, 122, 124
BstV1I GCAGC 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuRI GGCC 3 cut(s) 200, 254, 467
BtgI CCRYGG 2 cut(s) 109, 468
BtsCI GGATG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 3 cut(s) 95, 124, 126
Cfr13I GGNCC 2 cut(s) 148, 452
CpoI CGGWCCG 1 cut(s) 452
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CspI CGGWCCG 1 cut(s) 452
CviAII CATG 1 cut(s) 469
CviQI GTAC 1 cut(s) 118
DpnI GATC 2 cut(s) 15, 458
DpnII GATC 2 cut(s) 13, 456
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 269, 340
EarI CTCTTC 2 cut(s) 269, 340
EciI GGCGGA 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 148, 452
Eco88I CYCGRG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 148
EcoRI GAATTC 2 cut(s) 421, 491
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 1 cut(s) 472
FaiI YATR 1 cut(s) 470
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FatI CATG 1 cut(s) 468
FauI CCCGC 1 cut(s) 237
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 72, 75, 96, 377
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 72, 75, 96, 377
GlaI GCGC 3 cut(s) 94, 123, 125
GluI GCNGC 4 cut(s) 72, 75, 96, 377
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 3 cut(s) 200, 254, 467
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 95, 124, 126
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 472
Hin6I GCGC 3 cut(s) 93, 122, 124
HinP1I GCGC 3 cut(s) 93, 122, 124
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 4 cut(s) 19, 39, 217, 320
HphI GGTGA 2 cut(s) 250, 378
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 4 cut(s) 18, 234, 406, 456
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 6 cut(s) 209, 212, 343, 362, 439, 452
HpyAV CCTTC 4 cut(s) 229, 401, 491, 531
HpyCH4III ACNGT 2 cut(s) 362, 452
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 80, 197, 376
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 472
HspAI GCGC 3 cut(s) 93, 122, 124
Kzo9I GATC 2 cut(s) 13, 456
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 111, 373
LpnPI CCDG 7 cut(s) 28, 38, 146, 206, 356, 384, 546
Lsp1109I GCAGC 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 307, 384
MalI GATC 2 cut(s) 15, 458
MboI GATC 2 cut(s) 13, 456
MboII GAAGA 4 cut(s) 271, 286, 321, 327
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 3 cut(s) 421, 491, 559
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 13, 48
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 7 cut(s) 137, 152, 174, 211, 343, 405, 475
Mox20I TGGCCA 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 520
MscI TGGCCA 1 cut(s) 467
MseI TTAA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 522
MvnI CGCG 3 cut(s) 93, 122, 124
MwoI GCNNNNNNNGC 4 cut(s) 71, 80, 197, 376
NcoI CCATGG 1 cut(s) 468
NdeII GATC 2 cut(s) 13, 456
NlaIII CATG 1 cut(s) 472
NlaIV GGNNCC 2 cut(s) 52, 150
NmeAIII GCCGAG 2 cut(s) 27, 35
NmuCI GTSAC 2 cut(s) 307, 384
NspV TTCGAA 2 cut(s) 443, 495
PaeR7I CTCGAG 1 cut(s) 178
PauI GCGCGC 1 cut(s) 122
PceI AGGCCT 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 63
PctI GAATGC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 2 cut(s) 217, 320
PflFI GACNNNGTC 1 cut(s) 400
PkrI GCNGC 4 cut(s) 73, 76, 97, 378
PleI GAGTC 2 cut(s) 13, 47
PpsI GAGTC 2 cut(s) 13, 47
PpuMI RGGWCCY 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 52, 150
PspPI GGNCC 2 cut(s) 148, 452
PspPPI RGGWCCY 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 400
PteI GCGCGC 1 cut(s) 122
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
Rsr2I CGGWCCG 1 cut(s) 452
RsrII CGGWCCG 1 cut(s) 452
SalI GTCGAC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 72, 75, 96, 377
Sau3AI GATC 2 cut(s) 13, 456
Sau96I GGNCC 2 cut(s) 148, 452
SchI GAGTC 2 cut(s) 13, 48
SduI GDGCHC 1 cut(s) 506
SetI ASST 7 cut(s) 56, 108, 144, 162, 240, 378, 416
Sfr274I CTCGAG 1 cut(s) 178
SfuI TTCGAA 2 cut(s) 443, 495
SgrDI CGTCGACG 1 cut(s) 206
SinI GGWCC 2 cut(s) 148, 452
SlaI CTCGAG 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 143, 178
SmoI CTYRAG 2 cut(s) 143, 178
Sse9I AATT 3 cut(s) 421, 491, 559
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 7 cut(s) 63, 72, 75, 91, 96, 244, 473
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 362, 452
TaqI TCGA 5 cut(s) 179, 207, 318, 443, 495
TasI AATT 3 cut(s) 421, 491, 559
TauI GCSGC 3 cut(s) 74, 77, 98
TfiI GAWTC 2 cut(s) 217, 320
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 2 cut(s) 307, 384
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 2 cut(s) 307, 384
TspDTI ATGAA 2 cut(s) 414, 513
TspGWI ACGGA 2 cut(s) 98, 193
Tth111I GACNNNGTC 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 148, 452
XapI RAATTY 2 cut(s) 421, 491
XcmI CCANNNNNNNNNTGG 2 cut(s) 475, 540
XhoI CTCGAG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.