pycom06g09980

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015077
Physical Location & Seq
Reverse (-)
15295226 .. 15296583
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09980.2

Sequence Viewer

Length: 1137 bp
ATGGACACAATGCAAGAAAACAATCTTGCTTTTGGGTTCACAGACGCCATTGACATCGGATCTTCTCTCTCAAATATCATACTAACAAGCTCCACAAACACCCTGGACTCGATTTTTTCTCACTGCCCACAAACACTCACCACCGCCGTAACAACCACCAGCAGCGGCAGTTCTGTATCCGAGCCGCTGGGCTCATCAGTTTACCTCCGCCAAAGAGACCTTCTCCAGAAGTTCTGCGATGAAAGCCGAGCAAACGCAAACGCCACGGTTTCGCGCTCTTTTGAGACGAACCCATTGCAGAGCTCGGCTTGTTCTTCGACCACTTACATGGCTCCATACAAGAAGAAGCTCTATAGGGGAGTACGGCAGAGACATTGGGGCAAATGGGTAGCCGAGATCAGACTCCCTCAGAACAGAGTGAGGGTCTGGCTCGGCACCTACGACACTGCGGAAGCCGCCGCCTATGCGTACGACAGGGCGGCCTATAAGCTCCGCGGTGAGTACGCGAGGTTGAACTTCCCAAATCTTACGGACCCGAGCAAGTTGGGTTTCGGCGACGGTTCTAGACTGAACGCCGTGAAAAACTCCGTGGATGCGAAAATCCAAGCGATTATTCAGAAGGTGAAGAGGGACAGAGCCAAGAAGAATGTGAAGAAGAGCAGTTCTTCAGTTGGTGGCGGTGATAGGAGTTTCAGTGAGAATGGGAAGGTTGTGAAGGTGGAATCCTCTCCGTTGTCCTCGTCGTCGCCTTTGGTCTTTGGCGACGGTTTTGGCCACGAAACGGCGTCATTAACCCCGACGCCGACCGTGTCTGAGGACGGGGTTTGGAGGAGTGAGAAGAACTCACCGCCGTCTGTTTCAACAGAGTTTCAAATGGGGATGGCGGAGTTGGGAATGGGAGAAGAGTCGGAATTTGAAGGATGTTTTTCTTGTTTTAAACCCCGCGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAATATCGAAAATCCCGAATCGTACCCAAAAAATCTTGAAACCGAATAAAAAATATTTCAAACCGAAAATCCTGAAAATTTTGGTACCAATCCTAACCTTTTCGGTACAAGATTCAGACTCTCAATCTGATTTTTTTGGTAATCCCAAACCGAACCGAAGTTAA

Protein Analysis

379

Amino Acids

41.07

Weight (kDa)

9.44

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1057
AccB1I GGYRCC 2 cut(s) 434, 1057
AccII CGCG 4 cut(s) 274, 495, 506, 945
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 2 cut(s) 911, 1050
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 3 cut(s) 45, 785, 800
AfaI GTAC 6 cut(s) 363, 470, 503, 997, 1059, 1080
AfiI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
AgsI TTSAA 6 cut(s) 514, 861, 872, 917, 1012, 1033
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 4 cut(s) 204, 236, 597, 629
AluBI AGCT 4 cut(s) 90, 303, 349, 490
AluI AGCT 4 cut(s) 90, 303, 349, 490
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 210, 278, 364
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 2 cut(s) 480, 772
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 911, 1050
Asp718I GGTACC 1 cut(s) 1057
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 5 cut(s) 130, 509, 634, 692, 837
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 2 cut(s) 434, 1057
BanII GRGCYC 2 cut(s) 194, 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 874
BceAI ACGGC 5 cut(s) 131, 380, 560, 798, 835
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 210, 278, 364
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 352
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
BlsI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 4 cut(s) 333, 436, 534, 1059
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 583
BplI GAGNNNNNCTC 4 cut(s) 207, 239, 827, 859
BpmI CTGGAG 1 cut(s) 209
BsaHI GRCGYC 3 cut(s) 45, 785, 800
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BseGI GGATG 3 cut(s) 598, 885, 926
BseLI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 422, 804
BseRI GAGGAG 1 cut(s) 844
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 4 cut(s) 274, 495, 506, 945
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 2 cut(s) 482, 774
BshNI GGYRCC 2 cut(s) 434, 1057
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 535
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
BsmAI GTCTC 3 cut(s) 210, 278, 364
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 482, 774
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 194, 305
Bsp143I GATC 2 cut(s) 59, 396
BspANI GGCC 2 cut(s) 482, 774
BspCNI CTCAG 2 cut(s) 421, 805
BspFNI CGCG 4 cut(s) 274, 495, 506, 945
BspLI GGNNCC 4 cut(s) 333, 436, 534, 1059
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 2 cut(s) 434, 1057
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BssMI GATC 2 cut(s) 59, 396
BssNI GRCGYC 3 cut(s) 45, 785, 800
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 4 cut(s) 268, 560, 767, 808
Bst6I CTCTTC 3 cut(s) 620, 650, 897
BstACI GRCGYC 3 cut(s) 45, 785, 800
BstDEI CTNAG 2 cut(s) 408, 813
BstDSI CCRYGG 4 cut(s) 264, 493, 588, 943
BstF5I GGATG 3 cut(s) 598, 885, 926
BstFNI CGCG 4 cut(s) 274, 495, 506, 945
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 62, 399
BstMAI GTCTC 3 cut(s) 210, 278, 364
BstMBI GATC 2 cut(s) 59, 396
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 3 cut(s) 243, 455, 464
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 4 cut(s) 274, 495, 506, 945
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 59
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 482, 774
BtgI CCRYGG 4 cut(s) 264, 493, 588, 943
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 598, 885, 926
BtsI GCAGTG 2 cut(s) 121, 444
BtsIMutI CAGTG 3 cut(s) 121, 444, 700
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 532
Cfr42I CCGCGG 2 cut(s) 496, 946
CseI GACGC 3 cut(s) 53, 774, 808
Csp6I GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
CviAII CATG 1 cut(s) 328
CviQI GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
DdeI CTNAG 2 cut(s) 408, 813
DpnI GATC 2 cut(s) 61, 398
DpnII GATC 2 cut(s) 59, 396
DraI TTTAAA 1 cut(s) 937
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 620, 650, 897
EarI CTCTTC 3 cut(s) 620, 650, 897
EciI GGCGGA 2 cut(s) 197, 899
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 194, 305
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 194, 305
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 80, 329, 337, 354, 465, 486
FaqI GGGAC 1 cut(s) 644
FatI CATG 1 cut(s) 327
FauI CCCGC 2 cut(s) 938, 950
Fnu4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FokI GGATG 3 cut(s) 605, 892, 933
FriOI GRGCYC 2 cut(s) 194, 305
Fsp4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 275
GluI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 2 cut(s) 482, 774
HgaI GACGC 3 cut(s) 53, 774, 808
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 3 cut(s) 45, 785, 800
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 7 cut(s) 107, 402, 722, 905, 991, 1085, 1091
HphI GGTGA 5 cut(s) 130, 509, 634, 692, 837
Hpy166II GTNNAC 2 cut(s) 39, 202
Hpy188I TCNGA 9 cut(s) 59, 181, 401, 411, 618, 814, 910, 1090, 1102
Hpy188III TCNNGA 5 cut(s) 226, 564, 988, 1009, 1045
Hpy8I GTNNAC 2 cut(s) 39, 202
Hpy99I CGWCG 5 cut(s) 560, 745, 748, 767, 802
HpyAV CCTTC 5 cut(s) 230, 613, 700, 709, 911
HpyCH4III ACNGT 4 cut(s) 268, 560, 767, 808
HpyCH4V TGCA 2 cut(s) 13, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 455, 464
HpyF3I CTNAG 2 cut(s) 408, 813
Hsp92I GRCGYC 3 cut(s) 45, 785, 800
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 1061
KspI CCGCGG 2 cut(s) 496, 946
Kzo9I GATC 2 cut(s) 59, 396
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 3 cut(s) 95, 337, 495
LpnPI CCDG 8 cut(s) 89, 116, 172, 173, 239, 412, 460, 1058
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 61, 398
MboI GATC 2 cut(s) 59, 396
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 194, 305
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 2 cut(s) 911, 1050
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 4 cut(s) 101, 396, 914, 1085
MmeI TCCRAC 1 cut(s) 888
Mox20I TGGCCA 1 cut(s) 774
MscI TGGCCA 1 cut(s) 774
MseI TTAA 3 cut(s) 791, 936, 1135
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 4 cut(s) 165, 187, 495, 945
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 4 cut(s) 274, 495, 506, 945
MwoI GCNNNNNNNGC 3 cut(s) 243, 455, 464
NdeII GATC 2 cut(s) 59, 396
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 4 cut(s) 333, 436, 534, 1059
NmeAIII GCCGAG 4 cut(s) 272, 284, 411, 418
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 986
PfeI GAWTC 3 cut(s) 722, 991, 1085
Pfl23II CGTACG 1 cut(s) 468
PflFI GACNNNGTC 1 cut(s) 808
PkrI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
PleI GAGTC 4 cut(s) 101, 396, 913, 1085
PpsI GAGTC 4 cut(s) 101, 396, 913, 1085
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 4 cut(s) 333, 436, 534, 1059
PspPI GGNCC 1 cut(s) 532
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 6 cut(s) 363, 470, 503, 997, 1059, 1080
RsaNI GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 305
SacII CCGCGG 2 cut(s) 496, 946
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 791, 936, 1135
SatI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
Sau3AI GATC 2 cut(s) 59, 396
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 4 cut(s) 101, 396, 914, 1085
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 194, 305
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 352
Sfr303I CCGCGG 2 cut(s) 496, 946
SgrBI CCGCGG 2 cut(s) 496, 946
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 2 cut(s) 911, 1050
SspI AATATT 1 cut(s) 1028
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 268, 560, 767, 808
TaqI TCGA 3 cut(s) 110, 317, 980
TasI AATT 2 cut(s) 911, 1050
TauI GCSGC 5 cut(s) 168, 187, 458, 461, 482
TfiI GAWTC 3 cut(s) 722, 991, 1085
Tru1I TTAA 3 cut(s) 791, 936, 1135
Tru9I TTAA 3 cut(s) 791, 936, 1135
TscAI CASTG 3 cut(s) 128, 451, 700
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 3 cut(s) 545, 577, 720
TspRI CASTG 3 cut(s) 128, 451, 700
Tth111I GACNNNGTC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 2 cut(s) 911, 1050
XbaI TCTAGA 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.