Rh7CG151900

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015077
Physical Location & Seq
Forward (+)
12492146 .. 12493616
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG151900.1

Sequence Viewer

Length: 939 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGATCACCGACTTGGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCACCACCACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGAGCAAACCCGCGCAAACGGCGGCGGCGCCGTTGCCCGCCTTCCGACGAACCCAGTTCGAATCCCAAGCTCCTCTTCCTCTTGCTCCACCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTCAAGGCCTCCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTGTTACGACGGTTTGGGACAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGATCGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACCTGGAATTTGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGGAAGTCCTTGCTAATTAA

Protein Analysis

312

Amino Acids

34.25

Weight (kDa)

9.1

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 114 - 163 6.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 248, 425
AccI GTMKAC 2 cut(s) 186, 582
AccII CGCG 4 cut(s) 234, 468, 497, 499
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 796, 866
AcyI GRCGYC 2 cut(s) 249, 585
AfaI GTAC 3 cut(s) 317, 344, 494
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 872
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 4 cut(s) 280, 312, 524, 556
AluBI AGCT 5 cut(s) 291, 340, 481, 535, 751
AluI AGCT 5 cut(s) 291, 340, 481, 535, 751
AlwNI CAGNNNCTG 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 3 cut(s) 573, 627, 840
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 2 cut(s) 796, 866
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 5 cut(s) 236, 251, 470, 499, 501
AspS9I GGNCC 3 cut(s) 523, 827, 859
AsuHPI GGTGA 4 cut(s) 14, 31, 625, 753
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 3 cut(s) 523, 827, 859
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 2 cut(s) 248, 425
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbvI GCAGC 1 cut(s) 738
BccI CCATC 1 cut(s) 847
BceAI ACGGC 5 cut(s) 236, 256, 551, 565, 793
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 863
BfaI CTAG 2 cut(s) 173, 320
BfoI RGCGCY 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 572
BisI GCNGC 7 cut(s) 88, 244, 247, 447, 450, 471, 752
BlsI GCNGC 7 cut(s) 89, 245, 248, 448, 451, 472, 753
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 3 cut(s) 523, 827, 859
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 523, 827, 859
BmiI GGNNCC 5 cut(s) 168, 178, 250, 427, 525
BmrFI CCNGG 1 cut(s) 863
BmrI ACTGGG 2 cut(s) 152, 269
BmuI ACTGGG 2 cut(s) 152, 269
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BpmI CTGGAG 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 249, 585
BsaJI CCNNGG 3 cut(s) 99, 484, 843
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 158, 275
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 99, 484, 843
BseGI GGATG 2 cut(s) 75, 800
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 158, 275
BsePI GCGCGC 1 cut(s) 497
BseRI GAGGAG 4 cut(s) 169, 197, 283, 363
BseXI GCAGC 1 cut(s) 738
BseYI CCCAGC 1 cut(s) 535
Bsh1236I CGCG 4 cut(s) 234, 468, 497, 499
Bsh1285I CGRYCG 2 cut(s) 466, 822
BshFI GGCC 3 cut(s) 575, 629, 842
BshNI GGYRCC 2 cut(s) 248, 425
BsiEI CGRYCG 2 cut(s) 466, 822
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 3 cut(s) 575, 629, 842
BsoBI CYCGRG 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 3 cut(s) 36, 387, 819
Bsp19I CCATGG 1 cut(s) 843
BspANI GGCC 3 cut(s) 575, 629, 842
BspFNI CGCG 4 cut(s) 234, 468, 497, 499
BspLI GGNNCC 5 cut(s) 168, 178, 250, 427, 525
BspQI GCTCTTC 1 cut(s) 644
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 248, 425
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 2 cut(s) 158, 275
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 484, 843
BssHII GCGCGC 1 cut(s) 497
BssMI GATC 3 cut(s) 36, 387, 819
BssNI GRCGYC 2 cut(s) 249, 585
BssT1I CCWWGG 2 cut(s) 99, 843
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 737, 827
Bst6I CTCTTC 3 cut(s) 301, 644, 715
BstACI GRCGYC 2 cut(s) 249, 585
BstAUI TGTACA 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 197, 224, 259, 499
BstDSI CCRYGG 2 cut(s) 484, 843
BstF5I GGATG 2 cut(s) 75, 800
BstFNI CGCG 4 cut(s) 234, 468, 497, 499
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 5 cut(s) 236, 251, 470, 499, 501
BstKTI GATC 3 cut(s) 39, 390, 822
BstMBI GATC 3 cut(s) 36, 387, 819
BstMCI CGRYCG 2 cut(s) 466, 822
BstMWI GCNNNNNNNGC 4 cut(s) 240, 446, 455, 572
BstNI CCWGG 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 861
BstUI CGCG 4 cut(s) 234, 468, 497, 499
BstV1I GCAGC 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 3 cut(s) 575, 629, 842
BtgI CCRYGG 2 cut(s) 484, 843
BtsCI GGATG 2 cut(s) 75, 800
Cac8I GCNNGC 4 cut(s) 197, 224, 259, 499
CaiI CAGNNNCTG 1 cut(s) 751
CfoI GCGC 5 cut(s) 236, 251, 470, 499, 501
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 523, 827, 859
CpoI CGGWCCG 1 cut(s) 827
CseI GACGC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 316, 343, 493
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CspI CGGWCCG 1 cut(s) 827
CviAII CATG 1 cut(s) 844
CviQI GTAC 3 cut(s) 316, 343, 493
DinI GGCGCC 1 cut(s) 250
DpnI GATC 3 cut(s) 38, 389, 821
DpnII GATC 3 cut(s) 36, 387, 819
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 3 cut(s) 301, 644, 715
EarI CTCTTC 3 cut(s) 301, 644, 715
EciI GGCGGA 2 cut(s) 182, 863
Eco130I CCWWGG 2 cut(s) 99, 843
Eco147I AGGCCT 1 cut(s) 575
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 523, 827, 859
Eco88I CYCGRG 1 cut(s) 553
EcoO109I RGGNCCY 2 cut(s) 523, 859
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 861
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 843
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 99, 843
FaeI CATG 1 cut(s) 847
FaiI YATR 1 cut(s) 845
FalI AAGNNNNNCTT 4 cut(s) 280, 312, 880, 912
FaqI GGGAC 1 cut(s) 756
FatI CATG 1 cut(s) 843
FauI CCCGC 3 cut(s) 239, 266, 612
FblI GTMKAC 2 cut(s) 186, 582
Fnu4HI GCNGC 7 cut(s) 88, 244, 247, 447, 450, 471, 752
FokI GGATG 2 cut(s) 62, 787
Fsp4HI GCNGC 7 cut(s) 88, 244, 247, 447, 450, 471, 752
FspBI CTAG 2 cut(s) 173, 320
GlaI GCGC 5 cut(s) 235, 250, 469, 498, 500
GluI GCNGC 7 cut(s) 88, 244, 247, 447, 450, 471, 752
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 3 cut(s) 575, 629, 842
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 593
HhaI GCGC 5 cut(s) 236, 251, 470, 499, 501
Hin1I GRCGYC 2 cut(s) 249, 585
Hin1II CATG 1 cut(s) 847
Hin6I GCGC 5 cut(s) 234, 249, 468, 497, 499
HinP1I GCGC 5 cut(s) 234, 249, 468, 497, 499
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 6 cut(s) 104, 282, 393, 414, 592, 695
HpaII CCGG 1 cut(s) 84
HphI GGTGA 4 cut(s) 14, 31, 625, 753
Hpy166II GTNNAC 3 cut(s) 187, 583, 881
Hpy188I TCNGA 6 cut(s) 166, 267, 392, 609, 781, 831
Hpy188III TCNNGA 2 cut(s) 34, 211
Hpy8I GTNNAC 3 cut(s) 187, 583, 881
Hpy99I CGWCG 7 cut(s) 271, 584, 587, 718, 737, 814, 827
HpyAV CCTTC 5 cut(s) 272, 604, 776, 866, 906
HpyCH4III ACNGT 2 cut(s) 737, 827
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 13, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 446, 455, 572
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 249, 585
Hsp92II CATG 1 cut(s) 847
HspAI GCGC 5 cut(s) 234, 249, 468, 497, 499
KasI GGCGCC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 36, 387, 819
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 6 cut(s) 166, 182, 296, 311, 486, 748
Lsp1109I GCAGC 1 cut(s) 738
MaeI CTAG 2 cut(s) 173, 320
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 4 cut(s) 200, 682, 728, 759
MalI GATC 3 cut(s) 38, 389, 821
MboI GATC 3 cut(s) 36, 387, 819
MboII GAAGA 7 cut(s) 103, 288, 346, 646, 661, 696, 702
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 3 cut(s) 796, 866, 934
MluNI TGGCCA 1 cut(s) 842
Mly113I GGCGCC 1 cut(s) 249
MlyI GAGTC 3 cut(s) 98, 387, 423
MmeI TCCRAC 3 cut(s) 93, 290, 759
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 895
MscI TGGCCA 1 cut(s) 842
MseI TTAA 2 cut(s) 669, 937
Msp20I TGGCCA 1 cut(s) 842
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 4 cut(s) 234, 468, 497, 499
MwoI GCNNNNNNNGC 4 cut(s) 240, 446, 455, 572
NarI GGCGCC 1 cut(s) 249
NcoI CCATGG 1 cut(s) 843
NdeII GATC 3 cut(s) 36, 387, 819
NlaIII CATG 1 cut(s) 847
NlaIV GGNNCC 5 cut(s) 168, 178, 250, 427, 525
NmeAIII GCCGAG 2 cut(s) 402, 409
NmuCI GTSAC 3 cut(s) 200, 682, 759
NspV TTCGAA 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 553
PauI GCGCGC 1 cut(s) 497
PceI AGGCCT 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 429, 438
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 895
PfeI GAWTC 3 cut(s) 282, 592, 695
PflFI GACNNNGTC 1 cut(s) 775
PkrI GCNGC 7 cut(s) 89, 245, 248, 448, 451, 472, 753
Ple19I CGATCG 1 cut(s) 822
PleI GAGTC 3 cut(s) 98, 387, 422
PluTI GGCGCC 1 cut(s) 252
PpsI GAGTC 3 cut(s) 98, 387, 422
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 2 cut(s) 523, 859
Psp5II RGGWCCY 2 cut(s) 523, 859
Psp6I CCWGG 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 5 cut(s) 168, 178, 250, 427, 525
PspPI GGNCC 3 cut(s) 523, 827, 859
PspPPI RGGWCCY 2 cut(s) 523, 859
PspXI VCTCGAGB 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 751
PsyI GACNNNGTC 1 cut(s) 775
PteI GCGCGC 1 cut(s) 497
PvuI CGATCG 1 cut(s) 822
RsaI GTAC 3 cut(s) 317, 344, 494
RsaNI GTAC 3 cut(s) 316, 343, 493
Rsr2I CGGWCCG 1 cut(s) 827
RsrII CGGWCCG 1 cut(s) 827
SalI GTCGAC 1 cut(s) 581
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 669, 937
SatI GCNGC 7 cut(s) 88, 244, 247, 447, 450, 471, 752
Sau3AI GATC 3 cut(s) 36, 387, 819
Sau96I GGNCC 3 cut(s) 523, 827, 859
SchI GAGTC 3 cut(s) 98, 387, 423
ScrFI CCNGG 1 cut(s) 863
SfoI GGCGCC 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 280
SgrDI CGTCGACG 1 cut(s) 581
SinI GGWCC 3 cut(s) 523, 827, 859
SlaI CTCGAG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 518, 553
SmoI CTYRAG 2 cut(s) 518, 553
Sse9I AATT 3 cut(s) 796, 866, 934
SseBI AGGCCT 1 cut(s) 575
SspDI GGCGCC 1 cut(s) 248
SspMI CTAG 2 cut(s) 173, 320
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 2 cut(s) 99, 843
TaaI ACNGT 2 cut(s) 737, 827
TaiI ACGT 1 cut(s) 317
TaqI TCGA 6 cut(s) 33, 280, 554, 582, 818, 822
TasI AATT 3 cut(s) 796, 866, 934
TatI WGTACW 1 cut(s) 342
TauI GCSGC 6 cut(s) 90, 246, 249, 449, 452, 473
TfiI GAWTC 3 cut(s) 282, 592, 695
Tru1I TTAA 2 cut(s) 669, 937
Tru9I TTAA 2 cut(s) 669, 937
TseFI GTSAC 3 cut(s) 200, 682, 759
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 3 cut(s) 200, 682, 759
TspDTI ATGAA 3 cut(s) 48, 789, 888
TspGWI ACGGA 4 cut(s) 44, 172, 473, 568
Tth111I GACNNNGTC 1 cut(s) 775
VpaK11BI GGWCC 3 cut(s) 523, 827, 859
XapI RAATTY 2 cut(s) 796, 866
XcmI CCANNNNNNNNNTGG 2 cut(s) 850, 915
XhoI CTCGAG 1 cut(s) 553
XmiI GTMKAC 2 cut(s) 186, 582
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 2 cut(s) 173, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.