RLG00000004151

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015077
Physical Location & Seq
Reverse (-)
56610926 .. 56611852
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004151

Sequence Viewer

Length: 927 bp
ATGGAAACAATGCGACAAAATCACCTCCCTTTCGAGATCACCGACTTCGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCACCACCCCAGTGTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGAGCAAACCCGCTCAAACGGCGCCGTTTCCCGCCTTCCGACGAACCCAGTTCAAATCCCAAGCTCCTCTTCCTCTTGCTCCACCACGTACCTTGCCCCCACCAAGAAGAAGCTGTACAGAGGCGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCTGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTGAAGGCCTCCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGGGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTTGTGGTTCGGTCAAGACTGAAGAAGTGACCAAAGTGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTAACGACGGTTTGGGGCAGGAGCTGCTGTCATCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATCTGGGAAGTCCTTGCTAATTAG

Protein Analysis

309

Amino Acids

33.92

Weight (kDa)

8.71

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 110 - 159 6.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 236, 413
AccBSI CCGCTC 1 cut(s) 228
AccI GTMKAC 2 cut(s) 180, 570
AccII CGCG 3 cut(s) 456, 485, 487
AciI CCGC 9 cut(s) 87, 187, 226, 247, 426, 438, 454, 459, 836
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 2 cut(s) 784, 854
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 2 cut(s) 237, 573
AfaI GTAC 3 cut(s) 305, 332, 482
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 269
AjuI GAANNNNNNNTTGG 4 cut(s) 268, 300, 512, 544
AleI CACNNNNGTG 1 cut(s) 152
AluBI AGCT 6 cut(s) 279, 328, 434, 469, 523, 739
AluI AGCT 6 cut(s) 279, 328, 434, 469, 523, 739
AlwNI CAGNNNCTG 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 3 cut(s) 561, 615, 828
ApeKI GCWGC 2 cut(s) 434, 739
ApoI RAATTY 2 cut(s) 784, 854
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
Asp700I GAANNNNTTC 1 cut(s) 883
AspLEI GCGC 4 cut(s) 239, 458, 487, 489
AspS9I GGNCC 2 cut(s) 511, 815
AsuHPI GGTGA 4 cut(s) 14, 31, 613, 741
AsuII TTCGAA 2 cut(s) 806, 858
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 2 cut(s) 511, 815
BalI TGGCCA 1 cut(s) 830
BanI GGYRCC 2 cut(s) 236, 413
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbvI GCAGC 2 cut(s) 421, 726
BccI CCATC 1 cut(s) 835
BceAI ACGGC 5 cut(s) 224, 250, 539, 553, 781
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 5 cut(s) 88, 435, 438, 459, 740
BlsI GCNGC 5 cut(s) 89, 436, 439, 460, 741
Bme18I GGWCC 2 cut(s) 511, 815
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 511, 815
BmiI GGNNCC 5 cut(s) 162, 172, 238, 415, 513
BmrI ACTGGG 2 cut(s) 146, 257
BmuI ACTGGG 2 cut(s) 146, 257
BplI GAGNNNNNCTC 2 cut(s) 393, 425
BpmI CTGGAG 1 cut(s) 188
Bpu14I TTCGAA 2 cut(s) 806, 858
BpuEI CTTGAG 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 303
BsaHI GRCGYC 2 cut(s) 237, 573
BsaJI CCNNGG 3 cut(s) 99, 472, 831
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 152, 263
BseDI CCNNGG 3 cut(s) 99, 472, 831
BseGI GGATG 2 cut(s) 75, 788
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 152, 263
BsePI GCGCGC 1 cut(s) 485
BseRI GAGGAG 3 cut(s) 163, 191, 271
BseXI GCAGC 2 cut(s) 421, 726
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 3 cut(s) 456, 485, 487
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 3 cut(s) 563, 617, 830
BshNI GGYRCC 2 cut(s) 236, 413
BsiEI CGRYCG 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 3 cut(s) 563, 617, 830
BsoBI CYCGRG 1 cut(s) 541
Bsp119I TTCGAA 2 cut(s) 806, 858
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 3 cut(s) 36, 375, 903
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 9 cut(s) 87, 187, 226, 247, 426, 438, 454, 459, 836
BspANI GGCC 3 cut(s) 563, 617, 830
BspFNI CGCG 3 cut(s) 456, 485, 487
BspLI GGNNCC 5 cut(s) 162, 172, 238, 415, 513
BspQI GCTCTTC 1 cut(s) 632
BspT104I TTCGAA 2 cut(s) 806, 858
BspT107I GGYRCC 2 cut(s) 236, 413
BsrBI CCGCTC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 2 cut(s) 152, 263
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 472, 831
BssHII GCGCGC 1 cut(s) 485
BssMI GATC 3 cut(s) 36, 375, 903
BssNI GRCGYC 2 cut(s) 237, 573
BssT1I CCWWGG 2 cut(s) 99, 831
Bst4CI ACNGT 2 cut(s) 725, 815
Bst6I CTCTTC 3 cut(s) 289, 632, 703
BstACI GRCGYC 2 cut(s) 237, 573
BstAPI GCANNNNNTGC 1 cut(s) 739
BstAUI TGTACA 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 303
BstBI TTCGAA 2 cut(s) 806, 858
BstC8I GCNNGC 3 cut(s) 191, 218, 487
BstDSI CCRYGG 2 cut(s) 472, 831
BstF5I GGATG 2 cut(s) 75, 788
BstFNI CGCG 3 cut(s) 456, 485, 487
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 4 cut(s) 239, 458, 487, 489
BstKTI GATC 3 cut(s) 39, 378, 906
BstMBI GATC 3 cut(s) 36, 375, 903
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 5 cut(s) 234, 434, 443, 560, 739
BstUI CGCG 3 cut(s) 456, 485, 487
BstV1I GCAGC 2 cut(s) 421, 726
BstXI CCANNNNNNTGG 1 cut(s) 523
BsuRI GGCC 3 cut(s) 563, 617, 830
BtgI CCRYGG 2 cut(s) 472, 831
BtsCI GGATG 2 cut(s) 75, 788
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 3 cut(s) 191, 218, 487
CaiI CAGNNNCTG 1 cut(s) 739
CfoI GCGC 4 cut(s) 239, 458, 487, 489
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 511, 815
CpoI CGGWCCG 1 cut(s) 815
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 304, 331, 481
CspCI CAANNNNNGTGG 4 cut(s) 289, 324, 454, 489
CspI CGGWCCG 1 cut(s) 815
CviAII CATG 1 cut(s) 832
CviQI GTAC 3 cut(s) 304, 331, 481
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 38, 377, 905
DpnII GATC 3 cut(s) 36, 375, 903
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 3 cut(s) 289, 632, 703
EarI CTCTTC 3 cut(s) 289, 632, 703
EciI GGCGGA 2 cut(s) 176, 851
Eco130I CCWWGG 2 cut(s) 99, 831
Eco147I AGGCCT 1 cut(s) 563
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 511, 815
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 2 cut(s) 784, 854
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 831
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 99, 831
FaeI CATG 1 cut(s) 835
FaiI YATR 1 cut(s) 833
FalI AAGNNNNNCTT 4 cut(s) 268, 300, 868, 900
FatI CATG 1 cut(s) 831
FauI CCCGC 2 cut(s) 233, 254
FblI GTMKAC 2 cut(s) 180, 570
Fnu4HI GCNGC 5 cut(s) 88, 435, 438, 459, 740
FokI GGATG 2 cut(s) 62, 775
Fsp4HI GCNGC 5 cut(s) 88, 435, 438, 459, 740
FspBI CTAG 1 cut(s) 167
GlaI GCGC 4 cut(s) 238, 457, 486, 488
GluI GCNGC 5 cut(s) 88, 435, 438, 459, 740
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 563, 617, 830
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 581
HhaI GCGC 4 cut(s) 239, 458, 487, 489
Hin1I GRCGYC 2 cut(s) 237, 573
Hin1II CATG 1 cut(s) 835
Hin6I GCGC 4 cut(s) 237, 456, 485, 487
HinP1I GCGC 4 cut(s) 237, 456, 485, 487
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 5 cut(s) 104, 381, 402, 580, 683
HpaII CCGG 1 cut(s) 84
HphI GGTGA 4 cut(s) 14, 31, 613, 741
Hpy166II GTNNAC 3 cut(s) 181, 571, 869
Hpy188I TCNGA 6 cut(s) 160, 255, 380, 597, 769, 819
Hpy188III TCNNGA 3 cut(s) 34, 205, 658
Hpy8I GTNNAC 3 cut(s) 181, 571, 869
Hpy99I CGWCG 7 cut(s) 259, 572, 575, 706, 725, 802, 815
HpyAV CCTTC 7 cut(s) 260, 553, 592, 598, 764, 854, 894
HpyCH4III ACNGT 2 cut(s) 725, 815
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 1 cut(s) 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 234, 434, 443, 560, 739
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 2 cut(s) 237, 573
Hsp92II CATG 1 cut(s) 835
HspAI GCGC 4 cut(s) 237, 456, 485, 487
KasI GGCGCC 1 cut(s) 236
Kzo9I GATC 3 cut(s) 36, 375, 903
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 6 cut(s) 160, 176, 284, 299, 474, 736
Lsp1109I GCAGC 2 cut(s) 421, 726
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 194, 670
MalI GATC 3 cut(s) 38, 377, 905
MbiI CCGCTC 1 cut(s) 228
MboI GATC 3 cut(s) 36, 375, 903
MboII GAAGA 8 cut(s) 103, 276, 334, 634, 649, 677, 684, 690
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 3 cut(s) 784, 854, 922
MluNI TGGCCA 1 cut(s) 830
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 3 cut(s) 98, 375, 411
MmeI TCCRAC 4 cut(s) 93, 138, 278, 747
Mox20I TGGCCA 1 cut(s) 830
MroXI GAANNNNTTC 1 cut(s) 883
MscI TGGCCA 1 cut(s) 830
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 830
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 885
MvnI CGCG 3 cut(s) 456, 485, 487
MwoI GCNNNNNNNGC 5 cut(s) 234, 434, 443, 560, 739
NarI GGCGCC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 831
NdeII GATC 3 cut(s) 36, 375, 903
NlaIII CATG 1 cut(s) 835
NlaIV GGNNCC 5 cut(s) 162, 172, 238, 415, 513
NmeAIII GCCGAG 2 cut(s) 390, 397
NmuCI GTSAC 2 cut(s) 194, 670
NspV TTCGAA 2 cut(s) 806, 858
OliI CACNNNNGTG 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 541
PauI GCGCGC 1 cut(s) 485
PceI AGGCCT 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 632
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 417, 426
PctI GAATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 883
PfeI GAWTC 2 cut(s) 580, 683
PflFI GACNNNGTC 1 cut(s) 763
PkrI GCNGC 5 cut(s) 89, 436, 439, 460, 741
PleI GAGTC 3 cut(s) 98, 375, 410
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 3 cut(s) 98, 375, 410
Ppu21I YACGTR 1 cut(s) 303
PpuMI RGGWCCY 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 523
PspN4I GGNNCC 5 cut(s) 162, 172, 238, 415, 513
PspPI GGNCC 2 cut(s) 511, 815
PspPPI RGGWCCY 1 cut(s) 511
PspXI VCTCGAGB 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 739
PsyI GACNNNGTC 1 cut(s) 763
PteI GCGCGC 1 cut(s) 485
RsaI GTAC 3 cut(s) 305, 332, 482
RsaNI GTAC 3 cut(s) 304, 331, 481
RseI CAYNNNNRTG 1 cut(s) 152
Rsr2I CGGWCCG 1 cut(s) 815
RsrII CGGWCCG 1 cut(s) 815
SalI GTCGAC 1 cut(s) 569
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 5 cut(s) 88, 435, 438, 459, 740
Sau3AI GATC 3 cut(s) 36, 375, 903
Sau96I GGNCC 2 cut(s) 511, 815
SchI GAGTC 3 cut(s) 98, 375, 411
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 541
SfuI TTCGAA 2 cut(s) 806, 858
SgrDI CGTCGACG 1 cut(s) 569
SinI GGWCC 2 cut(s) 511, 815
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 506, 541
SmoI CTYRAG 2 cut(s) 506, 541
Sse9I AATT 3 cut(s) 784, 854, 922
SseBI AGGCCT 1 cut(s) 563
SsiI CCGC 9 cut(s) 87, 187, 226, 247, 426, 438, 454, 459, 836
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 1 cut(s) 167
StuI AGGCCT 1 cut(s) 563
StyI CCWWGG 2 cut(s) 99, 831
TaaI ACNGT 2 cut(s) 725, 815
TaiI ACGT 1 cut(s) 305
TaqI TCGA 6 cut(s) 33, 48, 542, 570, 806, 858
TaqII GACCGA 1 cut(s) 643
TasI AATT 3 cut(s) 784, 854, 922
TatI WGTACW 1 cut(s) 330
TauI GCSGC 3 cut(s) 90, 440, 461
TfiI GAWTC 2 cut(s) 580, 683
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 194, 670
TseI GCWGC 2 cut(s) 434, 739
Tsp45I GTSAC 2 cut(s) 194, 670
TspDTI ATGAA 3 cut(s) 48, 777, 876
TspGWI ACGGA 4 cut(s) 44, 166, 461, 556
TspRI CASTG 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 511, 815
XapI RAATTY 2 cut(s) 784, 854
XcmI CCANNNNNNNNNTGG 2 cut(s) 838, 903
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 180, 570
XmnI GAANNNNTTC 1 cut(s) 883
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.