Rw7G012600

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015077
Physical Location & Seq
Forward (+)
11963525 .. 11964448
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012600.1

Sequence Viewer

Length: 924 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGATCACCGACTTGGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGAGCAAACCCGCGCAAAAGGCGGCGCCGTTTCCAGCCTTCCGACGAACCCAGTTCGAATCCCAAGCTCCTCTTCCTCTTGCTCCACCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTCAAGGCCTCCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGAAAGTCCTTGCTAATTAG

Protein Analysis

307

Amino Acids

33.8

Weight (kDa)

9.31

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 109 - 158 6.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 233, 410
AccI GTMKAC 2 cut(s) 174, 567
AccII CGCG 4 cut(s) 222, 453, 482, 484
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 2 cut(s) 781, 851
AcyI GRCGYC 2 cut(s) 234, 570
AfaI GTAC 3 cut(s) 302, 329, 479
AfiI CCNNNNNNNGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 4 cut(s) 265, 297, 509, 541
AluBI AGCT 5 cut(s) 276, 325, 466, 520, 736
AluI AGCT 5 cut(s) 276, 325, 466, 520, 736
AlwNI CAGNNNCTG 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 3 cut(s) 558, 612, 825
ApeKI GCWGC 1 cut(s) 736
ApoI RAATTY 2 cut(s) 781, 851
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
Asp700I GAANNNNTTC 1 cut(s) 880
AspLEI GCGC 5 cut(s) 224, 236, 455, 484, 486
AspS9I GGNCC 2 cut(s) 508, 812
AsuHPI GGTGA 4 cut(s) 14, 31, 610, 738
AsuII TTCGAA 3 cut(s) 265, 803, 855
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 2 cut(s) 508, 812
BalI TGGCCA 1 cut(s) 827
BanI GGYRCC 2 cut(s) 233, 410
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbvI GCAGC 1 cut(s) 723
BccI CCATC 1 cut(s) 832
BceAI ACGGC 4 cut(s) 221, 536, 550, 778
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BfaI CTAG 2 cut(s) 161, 305
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 557
BisI GCNGC 6 cut(s) 88, 232, 432, 435, 456, 737
BlsI GCNGC 6 cut(s) 89, 233, 433, 436, 457, 738
Bme18I GGWCC 2 cut(s) 508, 812
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 508, 812
BmiI GGNNCC 5 cut(s) 156, 166, 235, 412, 510
BmrI ACTGGG 2 cut(s) 140, 254
BmuI ACTGGG 2 cut(s) 140, 254
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 3 cut(s) 265, 803, 855
BpuEI CTTGAG 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 234, 570
BsaJI CCNNGG 3 cut(s) 99, 469, 828
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 146, 260
BseDI CCNNGG 3 cut(s) 99, 469, 828
BseGI GGATG 2 cut(s) 75, 785
BseLI CCNNNNNNNGG 1 cut(s) 151
BseNI ACTGG 2 cut(s) 146, 260
BsePI GCGCGC 1 cut(s) 482
BseRI GAGGAG 4 cut(s) 157, 185, 268, 348
BseXI GCAGC 1 cut(s) 723
BseYI CCCAGC 1 cut(s) 520
Bsh1236I CGCG 4 cut(s) 222, 453, 482, 484
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 3 cut(s) 560, 614, 827
BshNI GGYRCC 2 cut(s) 233, 410
BsiEI CGRYCG 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 151
BsmI GAATGC 1 cut(s) 882
BsnI GGCC 3 cut(s) 560, 614, 827
BsoBI CYCGRG 1 cut(s) 538
Bsp119I TTCGAA 3 cut(s) 265, 803, 855
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 2 cut(s) 36, 372
Bsp19I CCATGG 1 cut(s) 828
BspANI GGCC 3 cut(s) 560, 614, 827
BspFNI CGCG 4 cut(s) 222, 453, 482, 484
BspLI GGNNCC 5 cut(s) 156, 166, 235, 412, 510
BspQI GCTCTTC 1 cut(s) 629
BspT104I TTCGAA 3 cut(s) 265, 803, 855
BspT107I GGYRCC 2 cut(s) 233, 410
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 146, 260
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 469, 828
BssHII GCGCGC 1 cut(s) 482
BssMI GATC 2 cut(s) 36, 372
BssNI GRCGYC 2 cut(s) 234, 570
BssT1I CCWWGG 2 cut(s) 99, 828
Bst4CI ACNGT 2 cut(s) 722, 812
Bst6I CTCTTC 3 cut(s) 286, 629, 700
BstACI GRCGYC 2 cut(s) 234, 570
BstAPI GCANNNNNTGC 1 cut(s) 736
BstAUI TGTACA 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 300
BstBI TTCGAA 3 cut(s) 265, 803, 855
BstC8I GCNNGC 3 cut(s) 185, 212, 484
BstDSI CCRYGG 2 cut(s) 469, 828
BstF5I GGATG 2 cut(s) 75, 785
BstFNI CGCG 4 cut(s) 222, 453, 482, 484
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 5 cut(s) 224, 236, 455, 484, 486
BstKTI GATC 2 cut(s) 39, 375
BstMBI GATC 2 cut(s) 36, 372
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 5 cut(s) 228, 431, 440, 557, 736
BstUI CGCG 4 cut(s) 222, 453, 482, 484
BstV1I GCAGC 1 cut(s) 723
BstXI CCANNNNNNTGG 1 cut(s) 520
BsuRI GGCC 3 cut(s) 560, 614, 827
BtgI CCRYGG 2 cut(s) 469, 828
BtsCI GGATG 2 cut(s) 75, 785
Cac8I GCNNGC 3 cut(s) 185, 212, 484
CaiI CAGNNNCTG 1 cut(s) 736
CfoI GCGC 5 cut(s) 224, 236, 455, 484, 486
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 508, 812
CpoI CGGWCCG 1 cut(s) 812
CseI GACGC 1 cut(s) 578
Csp6I GTAC 3 cut(s) 301, 328, 478
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CspI CGGWCCG 1 cut(s) 812
CviAII CATG 1 cut(s) 829
CviQI GTAC 3 cut(s) 301, 328, 478
DinI GGCGCC 1 cut(s) 235
DpnI GATC 2 cut(s) 38, 374
DpnII GATC 2 cut(s) 36, 372
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 3 cut(s) 286, 629, 700
EarI CTCTTC 3 cut(s) 286, 629, 700
EciI GGCGGA 2 cut(s) 170, 848
Eco130I CCWWGG 2 cut(s) 99, 828
Eco147I AGGCCT 1 cut(s) 560
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 508, 812
Eco88I CYCGRG 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 2 cut(s) 781, 851
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 828
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 99, 828
FaeI CATG 1 cut(s) 832
FaiI YATR 1 cut(s) 830
FalI AAGNNNNNCTT 4 cut(s) 265, 297, 865, 897
FatI CATG 1 cut(s) 828
FauI CCCGC 2 cut(s) 227, 597
FblI GTMKAC 2 cut(s) 174, 567
Fnu4HI GCNGC 6 cut(s) 88, 232, 432, 435, 456, 737
FokI GGATG 2 cut(s) 62, 772
Fsp4HI GCNGC 6 cut(s) 88, 232, 432, 435, 456, 737
FspBI CTAG 2 cut(s) 161, 305
GlaI GCGC 5 cut(s) 223, 235, 454, 483, 485
GluI GCNGC 6 cut(s) 88, 232, 432, 435, 456, 737
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 560, 614, 827
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 578
HhaI GCGC 5 cut(s) 224, 236, 455, 484, 486
Hin1I GRCGYC 2 cut(s) 234, 570
Hin1II CATG 1 cut(s) 832
Hin6I GCGC 5 cut(s) 222, 234, 453, 482, 484
HinP1I GCGC 5 cut(s) 222, 234, 453, 482, 484
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 6 cut(s) 104, 267, 378, 399, 577, 680
HpaII CCGG 1 cut(s) 84
HphI GGTGA 4 cut(s) 14, 31, 610, 738
Hpy166II GTNNAC 3 cut(s) 175, 568, 866
Hpy188I TCNGA 6 cut(s) 154, 252, 377, 594, 766, 816
Hpy188III TCNNGA 2 cut(s) 34, 199
Hpy8I GTNNAC 3 cut(s) 175, 568, 866
Hpy99I CGWCG 7 cut(s) 256, 569, 572, 703, 722, 799, 812
HpyAV CCTTC 5 cut(s) 257, 589, 761, 851, 891
HpyCH4III ACNGT 2 cut(s) 722, 812
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 2 cut(s) 13, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 431, 440, 557, 736
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 2 cut(s) 234, 570
Hsp92II CATG 1 cut(s) 832
HspAI GCGC 5 cut(s) 222, 234, 453, 482, 484
KasI GGCGCC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 36, 372
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 6 cut(s) 154, 170, 281, 296, 471, 733
Lsp1109I GCAGC 1 cut(s) 723
MaeI CTAG 2 cut(s) 161, 305
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 188, 667, 744
MalI GATC 2 cut(s) 38, 374
MboI GATC 2 cut(s) 36, 372
MboII GAAGA 7 cut(s) 103, 273, 331, 631, 646, 681, 687
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 3 cut(s) 781, 851, 919
MluNI TGGCCA 1 cut(s) 827
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 3 cut(s) 98, 372, 408
MmeI TCCRAC 3 cut(s) 93, 275, 744
Mox20I TGGCCA 1 cut(s) 827
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 1 cut(s) 827
MseI TTAA 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 827
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 882
MvnI CGCG 4 cut(s) 222, 453, 482, 484
MwoI GCNNNNNNNGC 5 cut(s) 228, 431, 440, 557, 736
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 828
NdeII GATC 2 cut(s) 36, 372
NlaIII CATG 1 cut(s) 832
NlaIV GGNNCC 5 cut(s) 156, 166, 235, 412, 510
NmeAIII GCCGAG 2 cut(s) 387, 394
NmuCI GTSAC 3 cut(s) 188, 667, 744
NspV TTCGAA 3 cut(s) 265, 803, 855
PaeR7I CTCGAG 1 cut(s) 538
PauI GCGCGC 1 cut(s) 482
PceI AGGCCT 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 414, 423
PctI GAATGC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 3 cut(s) 267, 577, 680
PflFI GACNNNGTC 1 cut(s) 760
PkrI GCNGC 6 cut(s) 89, 233, 433, 436, 457, 738
PleI GAGTC 3 cut(s) 98, 372, 407
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 3 cut(s) 98, 372, 407
Ppu21I YACGTR 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 520
PspN4I GGNNCC 5 cut(s) 156, 166, 235, 412, 510
PspPI GGNCC 2 cut(s) 508, 812
PspPPI RGGWCCY 1 cut(s) 508
PspXI VCTCGAGB 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 736
PsyI GACNNNGTC 1 cut(s) 760
PteI GCGCGC 1 cut(s) 482
RsaI GTAC 3 cut(s) 302, 329, 479
RsaNI GTAC 3 cut(s) 301, 328, 478
Rsr2I CGGWCCG 1 cut(s) 812
RsrII CGGWCCG 1 cut(s) 812
SalI GTCGAC 1 cut(s) 566
SapI GCTCTTC 1 cut(s) 629
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 6 cut(s) 88, 232, 432, 435, 456, 737
Sau3AI GATC 2 cut(s) 36, 372
Sau96I GGNCC 2 cut(s) 508, 812
SchI GAGTC 3 cut(s) 98, 372, 408
SfoI GGCGCC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 538
SfuI TTCGAA 3 cut(s) 265, 803, 855
SgrDI CGTCGACG 1 cut(s) 566
SinI GGWCC 2 cut(s) 508, 812
SlaI CTCGAG 1 cut(s) 538
SmlI CTYRAG 2 cut(s) 503, 538
SmoI CTYRAG 2 cut(s) 503, 538
Sse9I AATT 3 cut(s) 781, 851, 919
SseBI AGGCCT 1 cut(s) 560
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 2 cut(s) 161, 305
StuI AGGCCT 1 cut(s) 560
StyI CCWWGG 2 cut(s) 99, 828
TaaI ACNGT 2 cut(s) 722, 812
TaiI ACGT 1 cut(s) 302
TaqI TCGA 6 cut(s) 33, 265, 539, 567, 803, 855
TasI AATT 3 cut(s) 781, 851, 919
TatI WGTACW 1 cut(s) 327
TauI GCSGC 5 cut(s) 90, 234, 434, 437, 458
TfiI GAWTC 3 cut(s) 267, 577, 680
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TseFI GTSAC 3 cut(s) 188, 667, 744
TseI GCWGC 1 cut(s) 736
Tsp45I GTSAC 3 cut(s) 188, 667, 744
TspDTI ATGAA 3 cut(s) 48, 774, 873
TspGWI ACGGA 4 cut(s) 44, 160, 458, 553
Tth111I GACNNNGTC 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 508, 812
XapI RAATTY 2 cut(s) 781, 851
XcmI CCANNNNNNNNNTGG 2 cut(s) 835, 900
XhoI CTCGAG 1 cut(s) 538
XmiI GTMKAC 2 cut(s) 174, 567
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 2 cut(s) 161, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.