Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015077

Physical Location & Seq

Genomic Coordinates Reverse (-)

1506460 .. 1506711

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGGGAGTTTGTCACTAGCATTGCACGGAACGCCGTGACTGGGCTAGCTTCTTTTACTTACAAAGAAGTTTGCTTGGCATGGGGTGTCACAGATGAGCTAGCCAAGCTCAAGGTGACCTTTTCAGATGTCCAAAAAGTGGTCCTCGATGCAGAGGAAAAGCAGAGGAAGAATCCCCATCTGACCGAGTGGTTAGGCAAGCTCAAAGATGTTGCTACGACGTCGATGATGTGCTTGATGAATTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

83

Amino Acids

9.29

Weight (kDa)

6.71

Isoelectric Point (pI)

11.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	11 - 73	1.2e-13	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64380
fragaria_vesca	FvH4_5g04470
malus_domestica	MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica	Prupe.5G117800_v2.0.a1
pyrus_communis	pycom06g09980
rosa_chinensis	RchiOBHm_Chr7g0195031
rosa_laevigata	RLG00000004151 RLG00000015304
rosa_multiflora	Rmu_sc0002246.1_g000002
rosa_rugosa	Rorug07G0020000
rosa_samantha	Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana	Rw7G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	42, 139
AluBI	AGCT	4 cut(s)	50, 100, 109, 202
AluI	AGCT	4 cut(s)	50, 100, 109, 202
ApoI	RAATTY	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	2 cut(s)	46, 100
AvaII	GGWCC	1 cut(s)	142
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	20
BfaI	CTAG	3 cut(s)	18, 47, 101
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	139
BmtI	GCTAGC	2 cut(s)	50, 104
BmuI	ACTGGG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 139
Bse1I	ACTGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	42, 139
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	42, 139
BspOI	GCTAGC	2 cut(s)	50, 104
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	48, 102, 200
BstEII	GGTNACC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 106
BstPI	GGTNACC	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	48, 102, 200
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	6 cut(s)	46, 50, 100, 104, 109, 202
CviKI_1	RGCY	6 cut(s)	46, 50, 100, 104, 109, 202
Eco47I	GGWCC	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
FaeI	CATG	1 cut(s)	84
FaiI	YATR	1 cut(s)	82
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	1 cut(s)	80
FspBI	CTAG	3 cut(s)	18, 47, 101
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	84
HinfI	GANTC	1 cut(s)	172
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	127, 183
Hpy99I	CGWCG	2 cut(s)	223, 226
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	26, 152, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 106
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	84
LpnPI	CCDG	1 cut(s)	27
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	18, 47, 101
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	4 cut(s)	13, 37, 88, 115
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	1 cut(s)	241
MnlI	CCTC	3 cut(s)	148, 155, 159
MwoI	GCNNNNNNNGC	2 cut(s)	32, 106
NheI	GCTAGC	2 cut(s)	46, 100
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	13, 37, 88, 115
PfeI	GAWTC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	139
PspEI	GGTNACC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	142
SetI	ASST	7 cut(s)	52, 102, 111, 117, 122, 204, 224
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	241
SspMI	CTAG	3 cut(s)	18, 47, 101
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	147, 224
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	172
TseFI	GTSAC	4 cut(s)	13, 37, 88, 115
Tsp45I	GTSAC	4 cut(s)	13, 37, 88, 115
TspGWI	ACGGA	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	3 cut(s)	18, 47, 101
ZraI	GACGTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.