Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015077

Physical Location & Seq

Genomic Coordinates Reverse (-)

11910589 .. 11912572

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G117800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACACAATGCAAGACAGTAAGCTTGCTTTTGGGTTTTCTGACACCATTGACATCAGATCTTCACTCTCAAATCTCATCTTAACAAGCAACACAAACACCTTGGACTCAATTTTCTCCCATTGCCCACAAACACTCTCCACCACCACCAGCAACAACAGCTCTGTTTCTGAGCCACTGGGTTCATCAGTTTACCTTCGCCAGAGAGACCTTCTCCAGAAGTTCTGCGACGAAAGCCGGGCAAACGCCGAGGTTTCACGCTTTTTTCAGAAGAACCCAGTTCAGAGCTCTGCTTGTTCTTCAACCTCTTACATGGCTCCATGCAAGAAGAAGCTCTACAGGGGAGTGAGACAGAGGCATTGGGGCAAATGGGTCGCTGAGATCAGGCTCCCTCAGAACAGAATGAGGGTCTGGCTTGGCACATACGACACCGCCGAAGCTGCCGCATATGCTTACGATCGGGCGGCGTATAAGCTTCGAGGAGAGTATGCAAGGTTGAATTTTCCCAATCTTAAGGACCCAAGTAAGATGGGTTTTGGAGATTGCGCTAGATTGGACGCTGTGAAGACCTCCGTGGATGCAAAGATTCAAGCGATTTGCCAGAAGGTGAAGAGAGAAAGAGCCAAGAAGAACGCGAAGAAGAGCAGTAATTCCAGTGAGAATGAGAAGGCTGTGATGAAGGTGGATTCGTCGCTGTCTTCGTCGTCGCCGTCGGGTTTTGGCGACGGTTCTGGTCAAGAATTGGTGTCTTCAACACCAACAGCAACACCAACAGTTTCTGAAGATGGGGTTTGGAGGTGTGAGAATTCACCACCCTCTATTTCAACAGAGTGGCCAATGGGGATGGCAGAGGACTTAGAATTTGAAGGCTGCTTACTTGCAAGAATGCCTTCCTATGATCCTGAGTTGATTTGGGAAGTTCTTGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

311

Amino Acids

34.38

Weight (kDa)

8.34

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64380
fragaria_vesca	FvH4_5g04470
malus_domestica	MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica	Prupe.5G117800_v2.0.a1
pyrus_communis	pycom06g09980
rosa_chinensis	RchiOBHm_Chr7g0195031
rosa_laevigata	RLG00000004151 RLG00000015304
rosa_multiflora	Rmu_sc0002246.1_g000002
rosa_rugosa	Rorug07G0020000
rosa_samantha	Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana	Rw7G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	635
AciI	CCGC	3 cut(s)	432, 444, 464
AclWI	GGATC	1 cut(s)	893
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	499, 805, 860
AcuI	CTGAAG	1 cut(s)	801
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	303, 499, 590, 753, 825, 866
AluBI	AGCT	6 cut(s)	25, 162, 288, 334, 440, 475
AluI	AGCT	6 cut(s)	25, 162, 288, 334, 440, 475
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	2 cut(s)	201, 343
AlwI	GGATC	1 cut(s)	893
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	833
ApeKI	GCWGC	2 cut(s)	440, 870
ApoI	RAATTY	3 cut(s)	499, 805, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
Asp700I	GAANNNNTTC	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	619, 801
AvaII	GGWCC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	290
BarI	GAAGNNNNNNTAC	4 cut(s)	320, 352, 858, 890
BbsI	GAAGAC	3 cut(s)	572, 690, 741
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	427, 857
BccI	CCATC	3 cut(s)	523, 779, 838
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	201, 343
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	512
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	4 cut(s)	441, 444, 465, 871
BlsI	GCNGC	4 cut(s)	442, 445, 466, 872
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	3 cut(s)	318, 389, 519
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	2 cut(s)	188, 272
BmsI	GCATC	1 cut(s)	568
BmuI	ACTGGG	2 cut(s)	188, 272
BpiI	GAAGAC	3 cut(s)	572, 690, 741
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	102, 249, 573
Bse1I	ACTGG	3 cut(s)	183, 278, 654
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	102, 249, 573
BseGI	GGATG	2 cut(s)	583, 849
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	4 cut(s)	162, 369, 407, 894
BseNI	ACTGG	3 cut(s)	183, 278, 654
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	427, 857
Bsh1236I	CGCG	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	201, 343
BsmI	GAATGC	1 cut(s)	891
BsnI	GGCC	1 cut(s)	835
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	59, 381, 457, 898
BspACI	CCGC	3 cut(s)	432, 444, 464
BspANI	GGCC	1 cut(s)	835
BspCNI	CTCAG	4 cut(s)	163, 370, 406, 895
BspFNI	CGCG	1 cut(s)	635
BspLI	GGNNCC	3 cut(s)	318, 389, 519
BspPI	GGATC	1 cut(s)	893
BspQI	GCTCTTC	1 cut(s)	635
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	183, 278, 654
BssECI	CCNNGG	3 cut(s)	102, 249, 573
BssMI	GATC	4 cut(s)	59, 381, 457, 898
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	20, 728, 775
Bst6I	CTCTTC	2 cut(s)	605, 635
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	5 cut(s)	171, 378, 393, 856, 903
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	583, 849
BstFNI	CGCG	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	4 cut(s)	62, 384, 460, 901
BstMAI	GTCTC	2 cut(s)	201, 343
BstMBI	GATC	4 cut(s)	59, 381, 457, 898
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 234, 440, 449
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	635
BstV1I	GCAGC	2 cut(s)	427, 857
BstV2I	GAAGAC	3 cut(s)	572, 690, 741
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	583, 849
BtsIMutI	CAGTG	2 cut(s)	176, 661
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	517
CseI	GACGC	1 cut(s)	566
CviAII	CATG	2 cut(s)	313, 321
DdeI	CTNAG	5 cut(s)	171, 378, 393, 856, 903
DpnI	GATC	4 cut(s)	61, 383, 459, 900
DpnII	GATC	4 cut(s)	59, 381, 457, 898
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	2 cut(s)	605, 635
EarI	CTCTTC	2 cut(s)	605, 635
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	801
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	316, 324
FaiI	YATR	8 cut(s)	314, 322, 424, 448, 450, 471, 489, 897
FalI	AAGNNNNNCTT	2 cut(s)	874, 906
FatI	CATG	2 cut(s)	312, 320
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	441, 444, 465, 871
FokI	GGATG	2 cut(s)	590, 856
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	441, 444, 465, 871
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	441, 444, 465, 871
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	835
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	1 cut(s)	566
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	316, 324
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	2 cut(s)	23, 473
HinfI	GANTC	3 cut(s)	107, 586, 686
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	619, 801
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	7 cut(s)	43, 59, 172, 270, 285, 396, 781
Hpy188III	TCNNGA	3 cut(s)	217, 737, 902
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	6 cut(s)	233, 694, 706, 709, 715, 728
HpyAV	CCTTC	7 cut(s)	206, 221, 598, 661, 673, 860, 900
HpyCH4III	ACNGT	3 cut(s)	20, 728, 775
HpyCH4V	TGCA	5 cut(s)	13, 324, 491, 581, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 234, 440, 449
HpyF3I	CTNAG	5 cut(s)	171, 378, 393, 856, 903
Hsp92II	CATG	2 cut(s)	316, 324
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	4 cut(s)	59, 381, 457, 898
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	2 cut(s)	322, 393
Lsp1109I	GCAGC	2 cut(s)	427, 857
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	549
MalI	GATC	4 cut(s)	61, 383, 459, 900
MboI	GATC	4 cut(s)	59, 381, 457, 898
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	7 cut(s)	111, 499, 649, 740, 805, 860, 928
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	1 cut(s)	101
Mox20I	TGGCCA	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	889
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	2 cut(s)	83, 513
Msp20I	TGGCCA	1 cut(s)	835
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	891
MvnI	CGCG	1 cut(s)	635
MwoI	GCNNNNNNNGC	4 cut(s)	159, 234, 440, 449
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	59, 381, 457, 898
NlaIII	CATG	2 cut(s)	316, 324
NlaIV	GGNNCC	3 cut(s)	318, 389, 519
NmeAIII	GCCGAG	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	3 cut(s)	432, 698, 707
PctI	GAATGC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	889
PfeI	GAWTC	2 cut(s)	586, 686
PkrI	GCNGC	4 cut(s)	442, 445, 466, 872
Ple19I	CGATCG	1 cut(s)	460
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	318, 389, 519
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	59
PvuI	CGATCG	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	83, 513
SatI	GCNGC	4 cut(s)	441, 444, 465, 871
Sau3AI	GATC	4 cut(s)	59, 381, 457, 898
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	7 cut(s)	111, 499, 649, 740, 805, 860, 928
SsiI	CCGC	3 cut(s)	432, 444, 464
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	20, 728, 775
TaqI	TCGA	1 cut(s)	478
TasI	AATT	7 cut(s)	111, 499, 649, 740, 805, 860, 928
TauI	GCSGC	2 cut(s)	446, 467
TfiI	GAWTC	2 cut(s)	586, 686
Tru1I	TTAA	2 cut(s)	83, 513
Tru9I	TTAA	2 cut(s)	83, 513
TscAI	CASTG	2 cut(s)	183, 661
TseI	GCWGC	2 cut(s)	440, 870
TspDTI	ATGAA	2 cut(s)	174, 692
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	2 cut(s)	183, 661
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	3 cut(s)	499, 805, 860
XmnI	GAANNNNTTC	1 cut(s)	889
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.