Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015077

Physical Location & Seq

Genomic Coordinates Reverse (-)

2609265 .. 2610158

Gene Structure 894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAAACAATGCAAGAAAATTACCTCCCTTTCGAGTTCACCGACCTCGACATCCGGTCATCTCTCTCCAACCTCATCCTCACCGGCGGCACAAACACCTTGGACTCCATCTTCTCCCATTTCCCACAAACCCCCACCGCCCACGTCTCGGAGCCTCTCGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGACCAAACCCGCCTAAACGGCGCCGTTTCCCGCCTTCCGGCCAACCCAGTTCAGCTCCCAAGTTGCTCCTCTACGACGTACCTCGCCCCAACAACCAAGAAGAAGCTTTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAGGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTACGCGGCGAGTACGCGCGTCTGAACTTCCCCAACCTCAAGGACCCCACCAAGCTTGACGGCTCCAAGCTCAACGCCGTCAGAGCCTCCGTCGACGCCAAGATTCAGGCCATTTGTCAGAAGGTCAAAAAGGCCAAGAAGAAGAATAAGAGTAGTTCGGTTAAGACAGAGAAACCGACCATAGTGGATTCCTCGACGACATCTTCCTCGACCTCGTCGCATTTGACTTGCTATGATGGTTTGGGACAGGAGCTGCTGTCTTCGGCTACAGGGTCGGAAGATGGGGTGTGGAGGTGTGAGAATTCATCTACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCGGTGGCGGAGATGGAGATGATGGAGGACTTGGATTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATCTGGGAAGTCCTTGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

298

Amino Acids

32.97

Weight (kDa)

8.55

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	105 - 154	6.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64380
fragaria_vesca	FvH4_5g04470
malus_domestica	MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica	Prupe.5G117800_v2.0.a1
pyrus_communis	pycom06g09980
rosa_chinensis	RchiOBHm_Chr7g0195031
rosa_laevigata	RLG00000004151 RLG00000015304
rosa_multiflora	Rmu_sc0002246.1_g000002
rosa_rugosa	Rorug07G0020000
rosa_samantha	Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana	Rw7G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	227, 398
AccI	GTMKAC	2 cut(s)	171, 546
AccII	CGCG	4 cut(s)	441, 459, 470, 472
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	754
AcyI	GRCGYC	2 cut(s)	228, 549
AfaI	GTAC	2 cut(s)	287, 467
AfiI	CCNNNNNNNGG	2 cut(s)	148, 244
AhdI	GACNNNNNGTC	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	6 cut(s)	262, 313, 454, 508, 523, 706
AluI	AGCT	6 cut(s)	262, 313, 454, 508, 523, 706
Alw26I	GTCTC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	706
AoxI	GGCC	4 cut(s)	246, 417, 561, 585
ApeKI	GCWGC	1 cut(s)	706
ApoI	RAATTY	1 cut(s)	754
Asp700I	GAANNNNTTC	1 cut(s)	850
AspLEI	GCGC	3 cut(s)	230, 443, 472
AspS9I	GGNCC	2 cut(s)	496, 785
AsuHPI	GGTGA	2 cut(s)	31, 73
AsuII	TTCGAA	1 cut(s)	776
AvaII	GGWCC	2 cut(s)	496, 785
BanI	GGYRCC	2 cut(s)	227, 398
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	5 cut(s)	116, 683, 728, 805, 814
BceAI	ACGGC	5 cut(s)	215, 241, 515, 529, 751
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	6 cut(s)	88, 420, 423, 444, 460, 707
BlsI	GCNGC	6 cut(s)	89, 421, 424, 445, 461, 708
Bme18I	GGWCC	2 cut(s)	496, 785
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	496, 785
BmiI	GGNNCC	6 cut(s)	153, 163, 229, 400, 498, 517
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	476
BsaHI	GRCGYC	2 cut(s)	228, 549
BsaJI	CCNNGG	2 cut(s)	99, 414
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 244
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	99, 414
BseGI	GGATG	2 cut(s)	51, 75
BseLI	CCNNNNNNNGG	2 cut(s)	148, 244
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	4 cut(s)	154, 182, 265, 336
BseXI	GCAGC	1 cut(s)	693
Bsh1236I	CGCG	4 cut(s)	441, 459, 470, 472
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	248, 419, 563, 587
BshNI	GGYRCC	2 cut(s)	227, 398
BsiEI	CGRYCG	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	55, 84, 245
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	2 cut(s)	148, 244
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	4 cut(s)	248, 419, 563, 587
Bsp119I	TTCGAA	1 cut(s)	776
Bsp143I	GATC	2 cut(s)	360, 870
BspANI	GGCC	4 cut(s)	248, 419, 563, 587
BspFNI	CGCG	4 cut(s)	441, 459, 470, 472
BspLI	GGNNCC	6 cut(s)	153, 163, 229, 400, 498, 517
BspT104I	TTCGAA	1 cut(s)	776
BspT107I	GGYRCC	2 cut(s)	227, 398
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	99, 414
BssMI	GATC	2 cut(s)	360, 870
BssNI	GRCGYC	2 cut(s)	228, 549
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	785
BstACI	GRCGYC	2 cut(s)	228, 549
BstBI	TTCGAA	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	51, 75
BstFNI	CGCG	4 cut(s)	441, 459, 470, 472
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	230, 443, 472
BstKTI	GATC	2 cut(s)	363, 873
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	360, 870
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 419, 428, 536
BstSFI	CTRYAG	1 cut(s)	720
BstUI	CGCG	4 cut(s)	441, 459, 470, 472
BstV1I	GCAGC	1 cut(s)	693
BstV2I	GAAGAC	1 cut(s)	705
BsuRI	GGCC	4 cut(s)	248, 419, 563, 587
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	51, 75
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	706
CfoI	GCGC	3 cut(s)	230, 443, 472
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	496, 785
CpoI	CGGWCCG	1 cut(s)	785
CseI	GACGC	2 cut(s)	461, 557
Csp6I	GTAC	2 cut(s)	286, 466
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CspI	CGGWCCG	1 cut(s)	785
CviQI	GTAC	2 cut(s)	286, 466
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	2 cut(s)	362, 872
DpnII	GATC	2 cut(s)	360, 870
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EciI	GGCGGA	2 cut(s)	167, 821
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	496, 785
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	151
FaiI	YATR	2 cut(s)	635, 687
FalI	AAGNNNNNCTT	2 cut(s)	835, 867
FaqI	GGGAC	1 cut(s)	711
FauI	CCCGC	2 cut(s)	224, 245
FblI	GTMKAC	2 cut(s)	171, 546
Fnu4HI	GCNGC	6 cut(s)	88, 420, 423, 444, 460, 707
FokI	GGATG	2 cut(s)	38, 62
Fsp4HI	GCNGC	6 cut(s)	88, 420, 423, 444, 460, 707
GlaI	GCGC	3 cut(s)	229, 442, 471
GluI	GCNGC	6 cut(s)	88, 420, 423, 444, 460, 707
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	248, 419, 563, 587
HapII	CCGG	3 cut(s)	55, 84, 245
HgaI	GACGC	2 cut(s)	461, 557
HhaI	GCGC	3 cut(s)	230, 443, 472
Hin1I	GRCGYC	2 cut(s)	228, 549
Hin6I	GCGC	3 cut(s)	228, 441, 470
HinP1I	GCGC	3 cut(s)	228, 441, 470
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	2 cut(s)	311, 506
HinfI	GANTC	6 cut(s)	104, 366, 387, 556, 641, 833
HpaII	CCGG	3 cut(s)	55, 84, 245
HphI	GGTGA	2 cut(s)	31, 73
Hpy166II	GTNNAC	3 cut(s)	39, 172, 547
Hpy188I	TCNGA	7 cut(s)	151, 365, 477, 536, 573, 730, 789
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	3 cut(s)	39, 172, 547
Hpy99I	CGWCG	7 cut(s)	286, 548, 551, 652, 673, 772, 785
HpyAV	CCTTC	3 cut(s)	251, 568, 861
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	2 cut(s)	144, 284
HpyCH4V	TGCA	2 cut(s)	13, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 419, 428, 536
HpySE526I	ACGT	2 cut(s)	144, 284
Hsp92I	GRCGYC	2 cut(s)	228, 549
HspAI	GCGC	3 cut(s)	228, 441, 470
KasI	GGCGCC	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	360, 870
LmnI	GCTCC	6 cut(s)	151, 167, 267, 278, 521, 703
Lsp1109I	GCAGC	1 cut(s)	693
MaeII	ACGT	2 cut(s)	144, 284
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	362, 872
MboI	GATC	2 cut(s)	360, 870
MboII	GAAGA	7 cut(s)	103, 319, 604, 607, 648, 705, 743
MluCI	AATT	3 cut(s)	19, 754, 889
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	98, 360, 396
MmeI	TCCRAC	2 cut(s)	93, 708
MroXI	GAANNNNTTC	1 cut(s)	850
MseI	TTAA	1 cut(s)	615
MspI	CCGG	3 cut(s)	55, 84, 245
Mva1269I	GAATGC	1 cut(s)	852
MvnI	CGCG	4 cut(s)	441, 459, 470, 472
MwoI	GCNNNNNNNGC	4 cut(s)	225, 419, 428, 536
NarI	GGCGCC	1 cut(s)	228
NdeII	GATC	2 cut(s)	360, 870
NlaIV	GGNNCC	6 cut(s)	153, 163, 229, 400, 498, 517
NmeAIII	GCCGAG	4 cut(s)	138, 375, 382, 439
NmuCI	GTSAC	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 165, 402, 411
PctI	GAATGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	3 cut(s)	556, 641, 833
PflFI	GACNNNGTC	1 cut(s)	667
PkrI	GCNGC	6 cut(s)	89, 421, 424, 445, 461, 708
PleI	GAGTC	3 cut(s)	98, 360, 395
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	3 cut(s)	98, 360, 395
PpuMI	RGGWCCY	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	496
PspN4I	GGNNCC	6 cut(s)	153, 163, 229, 400, 498, 517
PspPI	GGNCC	2 cut(s)	496, 785
PspPPI	RGGWCCY	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	667
RsaI	GTAC	2 cut(s)	287, 467
RsaNI	GTAC	2 cut(s)	286, 466
Rsr2I	CGGWCCG	1 cut(s)	785
RsrII	CGGWCCG	1 cut(s)	785
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	6 cut(s)	88, 420, 423, 444, 460, 707
Sau3AI	GATC	2 cut(s)	360, 870
Sau96I	GGNCC	2 cut(s)	496, 785
SchI	GAGTC	3 cut(s)	98, 360, 396
SfcI	CTRYAG	1 cut(s)	720
SfoI	GGCGCC	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	776
SgrAI	CRCCGGYG	1 cut(s)	83
SgrDI	CGTCGACG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	496, 785
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	19, 754, 889
SspDI	GGCGCC	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	2 cut(s)	147, 287
TaqI	TCGA	6 cut(s)	33, 48, 546, 647, 662, 776
TasI	AATT	3 cut(s)	19, 754, 889
TauI	GCSGC	5 cut(s)	90, 422, 425, 446, 462
TfiI	GAWTC	3 cut(s)	556, 641, 833
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	747, 843
TspGWI	ACGGA	2 cut(s)	157, 532
Tth111I	GACNNNGTC	1 cut(s)	667
VpaK11BI	GGWCC	2 cut(s)	496, 785
XapI	RAATTY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XmiI	GTMKAC	2 cut(s)	171, 546
XmnI	GAANNNNTTC	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.