RLG00000015304

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015077
Physical Location & Seq
Forward (+)
64255150 .. 64255947
798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015304

Sequence Viewer

Length: 699 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGTTCACCGACATCGATATCCGTTCGTCTCTATCCAATCTCATCCTAACTAACAGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCAACACCCCAGTGTCGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCCAGCAAACCCGCGCAAACGGCGCCGTTTCCCTCCTTCCGACGAACCCAGTTCAAATCCCAAGCTCCTCTTCCTCTTGCTCCACCACGTACGTACCTTGCCCCTACCAAGAAGAAGCTCCGAAGCCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTGAAGACCTCCGTTGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGGAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTGCATGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGA

Protein Analysis

233

Amino Acids

25.71

Weight (kDa)

11.11

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 222, 364, 366
AciI CCGC 6 cut(s) 91, 181, 220, 335, 338, 475
AcsI RAATTY 1 cut(s) 660
AcyI GRCGYC 2 cut(s) 231, 441
AfaI GTAC 3 cut(s) 299, 303, 361
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 4 cut(s) 273, 326, 348, 611
AluI AGCT 4 cut(s) 273, 326, 348, 611
Alw26I GTCTC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 409
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 1 cut(s) 660
AspLEI GCGC 4 cut(s) 224, 233, 366, 368
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 4 cut(s) 14, 31, 481, 613
AsuII TTCGAA 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 409
AvaII GGWCC 1 cut(s) 691
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanI GGYRCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 598
BceAI ACGGC 5 cut(s) 218, 244, 407, 421, 657
BcoDI GTCTC 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 4 cut(s) 92, 335, 338, 612
BlsI GCNGC 4 cut(s) 93, 336, 339, 613
Bme18I GGWCC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 691
BmiI GGNNCC 2 cut(s) 166, 232
BmrI ACTGGG 2 cut(s) 150, 251
BmuI ACTGGG 2 cut(s) 150, 251
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 370
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 2 cut(s) 297, 301
BsaHI GRCGYC 2 cut(s) 231, 441
BsaJI CCNNGG 2 cut(s) 103, 351
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 156, 257
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 103, 351
BseGI GGATG 2 cut(s) 75, 664
BseLI CCNNNNNNNGG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 156, 257
BsePI GCGCGC 1 cut(s) 364
BseRI GAGGAG 3 cut(s) 157, 185, 265
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 3 cut(s) 222, 364, 366
BshFI GGCC 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 230
BshVI ATCGAT 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 409
BsiWI CGTACG 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 682
BspACI CCGC 6 cut(s) 91, 181, 220, 335, 338, 475
BspANI GGCC 1 cut(s) 485
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 3 cut(s) 222, 364, 366
BspLI GGNNCC 2 cut(s) 166, 232
BspQI GCTCTTC 1 cut(s) 500
BspT104I TTCGAA 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 2 cut(s) 156, 257
BssECI CCNNGG 2 cut(s) 103, 351
BssHII GCGCGC 1 cut(s) 364
BssNI GRCGYC 2 cut(s) 231, 441
BssT1I CCWWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 597, 691
Bst6I CTCTTC 3 cut(s) 283, 500, 575
BstACI GRCGYC 2 cut(s) 231, 441
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBAI YACGTR 2 cut(s) 297, 301
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 185, 212, 366
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 75, 664
BstFNI CGCG 3 cut(s) 222, 364, 366
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 4 cut(s) 224, 233, 366, 368
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 228, 230, 611
BstSNI TACGTA 1 cut(s) 301
BstUI CGCG 3 cut(s) 222, 364, 366
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 1 cut(s) 434
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 1 cut(s) 485
BsuTUI ATCGAT 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 75, 664
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 3 cut(s) 185, 212, 366
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 4 cut(s) 224, 233, 366, 368
Cfr13I GGNCC 1 cut(s) 691
ClaI ATCGAT 1 cut(s) 48
CpoI CGGWCCG 1 cut(s) 691
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 298, 302, 360
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CspI CGGWCCG 1 cut(s) 691
CviAII CATG 1 cut(s) 551
CviQI GTAC 3 cut(s) 298, 302, 360
DinI GGCGCC 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 283, 500, 575
EarI CTCTTC 3 cut(s) 283, 500, 575
EciI GGCGGA 1 cut(s) 170
Eco105I TACGTA 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 103
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 409
EcoRI GAATTC 1 cut(s) 660
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 1 cut(s) 554
FaiI YATR 1 cut(s) 552
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FatI CATG 1 cut(s) 550
FauI CCCGC 2 cut(s) 227, 468
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 92, 335, 338, 612
FokI GGATG 2 cut(s) 62, 651
Fsp4HI GCNGC 4 cut(s) 92, 335, 338, 612
GlaI GCGC 4 cut(s) 223, 232, 365, 367
GluI GCNGC 4 cut(s) 92, 335, 338, 612
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 1 cut(s) 485
HgaI GACGC 1 cut(s) 449
HhaI GCGC 4 cut(s) 224, 233, 366, 368
Hin1I GRCGYC 2 cut(s) 231, 441
Hin1II CATG 1 cut(s) 554
Hin6I GCGC 4 cut(s) 222, 231, 364, 366
HinP1I GCGC 4 cut(s) 222, 231, 364, 366
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 3 cut(s) 108, 448, 555
HphI GGTGA 4 cut(s) 14, 31, 481, 613
Hpy166II GTNNAC 3 cut(s) 39, 175, 439
Hpy188I TCNGA 5 cut(s) 249, 330, 465, 641, 695
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 39, 175, 439
Hpy99I CGWCG 5 cut(s) 253, 578, 597, 678, 691
HpyAV CCTTC 4 cut(s) 254, 460, 636, 640
HpyCH4III ACNGT 2 cut(s) 597, 691
HpyCH4IV ACGT 2 cut(s) 296, 300
HpyCH4V TGCA 2 cut(s) 13, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 230, 611
HpySE526I ACGT 2 cut(s) 296, 300
Hsp92I GRCGYC 2 cut(s) 231, 441
Hsp92II CATG 1 cut(s) 554
HspAI GCGC 4 cut(s) 222, 231, 364, 366
KasI GGCGCC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 500
LmnI GCTCC 6 cut(s) 170, 278, 293, 331, 353, 608
Lsp1109I GCAGC 1 cut(s) 598
MaeII ACGT 2 cut(s) 296, 300
MaeIII GTNAC 3 cut(s) 188, 538, 619
MboII GAAGA 8 cut(s) 107, 270, 332, 439, 502, 517, 556, 562
MluCI AATT 1 cut(s) 660
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 2 cut(s) 272, 619
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 156
MvnI CGCG 3 cut(s) 222, 364, 366
MwoI GCNNNNNNNGC 3 cut(s) 228, 230, 611
NarI GGCGCC 1 cut(s) 231
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 2 cut(s) 166, 232
NmuCI GTSAC 3 cut(s) 188, 538, 619
NspV TTCGAA 1 cut(s) 682
OliI CACNNNNGTG 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 409
PauI GCGCGC 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 168
PfeI GAWTC 2 cut(s) 448, 555
Pfl23II CGTACG 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 635
PkrI GCNGC 4 cut(s) 93, 336, 339, 613
PleI GAGTC 1 cut(s) 102
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 102
Ppu21I YACGTR 2 cut(s) 297, 301
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 166, 232
PspPI GGNCC 1 cut(s) 691
PspXI VCTCGAGB 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 611
PsyI GACNNNGTC 1 cut(s) 635
PteI GCGCGC 1 cut(s) 364
RsaI GTAC 3 cut(s) 299, 303, 361
RsaNI GTAC 3 cut(s) 298, 302, 360
RseI CAYNNNNRTG 1 cut(s) 156
Rsr2I CGGWCCG 1 cut(s) 691
RsrII CGGWCCG 1 cut(s) 691
SapI GCTCTTC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 4 cut(s) 92, 335, 338, 612
Sau96I GGNCC 1 cut(s) 691
SchI GAGTC 1 cut(s) 102
SfoI GGCGCC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 409
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 385, 409
SmoI CTYRAG 2 cut(s) 385, 409
SnaBI TACGTA 1 cut(s) 301
Sse9I AATT 1 cut(s) 660
SsiI CCGC 6 cut(s) 91, 181, 220, 335, 338, 475
SspDI GGCGCC 1 cut(s) 230
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 597, 691
TaiI ACGT 2 cut(s) 299, 303
TaqI TCGA 4 cut(s) 33, 48, 410, 682
TasI AATT 1 cut(s) 660
TauI GCSGC 3 cut(s) 94, 337, 340
TfiI GAWTC 2 cut(s) 448, 555
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 3 cut(s) 188, 538, 619
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 3 cut(s) 188, 538, 619
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 4 cut(s) 44, 160, 340, 424
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 691
XapI RAATTY 1 cut(s) 660
XhoI CTCGAG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.