Rh7AG147800

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015077
Physical Location & Seq
Forward (+)
11987409 .. 11988344
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG147800.1

Sequence Viewer

Length: 936 bp
ATGGAAACAATGCAACAAAATCAACTCCCTTTCGAGATCACCGACTTGGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCACCACCACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGAGCAAACCCGCGCAAACGGCGGCGCCGTTTCCCGCCTTCCGACGAACCCAGTTCGAATCCCAAGCTCCTCTTCCTCTTGCTCCCCCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACATACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTCAAGGCCTCCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGCGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACCTGGAATTTGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGGAAGTCCTTGCTAATTAG

Protein Analysis

311

Amino Acids

34.22

Weight (kDa)

9.16

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 113 - 162 6.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 2 cut(s) 186, 579
AccII CGCG 4 cut(s) 234, 465, 494, 496
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 2 cut(s) 793, 863
AcyI GRCGYC 2 cut(s) 246, 582
AfaI GTAC 3 cut(s) 314, 341, 491
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 869
AjnI CCWGG 1 cut(s) 858
AjuI GAANNNNNNNTTGG 4 cut(s) 277, 309, 521, 553
AluBI AGCT 5 cut(s) 288, 337, 478, 532, 748
AluI AGCT 5 cut(s) 288, 337, 478, 532, 748
AlwNI CAGNNNCTG 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 3 cut(s) 570, 624, 837
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 2 cut(s) 793, 863
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
Asp700I GAANNNNTTC 1 cut(s) 892
AspLEI GCGC 5 cut(s) 236, 248, 467, 496, 498
AspS9I GGNCC 3 cut(s) 520, 824, 856
AsuHPI GGTGA 3 cut(s) 31, 622, 750
AsuII TTCGAA 2 cut(s) 277, 815
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 3 cut(s) 520, 824, 856
BalI TGGCCA 1 cut(s) 839
BanI GGYRCC 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbvI GCAGC 1 cut(s) 735
BccI CCATC 1 cut(s) 844
BceAI ACGGC 5 cut(s) 233, 256, 548, 562, 790
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 1 cut(s) 860
BfaI CTAG 2 cut(s) 173, 317
BfoI RGCGCY 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 6 cut(s) 88, 244, 444, 447, 468, 749
BlsI GCNGC 6 cut(s) 89, 245, 445, 448, 469, 750
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 3 cut(s) 520, 824, 856
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 3 cut(s) 520, 824, 856
BmiI GGNNCC 4 cut(s) 168, 178, 247, 522
BmrFI CCNGG 1 cut(s) 860
BmrI ACTGGG 2 cut(s) 152, 266
BmuI ACTGGG 2 cut(s) 152, 266
BplI GAGNNNNNCTC 2 cut(s) 402, 434
BpmI CTGGAG 1 cut(s) 194
Bpu14I TTCGAA 2 cut(s) 277, 815
BpuEI CTTGAG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 312
BsaHI GRCGYC 2 cut(s) 246, 582
BsaJI CCNNGG 3 cut(s) 99, 481, 840
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 158, 272
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 99, 481, 840
BseGI GGATG 2 cut(s) 75, 797
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 158, 272
BsePI GCGCGC 1 cut(s) 494
BseRI GAGGAG 4 cut(s) 169, 197, 280, 360
BseXI GCAGC 1 cut(s) 735
BseYI CCCAGC 1 cut(s) 532
Bsh1236I CGCG 4 cut(s) 234, 465, 494, 496
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 3 cut(s) 572, 626, 839
BshNI GGYRCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 3 cut(s) 572, 626, 839
BsoBI CYCGRG 1 cut(s) 550
Bsp119I TTCGAA 2 cut(s) 277, 815
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 36, 384
Bsp19I CCATGG 1 cut(s) 840
BspANI GGCC 3 cut(s) 572, 626, 839
BspFNI CGCG 4 cut(s) 234, 465, 494, 496
BspLI GGNNCC 4 cut(s) 168, 178, 247, 522
BspQI GCTCTTC 1 cut(s) 641
BspT104I TTCGAA 2 cut(s) 277, 815
BspT107I GGYRCC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 158, 272
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 481, 840
BssHII GCGCGC 1 cut(s) 494
BssMI GATC 2 cut(s) 36, 384
BssNI GRCGYC 2 cut(s) 246, 582
BssT1I CCWWGG 2 cut(s) 99, 840
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 2 cut(s) 734, 824
Bst6I CTCTTC 3 cut(s) 298, 641, 712
BstACI GRCGYC 2 cut(s) 246, 582
BstAPI GCANNNNNTGC 1 cut(s) 748
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 2 cut(s) 277, 815
BstC8I GCNNGC 3 cut(s) 197, 224, 496
BstDSI CCRYGG 2 cut(s) 481, 840
BstF5I GGATG 2 cut(s) 75, 797
BstFNI CGCG 4 cut(s) 234, 465, 494, 496
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 5 cut(s) 236, 248, 467, 496, 498
BstKTI GATC 2 cut(s) 39, 387
BstMBI GATC 2 cut(s) 36, 384
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 5 cut(s) 240, 443, 452, 569, 748
BstNI CCWGG 1 cut(s) 860
BstSCI CCNGG 1 cut(s) 858
BstUI CGCG 4 cut(s) 234, 465, 494, 496
BstV1I GCAGC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 532
BsuRI GGCC 3 cut(s) 572, 626, 839
BtgI CCRYGG 2 cut(s) 481, 840
BtsCI GGATG 2 cut(s) 75, 797
Cac8I GCNNGC 3 cut(s) 197, 224, 496
CaiI CAGNNNCTG 1 cut(s) 748
CfoI GCGC 5 cut(s) 236, 248, 467, 496, 498
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 520, 824, 856
CpoI CGGWCCG 1 cut(s) 824
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 313, 340, 490
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CspI CGGWCCG 1 cut(s) 824
CviAII CATG 1 cut(s) 841
CviQI GTAC 3 cut(s) 313, 340, 490
DinI GGCGCC 1 cut(s) 247
DpnI GATC 2 cut(s) 38, 386
DpnII GATC 2 cut(s) 36, 384
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 3 cut(s) 298, 641, 712
EarI CTCTTC 3 cut(s) 298, 641, 712
EciI GGCGGA 2 cut(s) 182, 860
Eco130I CCWWGG 2 cut(s) 99, 840
Eco147I AGGCCT 1 cut(s) 572
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 3 cut(s) 520, 824, 856
Eco88I CYCGRG 1 cut(s) 550
EcoO109I RGGNCCY 2 cut(s) 520, 856
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 840
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 99, 840
FaeI CATG 1 cut(s) 844
FaiI YATR 2 cut(s) 427, 842
FalI AAGNNNNNCTT 4 cut(s) 277, 309, 877, 909
FatI CATG 1 cut(s) 840
FauI CCCGC 3 cut(s) 239, 263, 609
FblI GTMKAC 2 cut(s) 186, 579
Fnu4HI GCNGC 6 cut(s) 88, 244, 444, 447, 468, 749
FokI GGATG 2 cut(s) 62, 784
Fsp4HI GCNGC 6 cut(s) 88, 244, 444, 447, 468, 749
FspBI CTAG 2 cut(s) 173, 317
GlaI GCGC 5 cut(s) 235, 247, 466, 495, 497
GluI GCNGC 6 cut(s) 88, 244, 444, 447, 468, 749
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 572, 626, 839
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 590
HhaI GCGC 5 cut(s) 236, 248, 467, 496, 498
Hin1I GRCGYC 2 cut(s) 246, 582
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 5 cut(s) 234, 246, 465, 494, 496
HinP1I GCGC 5 cut(s) 234, 246, 465, 494, 496
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 6 cut(s) 104, 279, 390, 411, 589, 692
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 31, 622, 750
Hpy166II GTNNAC 3 cut(s) 187, 580, 878
Hpy188I TCNGA 6 cut(s) 166, 264, 389, 606, 778, 828
Hpy188III TCNNGA 2 cut(s) 34, 211
Hpy8I GTNNAC 3 cut(s) 187, 580, 878
Hpy99I CGWCG 7 cut(s) 268, 581, 584, 715, 734, 811, 824
HpyAV CCTTC 5 cut(s) 269, 601, 773, 863, 903
HpyCH4III ACNGT 2 cut(s) 734, 824
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 13, 884
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 443, 452, 569, 748
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 2 cut(s) 246, 582
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 5 cut(s) 234, 246, 465, 494, 496
KasI GGCGCC 1 cut(s) 245
Kzo9I GATC 2 cut(s) 36, 384
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 6 cut(s) 166, 182, 293, 308, 483, 745
Lsp1109I GCAGC 1 cut(s) 735
MaeI CTAG 2 cut(s) 173, 317
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 3 cut(s) 200, 679, 756
MalI GATC 2 cut(s) 38, 386
MboI GATC 2 cut(s) 36, 384
MboII GAAGA 7 cut(s) 103, 285, 343, 643, 658, 693, 699
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 3 cut(s) 793, 863, 931
MluNI TGGCCA 1 cut(s) 839
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 3 cut(s) 98, 384, 420
MmeI TCCRAC 3 cut(s) 93, 287, 756
Mox20I TGGCCA 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 1 cut(s) 839
MseI TTAA 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 839
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 860
Mva1269I GAATGC 1 cut(s) 894
MvaI CCWGG 1 cut(s) 860
MvnI CGCG 4 cut(s) 234, 465, 494, 496
MwoI GCNNNNNNNGC 5 cut(s) 240, 443, 452, 569, 748
NarI GGCGCC 1 cut(s) 246
NcoI CCATGG 1 cut(s) 840
NdeII GATC 2 cut(s) 36, 384
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 4 cut(s) 168, 178, 247, 522
NmeAIII GCCGAG 2 cut(s) 399, 406
NmuCI GTSAC 3 cut(s) 200, 679, 756
NspV TTCGAA 2 cut(s) 277, 815
PaeR7I CTCGAG 1 cut(s) 550
PauI GCGCGC 1 cut(s) 494
PceI AGGCCT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 246, 426, 435
PctI GAATGC 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 3 cut(s) 279, 589, 692
PflFI GACNNNGTC 1 cut(s) 772
PkrI GCNGC 6 cut(s) 89, 245, 445, 448, 469, 750
PleI GAGTC 3 cut(s) 98, 384, 419
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 3 cut(s) 98, 384, 419
Ppu21I YACGTR 1 cut(s) 312
PpuMI RGGWCCY 2 cut(s) 520, 856
Psp5II RGGWCCY 2 cut(s) 520, 856
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 4 cut(s) 168, 178, 247, 522
PspPI GGNCC 3 cut(s) 520, 824, 856
PspPPI RGGWCCY 2 cut(s) 520, 856
PspXI VCTCGAGB 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 748
PsyI GACNNNGTC 1 cut(s) 772
PteI GCGCGC 1 cut(s) 494
RsaI GTAC 3 cut(s) 314, 341, 491
RsaNI GTAC 3 cut(s) 313, 340, 490
Rsr2I CGGWCCG 1 cut(s) 824
RsrII CGGWCCG 1 cut(s) 824
SalI GTCGAC 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 6 cut(s) 88, 244, 444, 447, 468, 749
Sau3AI GATC 2 cut(s) 36, 384
Sau96I GGNCC 3 cut(s) 520, 824, 856
SchI GAGTC 3 cut(s) 98, 384, 420
ScrFI CCNGG 1 cut(s) 860
SfoI GGCGCC 1 cut(s) 247
Sfr274I CTCGAG 1 cut(s) 550
SfuI TTCGAA 2 cut(s) 277, 815
SgrDI CGTCGACG 1 cut(s) 578
SinI GGWCC 3 cut(s) 520, 824, 856
SlaI CTCGAG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 515, 550
SmoI CTYRAG 2 cut(s) 515, 550
Sse9I AATT 3 cut(s) 793, 863, 931
SseBI AGGCCT 1 cut(s) 572
SspDI GGCGCC 1 cut(s) 245
SspMI CTAG 2 cut(s) 173, 317
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 2 cut(s) 99, 840
TaaI ACNGT 2 cut(s) 734, 824
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 33, 277, 551, 579, 815
TasI AATT 3 cut(s) 793, 863, 931
TatI WGTACW 1 cut(s) 339
TauI GCSGC 5 cut(s) 90, 246, 446, 449, 470
TfiI GAWTC 3 cut(s) 279, 589, 692
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TseFI GTSAC 3 cut(s) 200, 679, 756
TseI GCWGC 1 cut(s) 748
Tsp45I GTSAC 3 cut(s) 200, 679, 756
TspDTI ATGAA 3 cut(s) 48, 786, 885
TspGWI ACGGA 4 cut(s) 44, 172, 470, 565
Tth111I GACNNNGTC 1 cut(s) 772
VpaK11BI GGWCC 3 cut(s) 520, 824, 856
XapI RAATTY 2 cut(s) 793, 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 912
XhoI CTCGAG 1 cut(s) 550
XmiI GTMKAC 2 cut(s) 186, 579
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 2 cut(s) 173, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.