Rh7DG148800

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015077
Physical Location & Seq
Forward (+)
12813938 .. 12815792
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG148800.1

Sequence Viewer

Length: 927 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGATCACCGACTTGGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACCACCACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCGCCAGCGTGACCTCCTCCAGAAGTTCAGCGAGCAAACCCGCGCAAACGGCGGCGCCGTTTCCCGCCTTCCGACGAACCCAGTTCGAATCCCAAGCTCCTCTTCCTCTTGCTCCACCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACTGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCTCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTCAAGGCCACCGTCGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTCGATTCGCCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCACCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCCGATGAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGAAAGTCCTTGCTAATTAG

Protein Analysis

308

Amino Acids

33.98

Weight (kDa)

9.33

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 110 - 159 6.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 236, 413
AccI GTMKAC 2 cut(s) 177, 570
AccII CGCG 2 cut(s) 225, 456
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 2 cut(s) 784, 854
AcyI GRCGYC 2 cut(s) 237, 573
AfaI GTAC 3 cut(s) 305, 332, 482
AfiI CCNNNNNNNGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 4 cut(s) 268, 300, 512, 544
AluBI AGCT 5 cut(s) 279, 328, 469, 523, 739
AluI AGCT 5 cut(s) 279, 328, 469, 523, 739
AlwNI CAGNNNCTG 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 3 cut(s) 561, 615, 828
ApeKI GCWGC 1 cut(s) 739
ApoI RAATTY 2 cut(s) 784, 854
ArsI GACNNNNNNTTYG 2 cut(s) 839, 871
Asp700I GAANNNNTTC 1 cut(s) 883
AspLEI GCGC 3 cut(s) 227, 239, 458
AspS9I GGNCC 2 cut(s) 511, 815
AsuHPI GGTGA 4 cut(s) 14, 31, 613, 741
AsuII TTCGAA 3 cut(s) 268, 806, 858
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 2 cut(s) 511, 815
BalI TGGCCA 1 cut(s) 830
BanI GGYRCC 2 cut(s) 236, 413
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbvI GCAGC 1 cut(s) 726
BccI CCATC 2 cut(s) 697, 835
BceAI ACGGC 5 cut(s) 224, 247, 539, 553, 781
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BfaI CTAG 2 cut(s) 164, 308
BfoI RGCGCY 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 6 cut(s) 88, 235, 435, 438, 459, 740
BlsI GCNGC 6 cut(s) 89, 236, 436, 439, 460, 741
Bme18I GGWCC 2 cut(s) 511, 815
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 511, 815
BmiI GGNNCC 5 cut(s) 159, 169, 238, 415, 513
BmrI ACTGGG 2 cut(s) 143, 257
BmuI ACTGGG 2 cut(s) 143, 257
BoxI GACNNNNGTC 1 cut(s) 677
BplI GAGNNNNNCTC 2 cut(s) 393, 425
BpmI CTGGAG 1 cut(s) 185
Bpu14I TTCGAA 3 cut(s) 268, 806, 858
BpuEI CTTGAG 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 303
BsaHI GRCGYC 2 cut(s) 237, 573
BsaJI CCNNGG 3 cut(s) 99, 472, 831
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 149, 263
BseDI CCNNGG 3 cut(s) 99, 472, 831
BseGI GGATG 2 cut(s) 75, 788
BseLI CCNNNNNNNGG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 149, 263
BseRI GAGGAG 4 cut(s) 160, 188, 271, 351
BseXI GCAGC 1 cut(s) 726
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 225, 456
Bsh1285I CGRYCG 1 cut(s) 454
BshFI GGCC 3 cut(s) 563, 617, 830
BshNI GGYRCC 2 cut(s) 236, 413
BsiEI CGRYCG 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 154
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 3 cut(s) 563, 617, 830
BsoBI CYCGRG 1 cut(s) 541
Bsp119I TTCGAA 3 cut(s) 268, 806, 858
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 2 cut(s) 36, 375
Bsp19I CCATGG 1 cut(s) 831
BspANI GGCC 3 cut(s) 563, 617, 830
BspFNI CGCG 2 cut(s) 225, 456
BspLI GGNNCC 5 cut(s) 159, 169, 238, 415, 513
BspQI GCTCTTC 1 cut(s) 632
BspT104I TTCGAA 3 cut(s) 268, 806, 858
BspT107I GGYRCC 2 cut(s) 236, 413
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 2 cut(s) 149, 263
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 472, 831
BssMI GATC 2 cut(s) 36, 375
BssNI GRCGYC 2 cut(s) 237, 573
BssT1I CCWWGG 2 cut(s) 99, 831
Bst4CI ACNGT 3 cut(s) 568, 725, 815
Bst6I CTCTTC 3 cut(s) 289, 632, 703
BstACI GRCGYC 2 cut(s) 237, 573
BstAPI GCANNNNNTGC 1 cut(s) 739
BstAUI TGTACA 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 303
BstBI TTCGAA 3 cut(s) 268, 806, 858
BstC8I GCNNGC 3 cut(s) 188, 215, 487
BstDSI CCRYGG 2 cut(s) 472, 831
BstF5I GGATG 2 cut(s) 75, 788
BstFNI CGCG 2 cut(s) 225, 456
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 3 cut(s) 227, 239, 458
BstKTI GATC 2 cut(s) 39, 378
BstMBI GATC 2 cut(s) 36, 375
BstMCI CGRYCG 1 cut(s) 454
BstMWI GCNNNNNNNGC 5 cut(s) 231, 434, 443, 560, 739
BstPAI GACNNNNGTC 1 cut(s) 677
BstUI CGCG 2 cut(s) 225, 456
BstV1I GCAGC 1 cut(s) 726
BstXI CCANNNNNNTGG 1 cut(s) 523
BsuRI GGCC 3 cut(s) 563, 617, 830
BtgI CCRYGG 2 cut(s) 472, 831
BtsCI GGATG 2 cut(s) 75, 788
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 188, 215, 487
CaiI CAGNNNCTG 1 cut(s) 739
CfoI GCGC 3 cut(s) 227, 239, 458
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 511, 815
CpoI CGGWCCG 1 cut(s) 815
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 304, 331, 481
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CspI CGGWCCG 1 cut(s) 815
CviAII CATG 1 cut(s) 832
CviQI GTAC 3 cut(s) 304, 331, 481
DinI GGCGCC 1 cut(s) 238
DpnI GATC 2 cut(s) 38, 377
DpnII GATC 2 cut(s) 36, 375
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 3 cut(s) 289, 632, 703
EarI CTCTTC 3 cut(s) 289, 632, 703
EciI GGCGGA 2 cut(s) 173, 851
Eco130I CCWWGG 2 cut(s) 99, 831
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 511, 815
Eco88I CYCGRG 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 2 cut(s) 784, 854
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 831
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 99, 831
FaeI CATG 1 cut(s) 835
FaiI YATR 1 cut(s) 833
FalI AAGNNNNNCTT 4 cut(s) 268, 300, 868, 900
FatI CATG 1 cut(s) 831
FauI CCCGC 3 cut(s) 230, 254, 600
FblI GTMKAC 2 cut(s) 177, 570
Fnu4HI GCNGC 6 cut(s) 88, 235, 435, 438, 459, 740
FokI GGATG 2 cut(s) 62, 775
Fsp4HI GCNGC 6 cut(s) 88, 235, 435, 438, 459, 740
FspBI CTAG 2 cut(s) 164, 308
GlaI GCGC 3 cut(s) 226, 238, 457
GluI GCNGC 6 cut(s) 88, 235, 435, 438, 459, 740
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 3 cut(s) 563, 617, 830
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 227, 239, 458
Hin1I GRCGYC 2 cut(s) 237, 573
Hin1II CATG 1 cut(s) 835
Hin6I GCGC 3 cut(s) 225, 237, 456
HinP1I GCGC 3 cut(s) 225, 237, 456
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 6 cut(s) 104, 270, 381, 402, 580, 683
HpaII CCGG 1 cut(s) 84
HphI GGTGA 4 cut(s) 14, 31, 613, 741
Hpy166II GTNNAC 3 cut(s) 178, 571, 869
Hpy188I TCNGA 6 cut(s) 157, 255, 380, 597, 769, 819
Hpy188III TCNNGA 2 cut(s) 34, 202
Hpy8I GTNNAC 3 cut(s) 178, 571, 869
Hpy99I CGWCG 7 cut(s) 259, 572, 575, 706, 725, 802, 815
HpyAV CCTTC 5 cut(s) 260, 592, 764, 854, 894
HpyCH4III ACNGT 3 cut(s) 568, 725, 815
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 13, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 434, 443, 560, 739
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 2 cut(s) 237, 573
Hsp92II CATG 1 cut(s) 835
HspAI GCGC 3 cut(s) 225, 237, 456
KasI GGCGCC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 36, 375
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 6 cut(s) 157, 173, 284, 299, 474, 736
Lsp1109I GCAGC 1 cut(s) 726
MaeI CTAG 2 cut(s) 164, 308
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 191, 670, 747
MalI GATC 2 cut(s) 38, 377
MboI GATC 2 cut(s) 36, 375
MboII GAAGA 7 cut(s) 103, 276, 334, 634, 649, 684, 690
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 3 cut(s) 784, 854, 922
MluNI TGGCCA 1 cut(s) 830
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 3 cut(s) 98, 375, 411
MmeI TCCRAC 3 cut(s) 93, 278, 747
Mox20I TGGCCA 1 cut(s) 830
MroXI GAANNNNTTC 1 cut(s) 883
MscI TGGCCA 1 cut(s) 830
MseI TTAA 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 830
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 885
MvnI CGCG 2 cut(s) 225, 456
MwoI GCNNNNNNNGC 5 cut(s) 231, 434, 443, 560, 739
NarI GGCGCC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 831
NdeII GATC 2 cut(s) 36, 375
NlaIII CATG 1 cut(s) 835
NlaIV GGNNCC 5 cut(s) 159, 169, 238, 415, 513
NmeAIII GCCGAG 2 cut(s) 390, 397
NmuCI GTSAC 3 cut(s) 191, 670, 747
NspV TTCGAA 3 cut(s) 268, 806, 858
PaeR7I CTCGAG 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 632
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 237, 417, 426
PctI GAATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 883
PfeI GAWTC 3 cut(s) 270, 580, 683
PflFI GACNNNGTC 1 cut(s) 763
PkrI GCNGC 6 cut(s) 89, 236, 436, 439, 460, 741
PleI GAGTC 3 cut(s) 98, 375, 410
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 3 cut(s) 98, 375, 410
Ppu21I YACGTR 1 cut(s) 303
PpuMI RGGWCCY 1 cut(s) 511
PshAI GACNNNNGTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 523
PspN4I GGNNCC 5 cut(s) 159, 169, 238, 415, 513
PspPI GGNCC 2 cut(s) 511, 815
PspPPI RGGWCCY 1 cut(s) 511
PspXI VCTCGAGB 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 739
PsyI GACNNNGTC 1 cut(s) 763
RsaI GTAC 3 cut(s) 305, 332, 482
RsaNI GTAC 3 cut(s) 304, 331, 481
Rsr2I CGGWCCG 1 cut(s) 815
RsrII CGGWCCG 1 cut(s) 815
SalI GTCGAC 1 cut(s) 569
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 6 cut(s) 88, 235, 435, 438, 459, 740
Sau3AI GATC 2 cut(s) 36, 375
Sau96I GGNCC 2 cut(s) 511, 815
SchI GAGTC 3 cut(s) 98, 375, 411
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 541
SfuI TTCGAA 3 cut(s) 268, 806, 858
SgrDI CGTCGACG 1 cut(s) 569
SinI GGWCC 2 cut(s) 511, 815
SlaI CTCGAG 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 506, 541
SmoI CTYRAG 2 cut(s) 506, 541
Sse9I AATT 3 cut(s) 784, 854, 922
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 2 cut(s) 164, 308
StyI CCWWGG 2 cut(s) 99, 831
TaaI ACNGT 3 cut(s) 568, 725, 815
TaiI ACGT 1 cut(s) 305
TaqI TCGA 7 cut(s) 33, 268, 542, 570, 681, 806, 858
TasI AATT 3 cut(s) 784, 854, 922
TatI WGTACW 1 cut(s) 330
TauI GCSGC 5 cut(s) 90, 237, 437, 440, 461
TfiI GAWTC 3 cut(s) 270, 580, 683
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 3 cut(s) 191, 670, 747
TseI GCWGC 1 cut(s) 739
Tsp45I GTSAC 3 cut(s) 191, 670, 747
TspDTI ATGAA 3 cut(s) 48, 777, 876
TspGWI ACGGA 3 cut(s) 44, 163, 461
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 511, 815
XapI RAATTY 2 cut(s) 784, 854
XcmI CCANNNNNNNNNTGG 2 cut(s) 838, 903
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 177, 570
XmnI GAANNNNTTC 1 cut(s) 883
XspI CTAG 2 cut(s) 164, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.