AT1G64450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012210
Physical Location & Seq
Reverse (-)
23941598 .. 23942900
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G64450.1

Sequence Viewer

Length: 1029 bp
ATGGCCAAGCCTCACGATCGTCGCCGTTCTTCCGGCAGAACTAATTTAGCTTCTTGCGCCGTCGCCACCGTCTTCTTACTCATCTTACTCGTTGTTCTCCTTGTCGTTTACTTCACAGTCTTCAAACCAAAAGACCCCAAGATCTCCGTTAACGCCGTCCAACTCCCCTCATTCGCCGTCTCAAACAATACCGCTAACTTCTCCTTCTCTCAGTACGTCGCCGTTAGAAACCCTAACCGTGCCGTTTTCTCTCATTACGACAGCTCTATTCAGCTTCTTTATTCGGGTAATCAAGTCGGGTTTATGTTCATACCCGCCGGTAAAATTGATTCGGGTCGGATTCAATACATGGCCGCCACTTTTACCGTTCATTCTTTCCCTATTTCTCCTCCTTCCTCCTCCGCTATCTCCACCGTCTCTGCCGCCGTTATTCCAGACTCTCCGATTATTCCCGGTCCACCGGATTTCACTGTAACTCCAAGAAACCCAGATTCACCGTATTTTCCAGGATATCCAGAATCGCCGGATTTACCGGGAAATCCAGGTTCACCGGATTTTTCTGGGAATCCGGGTCCTCCGAGTTTCCCGAGAAATCCAGGCTCGCCGGAGTTTCCAGGAAACCCAGGAGCTCCGATTATACCGAGAAATCCAGGCTCGCCGGAATTTCCAATAAATCCACCGAGAAATCCAGGTGCTCCGGTGATTCCGAGAAACCCAAATCCACCGGTTTTTCCAGGTAACCCGAGAAGCATGGGTCCACCGGGGTTTCCTGGAATCGGAGGTCCGCCGGGATTTCCGGGTACGCCATTCGGCGGAGGAGGGACGGGGCCAACGCTAGGAGATGGATATGCGAATCCGGGTTTCGGGTATGGGAATCGGGTCGGACCAACAATGGAGATAGAGTCGAAGATGGAGTTAGCGGGTCGGGTCAAAGTGCTGCACGTGTTCACACATCACGTGGTTGCTAAATCGGATTGTCGAGTCACCGTCTCTATTGCCGATGGTTCCGTCTTGGGTTTCCATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

342

Amino Acids

35.89

Weight (kDa)

9.32

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 192, 315, 354, 402, 423, 785, 813, 920
AcoI YGGCCR 2 cut(s) 3, 351
AcsI RAATTY 1 cut(s) 662
AcvI CACGTG 2 cut(s) 943, 958
AfaI GTAC 2 cut(s) 215, 802
AfiI CCNNNNNNNGG 4 cut(s) 776, 812, 836, 863
AflIII ACRYGT 1 cut(s) 942
AgeI ACCGGT 1 cut(s) 724
AgsI TTSAA 2 cut(s) 124, 344
AjnI CCWGG 9 cut(s) 505, 541, 595, 613, 622, 649, 688, 733, 769
AluBI AGCT 4 cut(s) 50, 264, 274, 629
AluI AGCT 4 cut(s) 50, 264, 274, 629
Alw21I GWGCWC 2 cut(s) 631, 697
Alw26I GTCTC 3 cut(s) 184, 421, 994
Ama87I CYCGRG 2 cut(s) 586, 742
AoxI GGCC 3 cut(s) 3, 351, 827
ApeKI GCWGC 1 cut(s) 937
ApoI RAATTY 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 724
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 6 cut(s) 455, 572, 755, 782, 827, 884
AsuC2I CCSGG 7 cut(s) 453, 534, 570, 762, 789, 798, 858
AsuHPI GGTGA 4 cut(s) 486, 540, 712, 976
AvaI CYCGRG 2 cut(s) 586, 742
AvaII GGWCC 5 cut(s) 455, 572, 755, 782, 884
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 631
BbrPI CACGTG 2 cut(s) 943, 958
BbsI GAAGAC 2 cut(s) 64, 112
Bbv12I GWGCWC 2 cut(s) 631, 697
BbvI GCAGC 1 cut(s) 924
BccI CCATC 3 cut(s) 836, 904, 995
BceAI ACGGC 7 cut(s) 9, 44, 140, 161, 206, 227, 410
BciT130I CCWGG 9 cut(s) 507, 543, 597, 615, 624, 651, 690, 735, 771
BcnI CCSGG 7 cut(s) 453, 534, 570, 762, 789, 798, 858
BcoDI GTCTC 3 cut(s) 184, 421, 994
BfaI CTAG 1 cut(s) 836
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 354, 423, 938
BlsI GCNGC 3 cut(s) 355, 424, 939
Bme18I GGWCC 5 cut(s) 455, 572, 755, 782, 884
BmeT110I CYCGRG 2 cut(s) 586, 742
BmgT120I GGNCC 6 cut(s) 455, 572, 755, 782, 827, 884
BmiI GGNNCC 4 cut(s) 573, 756, 828, 1006
BpiI GAAGAC 2 cut(s) 64, 112
BpuMI CCSGG 7 cut(s) 453, 534, 570, 762, 789, 798, 858
BsaAI YACGTR 2 cut(s) 943, 958
BsaJI CCNNGG 2 cut(s) 622, 761
BsaWI WCCGGW 4 cut(s) 460, 550, 697, 724
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 887, 917
Bsc4I CCNNNNNNNGG 4 cut(s) 776, 812, 836, 863
Bse118I RCCGGY 2 cut(s) 317, 724
Bse3DI GCAATG 1 cut(s) 1021
BseBI CCWGG 9 cut(s) 507, 543, 597, 615, 624, 651, 690, 735, 771
BseDI CCNNGG 2 cut(s) 622, 761
BseLI CCNNNNNNNGG 4 cut(s) 776, 812, 836, 863
BseMI GCAATG 1 cut(s) 1021
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 378, 388, 831
BseXI GCAGC 1 cut(s) 924
BsgI GTGCAG 1 cut(s) 923
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 3 cut(s) 5, 353, 829
BshTI ACCGGT 1 cut(s) 724
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 631, 697
BsiHKCI CYCGRG 2 cut(s) 586, 742
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 4 cut(s) 776, 812, 836, 863
BsmAI GTCTC 3 cut(s) 184, 421, 994
BsmBI CGTCTC 3 cut(s) 184, 421, 994
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 3 cut(s) 5, 353, 829
BsoBI CYCGRG 2 cut(s) 586, 742
Bsp1286I GDGCHC 2 cut(s) 631, 697
Bsp143I GATC 2 cut(s) 16, 141
BspACI CCGC 8 cut(s) 192, 315, 354, 402, 423, 785, 813, 920
BspANI GGCC 3 cut(s) 5, 353, 829
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 573, 756, 828, 1006
BsrDI GCAATG 1 cut(s) 1021
BsrFI RCCGGY 2 cut(s) 317, 724
BssAI RCCGGY 2 cut(s) 317, 724
BssECI CCNNGG 2 cut(s) 622, 761
BssMI GATC 2 cut(s) 16, 141
Bst2UI CCWGG 9 cut(s) 507, 543, 597, 615, 624, 651, 690, 735, 771
Bst4CI ACNGT 8 cut(s) 70, 118, 239, 367, 415, 472, 498, 988
BstBAI YACGTR 2 cut(s) 943, 958
BstC8I GCNNGC 2 cut(s) 602, 656
BstDEI CTNAG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 737
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 19, 144
BstMAI GTCTC 3 cut(s) 184, 421, 994
BstMBI GATC 2 cut(s) 16, 141
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 9 cut(s) 507, 543, 597, 615, 624, 651, 690, 735, 771
BstPI GGTNACC 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 924
BstV2I GAAGAC 2 cut(s) 64, 112
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 3 cut(s) 5, 353, 829
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 602, 656
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 317, 724
Cfr13I GGNCC 6 cut(s) 455, 572, 755, 782, 827, 884
Csp6I GTAC 2 cut(s) 214, 801
CspAI ACCGGT 1 cut(s) 724
CviAII CATG 2 cut(s) 349, 751
CviQI GTAC 2 cut(s) 214, 801
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 18, 143
DpnII GATC 2 cut(s) 16, 141
EaeI YGGCCR 2 cut(s) 3, 351
EciI GGCGGA 2 cut(s) 774, 828
Ecl136II GAGCTC 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 631
Eco32I GATATC 1 cut(s) 512
Eco47I GGWCC 5 cut(s) 455, 572, 755, 782, 884
Eco53kI GAGCTC 1 cut(s) 629
Eco72I CACGTG 2 cut(s) 943, 958
Eco88I CYCGRG 2 cut(s) 586, 742
Eco91I GGTNACC 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 737
EcoRII CCWGG 9 cut(s) 505, 541, 595, 613, 622, 649, 688, 733, 769
EcoRV GATATC 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 631
Esp3I CGTCTC 3 cut(s) 184, 421, 994
FaeI CATG 2 cut(s) 352, 754
FaiI YATR 7 cut(s) 305, 311, 350, 638, 752, 849, 870
FaqI GGGAC 1 cut(s) 835
FatI CATG 2 cut(s) 348, 750
FauI CCCGC 2 cut(s) 322, 913
Fnu4HI GCNGC 3 cut(s) 354, 423, 938
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 3 cut(s) 354, 423, 938
FspBI CTAG 1 cut(s) 836
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 354, 423, 938
HaeIII GGCC 3 cut(s) 5, 353, 829
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 352, 754
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaI GTTAAC 1 cut(s) 151
HphI GGTGA 4 cut(s) 486, 540, 712, 976
Hpy166II GTNNAC 6 cut(s) 109, 151, 458, 548, 758, 948
Hpy188I TCNGA 8 cut(s) 339, 444, 579, 633, 708, 779, 884, 973
Hpy188III TCNNGA 4 cut(s) 14, 434, 515, 586
Hpy8I GTNNAC 6 cut(s) 109, 151, 458, 548, 758, 948
Hpy99I CGWCG 3 cut(s) 24, 65, 221
HpyAV CCTTC 2 cut(s) 214, 402
HpyCH4III ACNGT 8 cut(s) 70, 118, 239, 367, 415, 472, 498, 988
HpyCH4IV ACGT 3 cut(s) 216, 942, 957
HpyCH4V TGCA 1 cut(s) 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 3 cut(s) 216, 942, 957
Hsp92II CATG 2 cut(s) 352, 754
HspAI GCGC 1 cut(s) 57
KspAI GTTAAC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 16, 141
LmnI GCTCC 3 cut(s) 626, 634, 700
Lsp1109I GCAGC 1 cut(s) 924
MaeI CTAG 1 cut(s) 836
MaeII ACGT 3 cut(s) 216, 942, 957
MaeIII GTNAC 3 cut(s) 472, 737, 982
MalI GATC 2 cut(s) 18, 143
MboI GATC 2 cut(s) 16, 141
MboII GAAGA 4 cut(s) 21, 64, 112, 919
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 631, 697
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 43, 324, 662
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 431, 911, 990
MmeI TCCRAC 3 cut(s) 184, 317, 862
MnlI CCTC 9 cut(s) 21, 178, 399, 406, 409, 585, 773, 809, 812
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 5
MvaI CCWGG 9 cut(s) 507, 543, 597, 615, 624, 651, 690, 735, 771
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 7 cut(s) 453, 534, 570, 762, 789, 798, 858
NdeII GATC 2 cut(s) 16, 141
NlaIII CATG 2 cut(s) 352, 754
NlaIV GGNNCC 4 cut(s) 573, 756, 828, 1006
NmuCI GTSAC 1 cut(s) 982
PfeI GAWTC 9 cut(s) 329, 340, 491, 518, 565, 703, 774, 853, 874
PfoI TCCNGGA 3 cut(s) 505, 613, 769
PinAI ACCGGT 1 cut(s) 724
PkrI GCNGC 3 cut(s) 355, 424, 939
Ple19I CGATCG 1 cut(s) 19
PleI GAGTC 3 cut(s) 431, 910, 989
PmaCI CACGTG 2 cut(s) 943, 958
PmlI CACGTG 2 cut(s) 943, 958
PpsI GAGTC 3 cut(s) 431, 910, 989
Ppu21I YACGTR 2 cut(s) 943, 958
PpuMI RGGWCCY 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 572
Psp6I CCWGG 9 cut(s) 505, 541, 595, 613, 622, 649, 688, 733, 769
PspCI CACGTG 2 cut(s) 943, 958
PspEI GGTNACC 1 cut(s) 737
PspGI CCWGG 9 cut(s) 505, 541, 595, 613, 622, 649, 688, 733, 769
PspN4I GGNNCC 4 cut(s) 573, 756, 828, 1006
PspPI GGNCC 6 cut(s) 455, 572, 755, 782, 827, 884
PspPPI RGGWCCY 1 cut(s) 572
PsuI RGATCY 1 cut(s) 141
PvuI CGATCG 1 cut(s) 19
RsaI GTAC 2 cut(s) 215, 802
RsaNI GTAC 2 cut(s) 214, 801
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 354, 423, 938
Sau3AI GATC 2 cut(s) 16, 141
Sau96I GGNCC 6 cut(s) 455, 572, 755, 782, 827, 884
SchI GAGTC 3 cut(s) 431, 911, 990
SduI GDGCHC 2 cut(s) 631, 697
SinI GGWCC 5 cut(s) 455, 572, 755, 782, 884
Sse9I AATT 3 cut(s) 43, 324, 662
SsiI CCGC 8 cut(s) 192, 315, 354, 402, 423, 785, 813, 920
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 631
TaaI ACNGT 8 cut(s) 70, 118, 239, 367, 415, 472, 498, 988
TaiI ACGT 3 cut(s) 219, 945, 960
TaqI TCGA 2 cut(s) 905, 979
TasI AATT 3 cut(s) 43, 324, 662
TauI GCSGC 2 cut(s) 356, 425
TfiI GAWTC 9 cut(s) 329, 340, 491, 518, 565, 703, 774, 853, 874
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 1 cut(s) 937
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 2 cut(s) 298, 359
TspGWI ACGGA 2 cut(s) 136, 997
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 5 cut(s) 455, 572, 755, 782, 884
XapI RAATTY 1 cut(s) 662
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.