Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Reverse (-)

12118198 .. 12118831

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCAAGCCTCGGACTCAGAGGCCCAAACCTCCACCTTCTGGTCGCACAAACCTCGCCTCCTGCATCGTCGCCACAATTTTCCTAATTTTCGTCGTCATCGTCATCCTCATAGTCTACTTCACCGTCTTCAAGCCCAAAGACCCCAAAATCTCCGTCAGCGCCGTCCAGCTCCCCTCCTTCTCCATCCAAAACTCAACCGTCAACTTCACCTTTGCCCAATACGTCGGCGTTCGGAACCCGAACAGGGCAGCTTTCAGCCACTTCGACAGTAGCCTTCAGCTTCTTTACTCCGGAAACCAAGTCGGGTTCATGTTCATACCCGCCGGCAAGATCGAAGCGGGTCAGACCCAGTTCATGGCCGCCACTTTTGCAGTTCAGTCGTTCCCGGTTAACGATCCTAATCGGGCTGTCGGGTTGGTCCAGAACCCGTTGGGGCCCACGTTCGGGGACGGGTACAGTGGGTTGAGTGGCGCCGGCGGACCCACGATGGAGATTGAGTCGAGGTTGCAGATGGCGGGTCGGATTCGGGTCATGCACTTCTTCACTCACCATGTGGAAGCTAAATCTGGGTGTAGAGTTGTGATTTCTGTGAATGATGGGTCTGTGTTGGGTTTTCATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

209

Amino Acids

22.53

Weight (kDa)

9.81

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	2 cut(s)	41, 358
AccI	GTMKAC	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	5 cut(s)	324, 341, 363, 480, 518
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	556
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	5 cut(s)	41, 247, 358, 446, 447
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	4 cut(s)	172, 254, 283, 563
AluI	AGCT	4 cut(s)	172, 254, 283, 563
AlwI	GGATC	1 cut(s)	392
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	3 cut(s)	23, 360, 437
ApaI	GGGCCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	2 cut(s)	164, 476
AspS9I	GGNCC	5 cut(s)	24, 421, 437, 438, 482
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	115, 202, 542
AvaII	GGWCC	2 cut(s)	421, 482
BaeGI	GKGCMC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	4 cut(s)	194, 484, 508, 593
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 363, 397
BcnI	CCSGG	1 cut(s)	389
BfoI	RGCGCY	2 cut(s)	165, 477
BisI	GCNGC	2 cut(s)	252, 363
BlsI	GCNGC	2 cut(s)	253, 364
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	2 cut(s)	421, 482
BmgT120I	GGNCC	5 cut(s)	24, 421, 437, 438, 482
BmiI	GGNNCC	5 cut(s)	239, 438, 439, 475, 484
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	121
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 485, 515
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 247, 358, 446, 447
Bse118I	RCCGGY	2 cut(s)	326, 476
Bse1I	ACTGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	105, 186
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	5 cut(s)	41, 247, 358, 446, 447
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	3 cut(s)	25, 362, 439
BshNI	GGYRCC	1 cut(s)	473
BsiSI	CCGG	4 cut(s)	294, 327, 389, 477
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	5 cut(s)	41, 247, 358, 446, 447
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	25, 362, 439
Bsp120I	GGGCCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	333, 397
BspACI	CCGC	5 cut(s)	324, 341, 363, 480, 518
BspANI	GGCC	3 cut(s)	25, 362, 439
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	5 cut(s)	239, 438, 439, 475, 484
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	326, 476
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	2 cut(s)	326, 476
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	333, 397
BssNI	GRCGYC	1 cut(s)	474
Bst4CI	ACNGT	4 cut(s)	127, 202, 272, 461
BstACI	GRCGYC	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	8, 328, 478
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	105, 186
BstH2I	RGCGCY	2 cut(s)	165, 477
BstHHI	GCGC	2 cut(s)	164, 476
BstKTI	GATC	2 cut(s)	336, 400
BstMBI	GATC	2 cut(s)	333, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	25, 362, 439
BtsCI	GGATG	2 cut(s)	105, 186
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	3 cut(s)	8, 328, 478
CfoI	GCGC	2 cut(s)	164, 476
Cfr10I	RCCGGY	2 cut(s)	326, 476
Cfr13I	GGNCC	5 cut(s)	24, 421, 437, 438, 482
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	4 cut(s)	313, 358, 535, 554
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	18
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	2 cut(s)	335, 399
DpnII	GATC	2 cut(s)	333, 397
DraIII	CACNNNGTG	1 cut(s)	556
EaeI	YGGCCR	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	421, 482
Eco57I	CTGAAG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
FaeI	CATG	4 cut(s)	316, 361, 538, 557
FaiI	YATR	6 cut(s)	113, 314, 320, 359, 536, 555
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	4 cut(s)	312, 357, 534, 553
FauI	CCCGC	3 cut(s)	331, 334, 511
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	252, 363
FokI	GGATG	2 cut(s)	92, 173
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	2 cut(s)	252, 363
GlaI	GCGC	2 cut(s)	163, 475
GluI	GCNGC	2 cut(s)	252, 363
HaeII	RGCGCY	2 cut(s)	165, 477
HaeIII	GGCC	3 cut(s)	25, 362, 439
HapII	CCGG	4 cut(s)	294, 327, 389, 477
HhaI	GCGC	2 cut(s)	164, 476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	316, 361, 538, 557
Hin6I	GCGC	2 cut(s)	162, 474
HinP1I	GCGC	2 cut(s)	162, 474
HincII	GTYRAC	2 cut(s)	205, 394
HindII	GTYRAC	2 cut(s)	205, 394
HinfI	GANTC	3 cut(s)	16, 500, 526
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	4 cut(s)	294, 327, 389, 477
HphI	GGTGA	3 cut(s)	115, 202, 542
Hpy166II	GTNNAC	3 cut(s)	118, 205, 394
Hpy188I	TCNGA	5 cut(s)	15, 21, 237, 348, 525
Hpy188III	TCNNGA	2 cut(s)	294, 424
Hpy8I	GTNNAC	3 cut(s)	118, 205, 394
Hpy99I	CGWCG	3 cut(s)	74, 98, 230
HpyAV	CCTTC	3 cut(s)	48, 190, 287
HpyCH4III	ACNGT	4 cut(s)	127, 202, 272, 461
HpyCH4IV	ACGT	2 cut(s)	225, 443
HpyCH4V	TGCA	4 cut(s)	66, 374, 511, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	225, 443
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	316, 361, 538, 557
HspAI	GCGC	2 cut(s)	162, 474
KasI	GGCGCC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	293
KroI	GCCGGC	2 cut(s)	326, 476
KroNI	GCCGGC	2 cut(s)	328, 478
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	333, 397
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	75
MaeII	ACGT	2 cut(s)	225, 443
MalI	GATC	2 cut(s)	335, 399
MboI	GATC	2 cut(s)	333, 397
MboII	GAAGA	2 cut(s)	121, 535
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	78, 87
Mly113I	GGCGCC	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	10, 509
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	15, 21, 42, 65, 70, 119, 187, 498
MreI	CGCCGGCG	1 cut(s)	476
MroI	TCCGGA	1 cut(s)	293
MroNI	GCCGGC	2 cut(s)	326, 476
MseI	TTAA	1 cut(s)	393
MspI	CCGG	4 cut(s)	294, 327, 389, 477
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	371
NaeI	GCCGGC	2 cut(s)	328, 478
NarI	GGCGCC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	333, 397
NgoMIV	GCCGGC	2 cut(s)	326, 476
NlaIII	CATG	4 cut(s)	316, 361, 538, 557
NlaIV	GGNNCC	5 cut(s)	239, 438, 439, 475, 484
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	2 cut(s)	328, 478
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	2 cut(s)	41, 358
PkrI	GCNGC	2 cut(s)	253, 364
PleI	GAGTC	2 cut(s)	10, 508
PluTI	GGCGCC	1 cut(s)	477
PpsI	GAGTC	2 cut(s)	10, 508
PspN4I	GGNNCC	5 cut(s)	239, 438, 439, 475, 484
PspOMI	GGGCCC	1 cut(s)	437
PspPI	GGNCC	5 cut(s)	24, 421, 437, 438, 482
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	252, 363
Sau3AI	GATC	2 cut(s)	333, 397
Sau96I	GGNCC	5 cut(s)	24, 421, 437, 438, 482
SchI	GAGTC	2 cut(s)	10, 509
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	475
SgrAI	CRCCGGYG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	421, 482
Sse9I	AATT	2 cut(s)	78, 87
SsiI	CCGC	5 cut(s)	324, 341, 363, 480, 518
SspDI	GGCGCC	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	127, 202, 272, 461
TaiI	ACGT	2 cut(s)	228, 446
TaqI	TCGA	3 cut(s)	267, 336, 503
TasI	AATT	2 cut(s)	78, 87
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	301, 307, 346, 608
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	466
Van91I	CCANNNNNTGG	2 cut(s)	41, 358
VpaK11BI	GGWCC	2 cut(s)	421, 482
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.