Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Forward (+)

12042553 .. 12042873

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG147500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTCATCCCGGCCGGCGAAATCGAGCCCGGTCAGACCCAGTACATGGCCGCCACTTTCGCCGTCAATTCCTTCCCCGTTCCGGATCCCAATCTCTCCGGGGCGGTCCAGGGCCCGATGGGCTCCCCCCAGTTCGGCGACGGGCTCAGCGGGTTTCGCGGCGGAGGAGGCGGAGGGCCCACGATGGAGATAGAGTCGAGGCTGCAGATGGCGGGTCGGGTTCGGGTCATGCACTTTTTCACCCACCACGCGGAGGCGAATTCCGGGTGTAGAGTCGCCATTGCTGTGAGTGATGGATCTGTGTTGGGTTTTCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

106

Amino Acids

10.97

Weight (kDa)

5.67

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	2 cut(s)	159, 251
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	8 cut(s)	51, 104, 150, 159, 162, 171, 212, 251
AclWI	GGATC	3 cut(s)	80, 93, 304
AcoI	YGGCCR	2 cut(s)	12, 48
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	5 cut(s)	46, 82, 134, 250, 253
AjnI	CCWGG	1 cut(s)	108
AlwI	GGATC	3 cut(s)	80, 93, 304
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	4 cut(s)	12, 48, 112, 176
ApaI	GGGCCC	2 cut(s)	116, 180
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	5 cut(s)	106, 112, 113, 176, 177
AsuC2I	CCSGG	4 cut(s)	11, 30, 100, 265
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	116, 180
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	5 cut(s)	30, 116, 125, 147, 180
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	4 cut(s)	112, 178, 202, 287
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	4 cut(s)	11, 30, 100, 265
BfmI	CTRYAG	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	3 cut(s)	51, 160, 203
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	52, 161, 204
Bme1390I	CCNGG	5 cut(s)	11, 30, 100, 110, 265
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	5 cut(s)	106, 112, 113, 176, 177
BmiI	GGNNCC	4 cut(s)	87, 114, 124, 178
BmrFI	CCNGG	5 cut(s)	11, 30, 100, 110, 265
BmrI	ACTGGG	2 cut(s)	34, 124
BmuI	ACTGGG	2 cut(s)	34, 124
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuMI	CCSGG	4 cut(s)	11, 30, 100, 265
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	99, 109
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 82, 134, 250, 253
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	40, 130
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	99, 109
BseGI	GGATG	1 cut(s)	6
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	5 cut(s)	46, 82, 134, 250, 253
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	40, 130
BseRI	GAGGAG	1 cut(s)	180
BseSI	GKGCMC	2 cut(s)	116, 180
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	159, 251
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	14, 50, 114, 178
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	6 cut(s)	11, 15, 30, 83, 99, 264
BslI	CCNNNNNNNGG	5 cut(s)	46, 82, 134, 250, 253
BsnI	GGCC	4 cut(s)	14, 50, 114, 178
Bsp120I	GGGCCC	2 cut(s)	112, 176
Bsp1286I	GDGCHC	5 cut(s)	30, 116, 125, 147, 180
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	85, 296
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	8 cut(s)	51, 104, 150, 159, 162, 171, 212, 251
BspANI	GGCC	4 cut(s)	14, 50, 114, 178
BspCNI	CTCAG	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	159, 251
BspLI	GGNNCC	4 cut(s)	87, 114, 124, 178
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	3 cut(s)	80, 93, 304
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	40, 130
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	99, 109
BssMI	GATC	2 cut(s)	85, 296
Bst2UI	CCWGG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	6
BstFNI	CGCG	2 cut(s)	159, 251
BstKTI	GATC	2 cut(s)	88, 299
BstMBI	GATC	2 cut(s)	85, 296
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 120, 156, 168
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	5 cut(s)	9, 28, 98, 108, 263
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	2 cut(s)	116, 180
BstUI	CGCG	2 cut(s)	159, 251
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	85, 296
BstYI	RGATCY	2 cut(s)	85, 296
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	4 cut(s)	14, 50, 114, 178
BtsCI	GGATG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	5 cut(s)	106, 112, 113, 176, 177
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	46, 229
CviJI	RGCY	8 cut(s)	14, 28, 50, 114, 123, 145, 178, 202
CviKI_1	RGCY	8 cut(s)	14, 28, 50, 114, 123, 145, 178, 202
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	87, 298
DpnII	GATC	2 cut(s)	85, 296
EaeI	YGGCCR	2 cut(s)	12, 48
EagI	CGGCCG	1 cut(s)	12
EciI	GGCGGA	2 cut(s)	177, 186
EclXI	CGGCCG	1 cut(s)	12
Eco24I	GRGCYC	5 cut(s)	30, 116, 125, 147, 180
Eco47I	GGWCC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	112, 176
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	5 cut(s)	30, 116, 125, 147, 180
FaeI	CATG	2 cut(s)	49, 232
FaiI	YATR	2 cut(s)	47, 230
FatI	CATG	2 cut(s)	45, 228
FauI	CCCGC	2 cut(s)	143, 205
Fnu4HI	GCNGC	3 cut(s)	51, 160, 203
FriOI	GRGCYC	5 cut(s)	30, 116, 125, 147, 180
Fsp4HI	GCNGC	3 cut(s)	51, 160, 203
GluI	GCNGC	3 cut(s)	51, 160, 203
HaeIII	GGCC	4 cut(s)	14, 50, 114, 178
HapII	CCGG	6 cut(s)	11, 15, 30, 83, 99, 264
Hin1II	CATG	2 cut(s)	49, 232
HinfI	GANTC	2 cut(s)	194, 273
HpaII	CCGG	6 cut(s)	11, 15, 30, 83, 99, 264
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	205, 232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 120, 156, 168
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	49, 232
Kpn2I	TCCGGA	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	85, 296
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	189
MalI	GATC	2 cut(s)	87, 298
MboI	GATC	2 cut(s)	85, 296
MflI	RGATCY	2 cut(s)	85, 296
MhlI	GDGCHC	5 cut(s)	30, 116, 125, 147, 180
MluCI	AATT	2 cut(s)	67, 259
MlyI	GAGTC	2 cut(s)	203, 282
MnlI	CCTC	5 cut(s)	158, 161, 167, 192, 247
MroI	TCCGGA	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	6 cut(s)	11, 15, 30, 83, 99, 264
MspR9I	CCNGG	5 cut(s)	11, 30, 100, 110, 265
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	159, 251
MwoI	GCNNNNNNNGC	4 cut(s)	59, 120, 156, 168
NaeI	GCCGGC	1 cut(s)	16
NciI	CCSGG	4 cut(s)	11, 30, 100, 265
NdeII	GATC	2 cut(s)	85, 296
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	49, 232
NlaIV	GGNNCC	4 cut(s)	87, 114, 124, 178
PdiI	GCCGGC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	52, 161, 204
PleI	GAGTC	2 cut(s)	202, 281
PpsI	GAGTC	2 cut(s)	202, 281
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	87, 114, 124, 178
PspOMI	GGGCCC	2 cut(s)	112, 176
PspPI	GGNCC	5 cut(s)	106, 112, 113, 176, 177
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	85, 296
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	3 cut(s)	51, 160, 203
Sau3AI	GATC	2 cut(s)	85, 296
Sau96I	GGNCC	5 cut(s)	106, 112, 113, 176, 177
SchI	GAGTC	2 cut(s)	203, 282
ScrFI	CCNGG	5 cut(s)	11, 30, 100, 110, 265
SduI	GDGCHC	5 cut(s)	30, 116, 125, 147, 180
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	67, 259
SsiI	CCGC	8 cut(s)	51, 104, 150, 159, 162, 171, 212, 251
StyD4I	CCNGG	5 cut(s)	9, 28, 98, 108, 263
TaqI	TCGA	2 cut(s)	24, 197
TasI	AATT	2 cut(s)	67, 259
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	2 cut(s)	53, 162
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.