Rh2BG537900

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012210
Physical Location & Seq
Reverse (-)
74614079 .. 74614273
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG537900.1

Sequence Viewer

Length: 195 bp
ATGTTCATCCCTCCCAGCAAAATCGAGCCCAGTCAAACCCAGTACATAGCCGCCACTTTCGCCGTCAACTCCTTCCCTGTTTCTGATCCCAATCTTTCCGGGGCGGTCCATGGCCCGATGGTCTCTCCCGAGTTCGGCGACGGTCTGAGTGGATTTAACTGCGGGAGAGGAGGCGGGTCCACGATGGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

64

Amino Acids

6.6

Weight (kDa)

4.5

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 104, 162, 174
AclWI GGATC 1 cut(s) 80
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 106, 113, 177
AsuC2I CCSGG 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 2 cut(s) 106, 177
BanII GRGCYC 1 cut(s) 30
BccI CCATC 2 cut(s) 112, 178
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 127
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 106, 177
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 106, 113, 177
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 100
BmrI ACTGGG 2 cut(s) 24, 34
BmuI ACTGGG 2 cut(s) 24, 34
BpuMI CCSGG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 99, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 30, 40
Bse8I GATNNNNATC 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 99, 109
BseGI GGATG 1 cut(s) 6
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 30, 40
BseRI GAGGAG 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 4 cut(s) 51, 104, 162, 174
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 30, 40
BssECI CCNNGG 2 cut(s) 99, 109
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 6
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 106, 113, 177
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 28, 50, 114
CviKI_1 RGCY 3 cut(s) 28, 50, 114
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 106, 177
Eco88I CYCGRG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 113
FaiI YATR 3 cut(s) 47, 111, 193
FatI CATG 1 cut(s) 109
FauI CCCGC 2 cut(s) 155, 167
Fnu4HI GCNGC 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 113
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 2 cut(s) 67, 180
Hpy188I TCNGA 2 cut(s) 85, 147
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 67, 180
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 28, 43, 53, 90, 112
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 3 cut(s) 21, 161, 164
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 3 cut(s) 106, 113, 177
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 3 cut(s) 106, 113, 177
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 30
SinI GGWCC 2 cut(s) 106, 177
SsiI CCGC 4 cut(s) 51, 104, 162, 174
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 24
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 106, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.