Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Reverse (-)

33594028 .. 33594768

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATCTGCCCCCAGCAATTTCAGGGTGGCGGCGCAGCACAACAGCACTCCAACAAAGTCGGTGAGCAATCATCCATCAGCTACAACCACCATCACCATTACCACAACAGCACTCCAACAGAGTCGCTCGAGAGGCGAGAGTGGCTGGCTTCGTTAGAAGCTCCGTCCAGCTCCCCTCCTTCTCCATCCTCAACTCCACCATCAACTTCACCTTCTCCCAATATGTTGTCGTCCGCAACCCCAGCCGCTCGCCGCCTTCTGCCACAACCACAGCACCAAATTGGCTTCATGTTCATCCCTCCCAGCAAAATCGAGCTCGGTCAGACCCAGTACATAGCCGCCACTTTCGCCGTCAACTCCTTCCCCATCGGATCCCAATCTTTCCGGGGCAATCCATGGCCCGATGGTCTCTCCCGAGTTCGGCGACGGTCTGAGCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

148

Amino Acids

16.13

Weight (kDa)

9.51

Isoelectric Point (pI)

94.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	5 cut(s)	30, 234, 246, 253, 339
AclWI	GGATC	2 cut(s)	366, 379
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	81, 161, 171, 316
AluI	AGCT	4 cut(s)	81, 161, 171, 316
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	366, 379
Ama87I	CYCGRG	2 cut(s)	128, 414
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	399
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	3 cut(s)	74, 86, 201
AvaI	CYCGRG	2 cut(s)	128, 414
BamHI	GGATCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	6 cut(s)	83, 99, 193, 208, 374, 398
BceAI	ACGGC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	31, 36, 246, 253, 339
BlsI	GCNGC	5 cut(s)	32, 37, 247, 254, 340
Bme1390I	CCNGG	1 cut(s)	386
BmeT110I	CYCGRG	2 cut(s)	128, 414
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	385, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	385, 395
BseGI	GGATG	3 cut(s)	71, 185, 294
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	3 cut(s)	12, 241, 302
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	2 cut(s)	128, 414
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	2 cut(s)	128, 414
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	3, 371
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	5 cut(s)	30, 234, 246, 253, 339
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	366, 379
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	385, 395
BssMI	GATC	2 cut(s)	3, 371
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	147, 250
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	71, 185, 294
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	6, 374
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	3, 371
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 142, 242, 347
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	71, 185, 294
Cac8I	GCNNGC	2 cut(s)	147, 250
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	289, 396
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	5, 373
DpnII	GATC	2 cut(s)	3, 371
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	128, 414
EcoICRI	GAGCTC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	292, 399
FaiI	YATR	4 cut(s)	224, 290, 335, 397
FatI	CATG	2 cut(s)	288, 395
Fnu4HI	GCNGC	5 cut(s)	31, 36, 246, 253, 339
FokI	GGATG	3 cut(s)	58, 172, 281
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	31, 36, 246, 253, 339
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	31, 36, 246, 253, 339
GsaI	CCCAGC	3 cut(s)	16, 245, 306
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	292, 399
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	3 cut(s)	74, 86, 201
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	324, 371, 433
Hpy188III	TCNNGA	2 cut(s)	130, 414
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	4 cut(s)	189, 222, 266, 370
HpyCH4III	ACNGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 142, 242, 347
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	292, 399
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	3, 371
LmnI	GCTCC	2 cut(s)	166, 176
LpnPI	CCDG	8 cut(s)	8, 26, 131, 181, 255, 316, 341, 398
Lsp1109I	GCAGC	1 cut(s)	47
MalI	GATC	2 cut(s)	5, 373
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	2 cut(s)	3, 371
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	17, 279
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	75, 140
MnlI	CCTC	4 cut(s)	126, 186, 199, 309
MseI	TTAA	1 cut(s)	442
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	133, 142, 242, 347
NciI	CCSGG	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	3, 371
NlaIII	CATG	2 cut(s)	292, 399
NlaIV	GGNNCC	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	32, 37, 247, 254, 340
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	3 cut(s)	12, 241, 302
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	5 cut(s)	31, 36, 246, 253, 339
Sau3AI	GATC	2 cut(s)	3, 371
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	5 cut(s)	83, 163, 173, 214, 318
Sfr274I	CTCGAG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	17, 279
SsiI	CCGC	5 cut(s)	30, 234, 246, 253, 339
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	129, 312
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	17, 279
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	4 cut(s)	33, 248, 255, 341
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	277, 283
TspGWI	ACGGA	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.