Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000135.1

Orthogroup ID

OG0012210

Physical Location & Seq

Genomic Coordinates Forward (+)

119869 .. 123621

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000135.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgatctgcccccagcaatttcaaggcggcggtgcagcacaacagcactccaacaaagtcggtgagcaatcatccattagctacaaccaccatcaccattaccacaacagcactccaacagagtcgctcgagaggcgagagtggctggcttcgttagaatgtagcggaggaattggaaagtcatcatccatcagccaccaccacagccacacgaccccgtccccaaactttttgattcaaacaacacctgtggcaaatttcaacccagacaaagccaaatccttgagcaagtcattgggtttacttctagattctgaaaaattgtttctgggtttggtggggttgacccaaagaccccaaaatctccatcagctccgtccagctcccctcattctccatcctcaactccaccatcaacttcaccttctcccaatacattctgaaaaattgtttctgggtttggtggggttgacccaaagaccccaaaatctccatcagctcccctccttctccatcctcaactccaccatcaacttcaccttctcccaatacgtcgtcgtccgcaacccagccgctcgccgccttctgccactaccacaacaccaaattggcttcatgttcatccctcccagcaaaatcgagttcgatcagacccagtacatagccgccactttcgccgtcaactccttccccatttcggaccccaatctttccggggcgatccatggcccgatggtctctcccgagttcggcgacggtctgagcagatttaactgcggcggaagaggcgggtattgcaaggaagacagaccagaaagccaattcaaatctgaaacccacatatctaagtatgctgagagaccagcaagtttgataggttcccaagatgacgagggaccattccctcaaaacctgaggtggagaggtcaagaatgcgggcaggtcaagcttgagaacattgcctgggttgctacactagcctaccccagtccacttgcagcagtcttccccaacccaagtagaaagctgaccagaaggatctttaaggccttgtttgtgtttaagaagggccttcctctcctccgcaatgcaagcaacggtgatattcttaaaaccagagttggattttgtggcctcaatgaaaatagagcattgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

386

Amino Acids

42.91

Weight (kDa)

9.47

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64450 AT4G23930 AT4G23930
malus_domestica	MD01G1044000.v1.1 MD06G1108900.v1.1 MD11G1233400.v1.1 MD13G1190600.v1.1 MD14G1129800.v1.1
prunus_persica	Prupe.5G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194471
rosa_laevigata	RLG00000004198 RLG00000013582
rosa_multiflora	Rmu_ssc0000135.1_g000022
rosa_roxburghii	Rroxscaffold_3G00261330
rosa_rugosa	Rorug07G0015900
rosa_samantha	Rh2BG537900 Rh2DG546700 Rh7CG147500
rosa_wichuraiana	Rw7G012260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
AccBSI	CCGCTC	1 cut(s)	575
AclWI	GGATC	2 cut(s)	715, 1046
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	2 cut(s)	697, 749
AgsI	TTSAA	4 cut(s)	23, 239, 262, 826
AjnI	CCWGG	1 cut(s)	962
AluBI	AGCT	6 cut(s)	81, 373, 383, 499, 949, 1027
AluI	AGCT	6 cut(s)	81, 373, 383, 499, 949, 1027
Alw26I	GTCTC	2 cut(s)	742, 853
AlwI	GGATC	2 cut(s)	715, 1046
Ama87I	CYCGRG	2 cut(s)	128, 743
AoxI	GGCC	4 cut(s)	727, 1047, 1069, 1132
ApeKI	GCWGC	2 cut(s)	35, 998
ApoI	RAATTY	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	700, 728, 896, 1069
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	5 cut(s)	74, 86, 413, 529, 1112
AvaI	CYCGRG	2 cut(s)	128, 743
AvaII	GGWCC	2 cut(s)	700, 896
AxyI	CCTNAGG	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	810, 997
BbvI	GCAGC	2 cut(s)	47, 1010
BccI	CCATC	9 cut(s)	99, 197, 375, 405, 420, 501, 521, 536, 727
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	2 cut(s)	742, 853
BfaI	CTAG	2 cut(s)	308, 977
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	7 cut(s)	28, 36, 573, 580, 666, 778, 999
BlsI	GCNGC	7 cut(s)	29, 37, 574, 581, 667, 779, 1000
Bme1390I	CCNGG	2 cut(s)	715, 964
Bme18I	GGWCC	2 cut(s)	700, 896
BmeT110I	CYCGRG	2 cut(s)	128, 743
BmgT120I	GGNCC	4 cut(s)	700, 728, 896, 1069
BmiI	GGNNCC	3 cut(s)	702, 880, 897
BmrFI	CCNGG	2 cut(s)	715, 964
BmrI	ACTGGG	2 cut(s)	649, 981
BmuI	ACTGGG	2 cut(s)	649, 981
BpiI	GAAGAC	2 cut(s)	810, 997
BpuEI	CTTGAG	2 cut(s)	304, 971
BpuMI	CCSGG	1 cut(s)	715
BsaI	GGTCTC	2 cut(s)	742, 853
BsaJI	CCNNGG	3 cut(s)	714, 724, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 749
Bse1I	ACTGG	2 cut(s)	655, 987
Bse21I	CCTNAGG	1 cut(s)	914
Bse3DI	GCAATG	3 cut(s)	957, 1093, 1151
BseBI	CCWGG	1 cut(s)	964
BseDI	CCNNGG	3 cut(s)	714, 724, 963
BseGI	GGATG	5 cut(s)	71, 185, 397, 513, 621
BseLI	CCNNNNNNNGG	2 cut(s)	697, 749
BseMI	GCAATG	3 cut(s)	957, 1093, 1151
BseMII	CTCAG	3 cut(s)	752, 846, 905
BseNI	ACTGG	2 cut(s)	655, 987
BseRI	GAGGAG	1 cut(s)	1070
BseXI	GCAGC	2 cut(s)	47, 1010
BseYI	CCCAGC	3 cut(s)	12, 568, 629
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	729, 1049, 1071, 1134
BsiHKCI	CYCGRG	2 cut(s)	128, 743
BsiSI	CCGG	1 cut(s)	714
BslFI	GGGAC	2 cut(s)	205, 909
BslI	CCNNNNNNNGG	2 cut(s)	697, 749
BsmAI	GTCTC	2 cut(s)	742, 853
BsmFI	GGGAC	2 cut(s)	205, 909
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	4 cut(s)	729, 1049, 1071, 1134
Bso31I	GGTCTC	2 cut(s)	742, 853
BsoBI	CYCGRG	2 cut(s)	128, 743
Bsp143I	GATC	4 cut(s)	3, 646, 720, 1038
Bsp19I	CCATGG	1 cut(s)	724
BspANI	GGCC	4 cut(s)	729, 1049, 1071, 1134
BspCNI	CTCAG	3 cut(s)	753, 847, 906
BspLI	GGNNCC	3 cut(s)	702, 880, 897
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	2 cut(s)	715, 1046
BspTNI	GGTCTC	2 cut(s)	742, 853
BsrBI	CCGCTC	1 cut(s)	575
BsrDI	GCAATG	3 cut(s)	957, 1093, 1151
BsrI	ACTGG	2 cut(s)	655, 987
BssECI	CCNNGG	3 cut(s)	714, 724, 963
BssMI	GATC	4 cut(s)	3, 646, 720, 1038
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	1 cut(s)	964
Bst4CI	ACNGT	2 cut(s)	758, 1100
Bst6I	CTCTTC	1 cut(s)	778
BstC8I	GCNNGC	4 cut(s)	147, 577, 938, 1093
BstDEI	CTNAG	4 cut(s)	761, 846, 855, 914
BstDSI	CCRYGG	1 cut(s)	724
BstF5I	GGATG	5 cut(s)	71, 185, 397, 513, 621
BstKTI	GATC	4 cut(s)	6, 649, 723, 1041
BstMAI	GTCTC	2 cut(s)	742, 853
BstMBI	GATC	4 cut(s)	3, 646, 720, 1038
BstMWI	GCNNNNNNNGC	9 cut(s)	133, 142, 674, 786, 795, 946, 968, 977, 1092
BstNI	CCWGG	1 cut(s)	964
BstSCI	CCNGG	2 cut(s)	713, 962
BstV1I	GCAGC	2 cut(s)	47, 1010
BstV2I	GAAGAC	2 cut(s)	810, 997
BstX2I	RGATCY	1 cut(s)	1038
BstYI	RGATCY	1 cut(s)	1038
Bsu36I	CCTNAGG	1 cut(s)	914
BsuRI	GGCC	4 cut(s)	729, 1049, 1071, 1134
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	5 cut(s)	71, 185, 397, 513, 621
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	4 cut(s)	147, 577, 938, 1093
Cfr13I	GGNCC	4 cut(s)	700, 728, 896, 1069
Csp6I	GTAC	1 cut(s)	658
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviAII	CATG	2 cut(s)	616, 725
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	761, 846, 855, 914
DpnI	GATC	4 cut(s)	5, 648, 722, 1040
DpnII	GATC	4 cut(s)	3, 646, 720, 1038
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
EciI	GGCGGA	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	724
Eco147I	AGGCCT	1 cut(s)	1049
Eco31I	GGTCTC	2 cut(s)	742, 853
Eco47I	GGWCC	2 cut(s)	700, 896
Eco81I	CCTNAGG	1 cut(s)	914
Eco88I	CYCGRG	2 cut(s)	128, 743
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoRII	CCWGG	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	2 cut(s)	619, 728
FaiI	YATR	5 cut(s)	617, 662, 726, 842, 852
FaqI	GGGAC	2 cut(s)	205, 909
FatI	CATG	2 cut(s)	615, 724
FauI	CCCGC	2 cut(s)	782, 929
Fnu4HI	GCNGC	7 cut(s)	28, 36, 573, 580, 666, 778, 999
FokI	GGATG	5 cut(s)	58, 172, 384, 500, 608
Fsp4HI	GCNGC	7 cut(s)	28, 36, 573, 580, 666, 778, 999
FspBI	CTAG	2 cut(s)	308, 977
GluI	GCNGC	7 cut(s)	28, 36, 573, 580, 666, 778, 999
GsaI	CCCAGC	3 cut(s)	16, 572, 633
HaeIII	GGCC	4 cut(s)	729, 1049, 1071, 1134
HapII	CCGG	1 cut(s)	714
Hin1II	CATG	2 cut(s)	619, 728
HincII	GTYRAC	3 cut(s)	345, 471, 682
HindII	GTYRAC	3 cut(s)	345, 471, 682
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	3 cut(s)	122, 235, 311
HpaII	CCGG	1 cut(s)	714
HphI	GGTGA	5 cut(s)	74, 86, 413, 529, 1112
Hpy166II	GTNNAC	5 cut(s)	302, 345, 471, 682, 992
Hpy188I	TCNGA	6 cut(s)	316, 442, 651, 700, 762, 832
Hpy188III	TCNNGA	4 cut(s)	130, 308, 743, 929
Hpy8I	GTNNAC	5 cut(s)	302, 345, 471, 682, 992
Hpy99I	CGWCG	3 cut(s)	557, 560, 758
HpyAV	CCTTC	8 cut(s)	434, 517, 550, 593, 697, 1029, 1060, 1082
HpyCH4III	ACNGT	2 cut(s)	758, 1100
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	35, 798, 998, 1091, 1156
HpyF10VI	GCNNNNNNNGC	9 cut(s)	133, 142, 674, 786, 795, 946, 968, 977, 1092
HpyF3I	CTNAG	4 cut(s)	761, 846, 855, 914
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	619, 728
Kzo9I	GATC	4 cut(s)	3, 646, 720, 1038
LmnI	GCTCC	3 cut(s)	378, 388, 504
Lsp1109I	GCAGC	2 cut(s)	47, 1010
MaeI	CTAG	2 cut(s)	308, 977
MaeII	ACGT	1 cut(s)	552
MalI	GATC	4 cut(s)	5, 648, 722, 1040
MbiI	CCGCTC	1 cut(s)	575
MboI	GATC	4 cut(s)	3, 646, 720, 1038
MboII	GAAGA	3 cut(s)	795, 815, 997
MflI	RGATCY	1 cut(s)	1038
MluCI	AATT	7 cut(s)	17, 171, 256, 320, 446, 606, 821
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	3 cut(s)	75, 140, 1102
MseI	TTAA	4 cut(s)	771, 1044, 1062, 1110
MspI	CCGG	1 cut(s)	714
MspR9I	CCNGG	2 cut(s)	715, 964
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	1 cut(s)	964
MwoI	GCNNNNNNNGC	9 cut(s)	133, 142, 674, 786, 795, 946, 968, 977, 1092
NciI	CCSGG	1 cut(s)	715
NcoI	CCATGG	1 cut(s)	724
NdeII	GATC	4 cut(s)	3, 646, 720, 1038
NlaIII	CATG	2 cut(s)	619, 728
NlaIV	GGNNCC	3 cut(s)	702, 880, 897
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	1049
PctI	GAATGC	1 cut(s)	938
PfeI	GAWTC	2 cut(s)	235, 311
PflFI	GACNNNGTC	1 cut(s)	217
PkrI	GCNGC	7 cut(s)	29, 37, 574, 581, 667, 779, 1000
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	962
PspFI	CCCAGC	3 cut(s)	12, 568, 629
PspGI	CCWGG	1 cut(s)	962
PspN4I	GGNNCC	3 cut(s)	702, 880, 897
PspPI	GGNCC	4 cut(s)	700, 728, 896, 1069
PsuI	RGATCY	1 cut(s)	1038
PsyI	GACNNNGTC	1 cut(s)	217
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SaqAI	TTAA	4 cut(s)	771, 1044, 1062, 1110
SatI	GCNGC	7 cut(s)	28, 36, 573, 580, 666, 778, 999
Sau3AI	GATC	4 cut(s)	3, 646, 720, 1038
Sau96I	GGNCC	4 cut(s)	700, 728, 896, 1069
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	715, 964
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	700, 896
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	128, 283, 950
SmoI	CTYRAG	3 cut(s)	128, 283, 950
Sse9I	AATT	7 cut(s)	17, 171, 256, 320, 446, 606, 821
SseBI	AGGCCT	1 cut(s)	1049
SspMI	CTAG	2 cut(s)	308, 977
StuI	AGGCCT	1 cut(s)	1049
StyD4I	CCNGG	2 cut(s)	713, 962
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	2 cut(s)	758, 1100
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	129, 639, 645
TasI	AATT	7 cut(s)	17, 171, 256, 320, 446, 606, 821
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	5 cut(s)	30, 575, 582, 668, 780
TfiI	GAWTC	2 cut(s)	235, 311
Tru1I	TTAA	4 cut(s)	771, 1044, 1062, 1110
Tru9I	TTAA	4 cut(s)	771, 1044, 1062, 1110
TseI	GCWGC	2 cut(s)	35, 998
TspDTI	ATGAA	3 cut(s)	604, 610, 1155
TspGWI	ACGGA	1 cut(s)	365
Tth111I	GACNNNGTC	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	700, 896
XapI	RAATTY	1 cut(s)	256
XbaI	TCTAGA	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	2 cut(s)	308, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.