Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1239813 .. 1242782

Gene Structure 2970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGCGCGGGAGTTACCGTTTGACACAGTTACAGTACCGCAGCTTCTGCTCAAGCTCAGCCAAAGCCCAGAAACCCATCAACATCAGTTTTGGAAACCCCACTAACCCAAACCCAATCCCAATCCCAATCCCAATCCCAATCCCATGGAAGAAAACAAAGACCCAGAAGCAGAAGAGTTCCATGAATAGGTTATCAAATGCTTCCGACTCGGAAGTTGTTAAATTTAACATGGAAATCAGTACCCAAATGCGCAATGGCCAATGTGAAGAGGCTCTGCGTGTGTTTAATGCAATGGGTCGGAGGAGTTCGGTTTCTTACAATGCTATGATATCTGGGTACTTGGCAAATGGGAAGTTTGATGATGCAAAGGACGTGTTCGACAAAATGCCTGAGAGAGACTTGGTGTCTTGGAATGTGATGCTTAGTGGGTATGTGAGGAATAGGGATCTTGGTGGGGCTCGTGCTTTGTTTGAACGTATGCCGGAAAAGGATGTTGTTTCATGGAATGCTATTTTATCTGGCTATGCCCAGAATGGTTATGTTGATGAGGCGAGGAAGGTTTTTGAAATGATGCCGAGTAAGAATGAGATATCTTGGAATGGGTTGCTAGCGGCTTATGTGCAGAATGGGAGGATAGAAAGTGCTAGGAGATTGTTTGAGTCCAAGGCAGATTGGCAAGCAGTTTCTTGGAATTGTTTGATGGGGGGATTTGTGAAACAAAAGAGATTAGTTGATGCTAGGCAGCTCTTCGAGAGAATGCCTGCGAGGGATGAAGTTTCGTGGAATACTATGATCACAGGGTATGCACAGAATGGGGGAATGTCGGAAGCAAGGAGATTGTTTGAGGAGTCTCCTGTAAGGGATGTCTTTGCGTGGACAGCAATGCTTTCAGGTTGTGTGCAGAATGGGATGTTGGATGAAGCAAGAAGAATTTTTGATGAAATGCCGGAGAAGAATTCGGTTTCGTGGAATGCAATGATTGCAGGGTATGTGCAAGACAAGAGAATGGACATGGCGGTGAAATTGTTTGAGGCAATGCCTTTTAAGAATGTGAGTTCTTGGAATACCATTTTAACTGGCTATGCTCAGAGCGGCGATATTGATGGTGCTAGGAAAGTCTTTAATAGCATGCCTCGGCGTGATTCCATCTCTTGGGCGGCTATCATTGCTGGCCATGCTCAAAATGGTTTCGGTGAAGAGGCTTTGCGTCTATTTGTGGAGATGAAAAGAGATGGGGAACGGCTGACTAGGTCTACATTTTCGTGTGCCTTGAGCACATGTGCTGAAGTTGCTGCTTTAGAGTTGGGGAAGCAATTACATGGGCGTTTAGCAAAAGCAGGATTCGAAAGTGGGTGCTATGTGGGCAATGCACTCCTTGTAATGTACTGCAAGTGTGGATGCATAGAGGAATCATATGATGCGTTCCAAGAAATATCTGAAAAGGATGTTGTCTCGTGGAACACGATGATCTATGGTTATGCAAGGCATGGATTTGGCTTAAAGGCTCTCATGGTTTTCGATTCAATGAAGGCAGCTGGTATTAAACCTGATGAAGTAACAATGGTGGGTGTATTGTCTGCTTGTAGTCATACTGGCTTTGTGGACAGGGGAAGAGAATACTTTCATTCAATGAATCGGGAATATGGCATCACAGCAAATGCAAAACACTATACCTGCCTGATTGATCTTTTAGGTAGAGCTGGGCGCCTGGAAGAAGCGCAGAATTTAATGAGAACGATGCCTTTTGAACCAGATGCTGCAACATGGGGAGCTCTACTTGGCGCAAGCCGCATTCATGGCAATACTGAATTAGGAGAAAAGGCTGCTAAGATAATTTTTGAGATGGAACCTGAAAATGCAGGAATGTATGTTCTTCTCTCAAATTTATATGCTTCTTCAGGCAGATGGGCTGATGTTGGTAGAATGAGATTGAAAATGAGAGATAAAGGTGTCAGGAAAGTTCCTGGATATAGCTGGATTGAAGTGCAAAACAAGATTCACACATTTTCAGTTGGGGACTCTATACACCCAGAGAAGGACAATATATATGCCTTCTTGGAAGAGTTGGATTTGAAAATGAAGCGGGAGGGATATGTTTCATCTACAAAGTTGGTTTTGCACGACGTTGAAGAGGAGGAGAAAGAGCACATGCTGAGGCATCACAGTGAGAAATTGGCTGTGGCATTTGGGATTCTTTCAATTCCAGCAGGGAGGCCAATCCGTGTAATGAAGAACTTGCGAGTATGTGAAGACTGCCACAATGCCATCAAATACATATCCAAGATTGTGGGAAGGACAATAATCTTAAGGGATTCTAACCGCTTCCACCACTTCAGTGAGGGTTCTTGTTCTTGCGGGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

789

Amino Acids

89.0

Weight (kDa)

8.65

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	102 - 132	1e-07	PPR repeat family
PPR	PF01535	104 - 133	1.6e-08	PPR repeat
PPR	PF01535	135 - 164	1.7e-06	PPR repeat
PPR_2	PF13041	163 - 195	3.4e-07	PPR repeat family
PPR_1	PF12854	164 - 191	2e-06	PPR repeat
PPR	PF01535	166 - 195	5.8e-08	PPR repeat
PPR	PF01535	259 - 283	2.8e-06	PPR repeat
PPR_2	PF13041	287 - 319	2e-06	PPR repeat family
PPR	PF01535	291 - 319	3e-08	PPR repeat
PPR_2	PF13041	318 - 351	1.5e-07	PPR repeat family
PPR	PF01535	321 - 349	1.6e-06	PPR repeat
PPR_2	PF13041	349 - 380	1.9e-06	PPR repeat family
PPR	PF01535	353 - 380	6e-06	PPR repeat
PPR_2	PF13041	381 - 428	1.7e-06	PPR repeat family
PPR	PF01535	383 - 412	9.3e-06	PPR repeat
PPR_2	PF13041	481 - 529	1.7e-11	PPR repeat family
PPR	PF01535	484 - 514	7.4e-08	PPR repeat
E_motif	PF20431	599 - 661	2.3e-22	E motif
DYW_deaminase	PF14432	697 - 789	3.9e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	1682
AccB1I	GGYRCC	1 cut(s)	1704
AccB7I	CCANNNNNTGG	1 cut(s)	1152
AccBSI	CCGCTC	1 cut(s)	1092
AccI	GTMKAC	1 cut(s)	1253
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	2 cut(s)	256, 1171
AcsI	RAATTY	5 cut(s)	221, 930, 955, 1723, 1882
AcuI	CTGAAG	3 cut(s)	1305, 1881, 2317
AcyI	GRCGYC	1 cut(s)	1705
AfaI	GTAC	4 cut(s)	35, 241, 338, 1385
AfiI	CCNNNNNNNGG	3 cut(s)	186, 1152, 2035
AflII	CTTAAG	1 cut(s)	2305
AflIII	ACRYGT	2 cut(s)	372, 1277
AhdI	GACNNNNNGTC	1 cut(s)	403
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	1707, 1963
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AleI	CACNNNNGTG	1 cut(s)	2334
AloI	GAACNNNNNNTCC	2 cut(s)	1854, 1886
AluBI	AGCT	7 cut(s)	42, 54, 745, 1535, 1700, 1772, 1974
AluI	AGCT	7 cut(s)	42, 54, 745, 1535, 1700, 1772, 1974
Alw21I	GWGCWC	3 cut(s)	1277, 1774, 2148
Alw26I	GTCTC	3 cut(s)	390, 855, 1456
AlwI	GGATC	1 cut(s)	453
AlwNI	CAGNNNCTG	2 cut(s)	45, 1757
AoxI	GGCC	3 cut(s)	256, 1171, 2213
ApeKI	GCWGC	6 cut(s)	39, 742, 1292, 1532, 1757, 1823
ApoI	RAATTY	5 cut(s)	221, 930, 955, 1723, 1882
Asp700I	GAANNNNTTC	1 cut(s)	1620
AspLEI	GCGC	5 cut(s)	6, 252, 1707, 1720, 1784
AsuHPI	GGTGA	2 cut(s)	1030, 1205
AsuII	TTCGAA	1 cut(s)	1344
AsuNHI	GCTAGC	1 cut(s)	607
BalI	TGGCCA	2 cut(s)	258, 1173
BanI	GGYRCC	1 cut(s)	1704
BanII	GRGCYC	2 cut(s)	460, 1774
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BauI	CACGAG	2 cut(s)	459, 1453
BbsI	GAAGAC	1 cut(s)	2256
Bbv12I	GWGCWC	3 cut(s)	1277, 1774, 2148
BbvCI	CCTCAGC	1 cut(s)	2153
BbvI	GCAGC	6 cut(s)	51, 754, 1279, 1544, 1744, 1810
BccI	CCATC	8 cut(s)	83, 694, 1097, 1154, 1226, 1837, 1899, 2273
BceAI	ACGGC	1 cut(s)	1256
BciT130I	CCWGG	2 cut(s)	1709, 1965
BclI	TGATCA	1 cut(s)	792
BcoDI	GTCTC	3 cut(s)	390, 855, 1456
BfaI	CTAG	5 cut(s)	608, 645, 738, 1110, 1248
BfoI	RGCGCY	1 cut(s)	1708
BfrI	CTTAAG	1 cut(s)	2305
BfuAI	ACCTGC	1 cut(s)	1682
BlpI	GCTNAGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	1709, 1965
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmgBI	CACGTC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	1706, 1848
BmrFI	CCNGG	2 cut(s)	1709, 1965
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	2256
Bpu10I	CCTNAGC	1 cut(s)	2153
Bpu1102I	GCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	1344
BpuEI	CTTGAG	2 cut(s)	34, 1291
BsaHI	GRCGYC	1 cut(s)	1705
BsaJI	CCNNGG	3 cut(s)	143, 663, 1133
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 1152, 2035
Bse1I	ACTGG	2 cut(s)	1081, 1597
Bse3DI	GCAATG	7 cut(s)	259, 297, 888, 981, 1041, 1164, 1372
BseBI	CCWGG	2 cut(s)	1709, 1965
BseDI	CCNNGG	3 cut(s)	143, 663, 1133
BseGI	GGATG	7 cut(s)	496, 775, 868, 915, 922, 1403, 1450
BseLI	CCNNNNNNNGG	3 cut(s)	186, 1152, 2035
BseMI	GCAATG	7 cut(s)	259, 297, 888, 981, 1041, 1164, 1372
BseMII	CTCAG	4 cut(s)	69, 381, 1100, 2144
BseNI	ACTGG	2 cut(s)	1081, 1597
BseRI	GAGGAG	4 cut(s)	316, 860, 2147, 2150
BseXI	GCAGC	6 cut(s)	51, 754, 1279, 1544, 1744, 1810
BseYI	CCCAGC	1 cut(s)	1700
BsgI	GTGCAG	2 cut(s)	641, 920
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	258, 1173, 2215
BshNI	GGYRCC	1 cut(s)	1704
BsiHKAI	GWGCWC	3 cut(s)	1277, 1774, 2148
BsiSI	CCGG	2 cut(s)	482, 947
BslFI	GGGAC	1 cut(s)	2030
BslI	CCNNNNNNNGG	3 cut(s)	186, 1152, 2035
BsmAI	GTCTC	3 cut(s)	390, 855, 1456
BsmFI	GGGAC	1 cut(s)	2030
BsmI	GAATGC	4 cut(s)	511, 762, 976, 1791
BsnI	GGCC	3 cut(s)	258, 1173, 2215
Bsp119I	TTCGAA	1 cut(s)	1344
Bsp1286I	GDGCHC	4 cut(s)	460, 1277, 1774, 2148
Bsp143I	GATC	4 cut(s)	445, 792, 1467, 1684
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	3 cut(s)	258, 1173, 2215
BspCNI	CTCAG	4 cut(s)	68, 382, 1099, 2145
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	1706, 1848
BspMI	ACCTGC	1 cut(s)	1682
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	752
BspT104I	TTCGAA	1 cut(s)	1344
BspT107I	GGYRCC	1 cut(s)	1704
BspTI	CTTAAG	1 cut(s)	2305
BsrBI	CCGCTC	1 cut(s)	1092
BsrDI	GCAATG	7 cut(s)	259, 297, 888, 981, 1041, 1164, 1372
BsrI	ACTGG	2 cut(s)	1081, 1597
BssECI	CCNNGG	3 cut(s)	143, 663, 1133
BssMI	GATC	4 cut(s)	445, 792, 1467, 1684
BssNI	GRCGYC	1 cut(s)	1705
BssSI	CACGAG	2 cut(s)	459, 1453
BssT1I	CCWWGG	2 cut(s)	143, 663
Bst2BI	CACGAG	2 cut(s)	459, 1453
Bst2UI	CCWGG	2 cut(s)	1709, 1965
Bst4CI	ACNGT	4 cut(s)	17, 27, 33, 2165
Bst6I	CTCTTC	7 cut(s)	167, 261, 752, 1191, 1606, 2055, 2124
BstACI	GRCGYC	1 cut(s)	1705
BstAFI	CTTAAG	1 cut(s)	2305
BstAPI	GCANNNNNTGC	2 cut(s)	45, 980
BstBI	TTCGAA	1 cut(s)	1344
BstC8I	GCNNGC	6 cut(s)	609, 678, 762, 1130, 1171, 1786
BstDEI	CTNAG	6 cut(s)	55, 390, 422, 1086, 1827, 2153
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	7 cut(s)	496, 775, 868, 915, 922, 1403, 1450
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	1708
BstHHI	GCGC	5 cut(s)	6, 252, 1707, 1720, 1784
BstKTI	GATC	4 cut(s)	448, 795, 1470, 1687
BstMAI	GTCTC	3 cut(s)	390, 855, 1456
BstMBI	GATC	4 cut(s)	445, 792, 1467, 1684
BstMWI	GCNNNNNNNGC	9 cut(s)	45, 878, 980, 1166, 1175, 1289, 1362, 1788, 1797
BstNI	CCWGG	2 cut(s)	1709, 1965
BstNSI	RCATGY	3 cut(s)	1132, 1281, 2152
BstSCI	CCNGG	2 cut(s)	1707, 1963
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	51, 754, 1279, 1544, 1744, 1810
BstV2I	GAAGAC	1 cut(s)	2256
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	2 cut(s)	144, 2287
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	258, 1173, 2215
BtgI	CCRYGG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	7 cut(s)	496, 775, 868, 915, 922, 1403, 1450
BtsIMutI	CAGTG	2 cut(s)	2170, 2341
BveI	ACCTGC	1 cut(s)	1682
Cac8I	GCNNGC	6 cut(s)	609, 678, 762, 1130, 1171, 1786
CaiI	CAGNNNCTG	2 cut(s)	45, 1757
CfoI	GCGC	5 cut(s)	6, 252, 1707, 1720, 1784
CseI	GACGC	1 cut(s)	1196
Csp6I	GTAC	4 cut(s)	34, 240, 337, 1384
CviQI	GTAC	4 cut(s)	34, 240, 337, 1384
DdeI	CTNAG	6 cut(s)	55, 390, 422, 1086, 1827, 2153
DinI	GGCGCC	1 cut(s)	1706
DpnI	GATC	4 cut(s)	447, 794, 1469, 1686
DpnII	GATC	4 cut(s)	445, 792, 1467, 1684
DriI	GACNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	256, 1171
Eam1104I	CTCTTC	7 cut(s)	167, 261, 752, 1191, 1606, 2055, 2124
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	7 cut(s)	167, 261, 752, 1191, 1606, 2055, 2124
Ecl136II	GAGCTC	1 cut(s)	1772
Eco130I	CCWWGG	2 cut(s)	143, 663
Eco24I	GRGCYC	2 cut(s)	460, 1774
Eco32I	GATATC	2 cut(s)	330, 591
Eco53kI	GAGCTC	1 cut(s)	1772
Eco57I	CTGAAG	3 cut(s)	1305, 1881, 2317
EcoICRI	GAGCTC	1 cut(s)	1772
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	1707, 1963
EcoRV	GATATC	2 cut(s)	330, 591
EcoT14I	CCWWGG	2 cut(s)	143, 663
EcoT22I	ATGCAT	1 cut(s)	1403
EcoT38I	GRGCYC	2 cut(s)	460, 1774
EgeI	GGCGCC	1 cut(s)	1706
EheI	GGCGCC	1 cut(s)	1706
ErhI	CCWWGG	2 cut(s)	143, 663
FaqI	GGGAC	1 cut(s)	2030
FauI	CCCGC	2 cut(s)	2076, 2348
FauNDI	CATATG	1 cut(s)	1414
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	1253
FokI	GGATG	7 cut(s)	503, 782, 875, 922, 929, 1410, 1457
FriOI	GRGCYC	2 cut(s)	460, 1774
FspBI	CTAG	5 cut(s)	608, 645, 738, 1110, 1248
FspI	TGCGCA	1 cut(s)	251
GlaI	GCGC	5 cut(s)	5, 251, 1706, 1719, 1783
GsaI	CCCAGC	1 cut(s)	1704
HaeII	RGCGCY	1 cut(s)	1708
HaeIII	GGCC	3 cut(s)	258, 1173, 2215
HapII	CCGG	2 cut(s)	482, 947
HgaI	GACGC	1 cut(s)	1196
HhaI	GCGC	5 cut(s)	6, 252, 1707, 1720, 1784
Hin1I	GRCGYC	1 cut(s)	1705
Hin6I	GCGC	5 cut(s)	4, 250, 1705, 1718, 1782
HinP1I	GCGC	5 cut(s)	4, 250, 1705, 1718, 1782
HpaII	CCGG	2 cut(s)	482, 947
HphI	GGTGA	2 cut(s)	1030, 1205
Hpy166II	GTNNAC	3 cut(s)	876, 1254, 1603
Hpy188I	TCNGA	6 cut(s)	205, 211, 300, 826, 1089, 1438
Hpy188III	TCNNGA	3 cut(s)	751, 1637, 1954
Hpy8I	GTNNAC	3 cut(s)	876, 1254, 1603
Hpy99I	CGWCG	1 cut(s)	2126
HpyAV	CCTTC	5 cut(s)	550, 1522, 2029, 2062, 2286
HpyCH4III	ACNGT	4 cut(s)	17, 27, 33, 2165
HpyCH4IV	ACGT	3 cut(s)	372, 475, 2124
HpyF10VI	GCNNNNNNNGC	9 cut(s)	45, 878, 980, 1166, 1175, 1289, 1362, 1788, 1797
HpyF3I	CTNAG	6 cut(s)	55, 390, 422, 1086, 1827, 2153
HpySE526I	ACGT	3 cut(s)	372, 475, 2124
Hsp92I	GRCGYC	1 cut(s)	1705
HspAI	GCGC	5 cut(s)	4, 250, 1705, 1718, 1782
KasI	GGCGCC	1 cut(s)	1704
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	4 cut(s)	445, 792, 1467, 1684
LguI	GCTCTTC	1 cut(s)	752
LmnI	GCTCC	1 cut(s)	1769
Lsp1109I	GCAGC	6 cut(s)	51, 754, 1279, 1544, 1744, 1810
MaeI	CTAG	5 cut(s)	608, 645, 738, 1110, 1248
MaeII	ACGT	3 cut(s)	372, 475, 2124
MaeIII	GTNAC	3 cut(s)	11, 27, 1555
MalI	GATC	4 cut(s)	447, 794, 1469, 1686
MbiI	CCGCTC	1 cut(s)	1092
MboI	GATC	4 cut(s)	445, 792, 1467, 1684
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	4 cut(s)	460, 1277, 1774, 2148
MlsI	TGGCCA	2 cut(s)	258, 1173
MluNI	TGGCCA	2 cut(s)	258, 1173
Mly113I	GGCGCC	1 cut(s)	1705
MlyI	GAGTC	4 cut(s)	200, 668, 857, 2012
MmeI	TCCRAC	5 cut(s)	228, 278, 804, 894, 2046
Mox20I	TGGCCA	2 cut(s)	258, 1173
Mph1103I	ATGCAT	1 cut(s)	1403
MroXI	GAANNNNTTC	1 cut(s)	1620
MscI	TGGCCA	2 cut(s)	258, 1173
MslI	CAYNNNNRTG	4 cut(s)	1016, 1261, 2163, 2334
Msp20I	TGGCCA	2 cut(s)	258, 1173
MspA1I	CMGCKG	1 cut(s)	1535
MspCI	CTTAAG	1 cut(s)	2305
MspI	CCGG	2 cut(s)	482, 947
MspR9I	CCNGG	2 cut(s)	1709, 1965
Mva1269I	GAATGC	4 cut(s)	511, 762, 976, 1791
MvaI	CCWGG	2 cut(s)	1709, 1965
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	9 cut(s)	45, 878, 980, 1166, 1175, 1289, 1362, 1788, 1797
NarI	GGCGCC	1 cut(s)	1705
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	1414
NdeII	GATC	4 cut(s)	445, 792, 1467, 1684
NheI	GCTAGC	1 cut(s)	607
NlaIV	GGNNCC	2 cut(s)	1706, 1848
NmeAIII	GCCGAG	2 cut(s)	600, 1114
NsbI	TGCGCA	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	1403
NspI	RCATGY	3 cut(s)	1132, 1281, 2152
NspV	TTCGAA	1 cut(s)	1344
OliI	CACNNNNGTG	1 cut(s)	2334
PaeI	GCATGC	1 cut(s)	1132
PciI	ACATGT	1 cut(s)	1277
PciSI	GCTCTTC	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	1 cut(s)	1460
PctI	GAATGC	4 cut(s)	511, 762, 976, 1791
PdmI	GAANNNNTTC	1 cut(s)	1620
PfeI	GAWTC	8 cut(s)	1142, 1341, 1409, 1520, 1633, 1996, 2191, 2312
PflFI	GACNNNGTC	1 cut(s)	1249
PflMI	CCANNNNNTGG	1 cut(s)	1152
PfoI	TCCNGGA	1 cut(s)	1963
PleI	GAGTC	4 cut(s)	200, 667, 856, 2012
PluTI	GGCGCC	1 cut(s)	1708
PpsI	GAGTC	4 cut(s)	200, 667, 856, 2012
PscI	ACATGT	1 cut(s)	1277
Psp124BI	GAGCTC	1 cut(s)	1774
Psp6I	CCWGG	2 cut(s)	1707, 1963
PspFI	CCCAGC	1 cut(s)	1700
PspGI	CCWGG	2 cut(s)	1707, 1963
PspN4I	GGNNCC	2 cut(s)	1706, 1848
PstNI	CAGNNNCTG	2 cut(s)	45, 1757
PsuI	RGATCY	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	1249
PvuII	CAGCTG	1 cut(s)	1535
RsaI	GTAC	4 cut(s)	35, 241, 338, 1385
RsaNI	GTAC	4 cut(s)	34, 240, 337, 1384
RseI	CAYNNNNRTG	4 cut(s)	1016, 1261, 2163, 2334
SacI	GAGCTC	1 cut(s)	1774
SapI	GCTCTTC	1 cut(s)	752
Sau3AI	GATC	4 cut(s)	445, 792, 1467, 1684
SchI	GAGTC	4 cut(s)	200, 668, 857, 2012
ScrFI	CCNGG	2 cut(s)	1709, 1965
SduI	GDGCHC	4 cut(s)	460, 1277, 1774, 2148
SfoI	GGCGCC	1 cut(s)	1706
SfuI	TTCGAA	1 cut(s)	1344
SmiMI	CAYNNNNRTG	4 cut(s)	1016, 1261, 2163, 2334
SmlI	CTYRAG	3 cut(s)	49, 1270, 2305
SmoI	CTYRAG	3 cut(s)	49, 1270, 2305
SphI	GCATGC	1 cut(s)	1132
SspDI	GGCGCC	1 cut(s)	1704
SspMI	CTAG	5 cut(s)	608, 645, 738, 1110, 1248
SstI	GAGCTC	1 cut(s)	1774
StyD4I	CCNGG	2 cut(s)	1707, 1963
StyI	CCWWGG	2 cut(s)	143, 663
TaaI	ACNGT	4 cut(s)	17, 27, 33, 2165
TaiI	ACGT	3 cut(s)	375, 478, 2127
TaqI	TCGA	4 cut(s)	378, 750, 1344, 1518
TatI	WGTACW	1 cut(s)	1383
TauI	GCSGC	4 cut(s)	614, 1095, 1160, 1791
TfiI	GAWTC	8 cut(s)	1142, 1341, 1409, 1520, 1633, 1996, 2191, 2312
TscAI	CASTG	2 cut(s)	2170, 2341
TseI	GCWGC	6 cut(s)	39, 742, 1292, 1532, 1757, 1823
TspGWI	ACGGA	1 cut(s)	2210
TspRI	CASTG	2 cut(s)	2170, 2341
Tth111I	GACNNNGTC	1 cut(s)	1249
Van91I	CCANNNNNTGG	1 cut(s)	1152
Vha464I	CTTAAG	1 cut(s)	2305
XapI	RAATTY	5 cut(s)	221, 930, 955, 1723, 1882
XceI	RCATGY	3 cut(s)	1132, 1281, 2152
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 1181
XmiI	GTMKAC	1 cut(s)	1253
XmnI	GAANNNNTTC	1 cut(s)	1620
XspI	CTAG	5 cut(s)	608, 645, 738, 1110, 1248
Zsp2I	ATGCAT	1 cut(s)	1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.