Rh6AG049000

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
7115459 .. 7116840
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG049000.1

Sequence Viewer

Length: 1047 bp
ATGCTATCTAAACTCTTGTACTCGTTGCTTCCATGTGTGAGAAAGGAGGGAGAAGATGCTGATCGATCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTGATTGCTTCTTGTGATGGAAAATCTAATCCCATTCGCCATTACTCTGCTGATGAACTTGTCAGGGCAACCAATAACTTCCATCCTTCTTGTCTTATATCTGATGGATTTAAGGGTTTATATAAGTGTTTTCTAGACAACCGATTGGTTATGATTAATTGGGTGGAAACTTCAACTTTTTATGAGCACAGGAGAGATATGGCTATTCGTGACATTATAATATCAATGCAGATGAGCCCTCATAAGAATGTTTTGAAACTGTTGGGATGCTGCTTAGAGTTCTCTTTACCGTATCTGGTGTACGAATATGCAGCAAAAGGAGTTCTCAACGAGGCAGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAGAACTAGACTATGTATTGCGAAGAAGGTTGCAAATGCAATTACATATCTCCATACAGCCTTCCCCAGACCCATCATTCATAGAGACCTAAAGCCCTCATGTATTTTCTTGGACCATGACTTTACCCCCAAATTATGTGACTTCTCAATTTCCATAACCATTCCTCCTGAGCAATCGCATGTCGAAGATATTGTGACAGGGACATTTGGGTACCTTGACCCTGCGTATTTGAGTTCTGGTCGCATTACAGAAAAGACTGATGTTTATAGCTTTGGTGTCATTTTACTTGTTTTCTTCACCGGACGAAATCGTTATTGTAATGACAGAGCAGCCAAAGATTCCGACCTTTTGTTTTATGTGAAATCACATGCTTCTGATGACCAGTTTCTGACTATTGTGGATCCTAAAATACTTGAGGAGATAAAAGGAGAAGATGAGCAAGCACAACAGCAGCAGTTGGATGATTTCCTAGCACTGGGATTGTTATGCACTCGAGAGGAACCTGAACGAAGGCCAGACATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAAGTCTATCAATCCTTGTTAG

Protein Analysis

348

Amino Acids

39.63

Weight (kDa)

5.36

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 75 - 271 7.4e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 99 - 338 1.3e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 681
AclWI GGATC 3 cut(s) 108, 866, 879
AcoI YGGCCR 1 cut(s) 1002
AfaI GTAC 4 cut(s) 20, 404, 683, 1017
AfiI CCNNNNNNNGG 2 cut(s) 468, 946
AgsI TTSAA 2 cut(s) 276, 358
AluBI AGCT 1 cut(s) 741
AluI AGCT 1 cut(s) 741
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 3 cut(s) 108, 866, 879
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 2 cut(s) 983, 1002
ApeKI GCWGC 4 cut(s) 372, 413, 800, 922
AseI ATTAAT 1 cut(s) 258
Asp718I GGTACC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 760
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 1 cut(s) 583
BalI TGGCCA 1 cut(s) 1004
BamHI GGATCC 1 cut(s) 871
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 359, 425, 812, 934
BccI CCATC 4 cut(s) 113, 192, 200, 551
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 236, 477, 941
BisI GCNGC 4 cut(s) 373, 414, 801, 923
BlsI GCNGC 4 cut(s) 374, 415, 802, 924
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 3 cut(s) 683, 873, 972
BmrI ACTGGG 1 cut(s) 956
BmsI GCATC 2 cut(s) 46, 359
BmuI ACTGGG 1 cut(s) 956
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 905
Bsa29I ATCGAT 2 cut(s) 64, 996
BsaBI GATNNNNATC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 1 cut(s) 467
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 946
Bse1I ACTGG 2 cut(s) 853, 951
Bse8I GATNNNNATC 1 cut(s) 60
BseCI ATCGAT 2 cut(s) 64, 996
BseDI CCNNGG 1 cut(s) 467
BseGI GGATG 3 cut(s) 184, 374, 937
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 468, 946
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 2 cut(s) 853, 951
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 4 cut(s) 359, 425, 812, 934
BshFI GGCC 2 cut(s) 985, 1004
BshNI GGYRCC 1 cut(s) 681
BshVI ATCGAT 2 cut(s) 64, 996
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 1 cut(s) 771
BslFI GGGAC 2 cut(s) 445, 685
BslI CCNNNNNNNGG 2 cut(s) 468, 946
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 445, 685
BsnI GGCC 2 cut(s) 985, 1004
Bso31I GGTCTC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 291, 341
Bsp143I GATC 5 cut(s) 61, 65, 100, 871, 993
Bsp19I CCATGG 1 cut(s) 467
BspANI GGCC 2 cut(s) 985, 1004
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 2 cut(s) 64, 996
BspLI GGNNCC 3 cut(s) 683, 873, 972
BspPI GGATC 3 cut(s) 108, 866, 879
BspT107I GGYRCC 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 549
BsrI ACTGG 2 cut(s) 853, 951
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 5 cut(s) 61, 65, 100, 871, 993
BssT1I CCWWGG 1 cut(s) 467
Bst4CI ACNGT 2 cut(s) 363, 393
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 2 cut(s) 376, 639
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 184, 374, 937
BstKTI GATC 5 cut(s) 64, 68, 103, 874, 996
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 5 cut(s) 61, 65, 100, 871, 993
BstNSI RCATGY 2 cut(s) 653, 842
BstV1I GCAGC 4 cut(s) 359, 425, 812, 934
BstX2I RGATCY 2 cut(s) 100, 871
BstYI RGATCY 2 cut(s) 100, 871
Bsu15I ATCGAT 2 cut(s) 64, 996
BsuRI GGCC 2 cut(s) 985, 1004
BsuTUI ATCGAT 2 cut(s) 64, 996
BtgI CCRYGG 1 cut(s) 467
BtsCI GGATG 3 cut(s) 184, 374, 937
BtsIMutI CAGTG 1 cut(s) 944
Cac8I GCNNGC 1 cut(s) 912
CaiI CAGNNNCTG 1 cut(s) 859
Cfr13I GGNCC 1 cut(s) 583
ClaI ATCGAT 2 cut(s) 64, 996
Csp6I GTAC 4 cut(s) 19, 403, 682, 1016
CviAII CATG 7 cut(s) 33, 468, 570, 587, 650, 839, 991
CviJI RGCY 8 cut(s) 305, 339, 530, 565, 741, 803, 985, 1004
CviKI_1 RGCY 8 cut(s) 305, 339, 530, 565, 741, 803, 985, 1004
CviQI GTAC 4 cut(s) 19, 403, 682, 1016
DdeI CTNAG 2 cut(s) 376, 639
DpnI GATC 5 cut(s) 63, 67, 102, 873, 995
DpnII GATC 5 cut(s) 61, 65, 100, 871, 993
EaeI YGGCCR 1 cut(s) 1002
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 963
EcoT14I CCWWGG 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 7 cut(s) 36, 471, 573, 590, 653, 842, 994
FaqI GGGAC 2 cut(s) 445, 685
FatI CATG 7 cut(s) 32, 467, 569, 586, 649, 838, 990
Fnu4HI GCNGC 4 cut(s) 373, 414, 801, 923
FokI GGATG 3 cut(s) 171, 381, 944
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 373, 414, 801, 923
FspBI CTAG 3 cut(s) 236, 477, 941
GluI GCNGC 4 cut(s) 373, 414, 801, 923
HaeIII GGCC 2 cut(s) 985, 1004
HapII CCGG 1 cut(s) 771
Hin1II CATG 7 cut(s) 36, 471, 573, 590, 653, 842, 994
HinfI GANTC 2 cut(s) 458, 809
HpaII CCGG 1 cut(s) 771
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 5 cut(s) 105, 205, 814, 847, 861
Hpy188III TCNNGA 4 cut(s) 236, 311, 638, 965
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 4 cut(s) 198, 490, 541, 975
HpyCH4III ACNGT 2 cut(s) 363, 393
HpyCH4V TGCA 5 cut(s) 331, 413, 503, 509, 960
HpyF3I CTNAG 2 cut(s) 376, 639
Hsp92II CATG 7 cut(s) 36, 471, 573, 590, 653, 842, 994
KpnI GGTACC 1 cut(s) 685
Kzo9I GATC 5 cut(s) 61, 65, 100, 871, 993
Lsp1109I GCAGC 4 cut(s) 359, 425, 812, 934
LweI GCATC 2 cut(s) 46, 359
MaeI CTAG 3 cut(s) 236, 477, 941
MaeIII GTNAC 3 cut(s) 311, 608, 664
MalI GATC 5 cut(s) 63, 67, 102, 873, 995
MboI GATC 5 cut(s) 61, 65, 100, 871, 993
MboII GAAGA 5 cut(s) 65, 505, 668, 757, 914
MflI RGATCY 2 cut(s) 100, 871
MhlI GDGCHC 2 cut(s) 291, 341
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 6 cut(s) 89, 259, 510, 602, 618, 1020
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 837, 909
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 2 cut(s) 213, 258
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 1004
MspI CCGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 467
NdeII GATC 5 cut(s) 61, 65, 100, 871, 993
NlaIII CATG 7 cut(s) 36, 471, 573, 590, 653, 842, 994
NlaIV GGNNCC 3 cut(s) 683, 873, 972
NmuCI GTSAC 3 cut(s) 311, 608, 664
NspI RCATGY 2 cut(s) 653, 842
PaeR7I CTCGAG 1 cut(s) 963
PfeI GAWTC 1 cut(s) 809
PkrI GCNGC 4 cut(s) 374, 415, 802, 924
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 258
PsiI TTATAA 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 683, 873, 972
PspPI GGNCC 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 2 cut(s) 100, 871
RsaI GTAC 4 cut(s) 20, 404, 683, 1017
RsaNI GTAC 4 cut(s) 19, 403, 682, 1016
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 2 cut(s) 213, 258
SatI GCNGC 4 cut(s) 373, 414, 801, 923
Sau3AI GATC 5 cut(s) 61, 65, 100, 871, 993
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 2 cut(s) 291, 341
SetI ASST 7 cut(s) 445, 501, 561, 687, 743, 819, 976
SfaNI GCATC 2 cut(s) 46, 359
Sfr274I CTCGAG 1 cut(s) 963
SinI GGWCC 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 963
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 884, 963
SmoI CTYRAG 2 cut(s) 884, 963
Sse9I AATT 6 cut(s) 89, 259, 510, 602, 618, 1020
SspMI CTAG 3 cut(s) 236, 477, 941
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 2 cut(s) 363, 393
TaqI TCGA 4 cut(s) 64, 654, 964, 996
TasI AATT 6 cut(s) 89, 259, 510, 602, 618, 1020
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 2 cut(s) 213, 258
Tru9I TTAA 2 cut(s) 213, 258
TscAI CASTG 1 cut(s) 951
TseFI GTSAC 3 cut(s) 311, 608, 664
TseI GCWGC 4 cut(s) 372, 413, 800, 922
Tsp45I GTSAC 3 cut(s) 311, 608, 664
TspDTI ATGAA 2 cut(s) 171, 539
TspRI CASTG 1 cut(s) 951
VpaK11BI GGWCC 1 cut(s) 583
VspI ATTAAT 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 2 cut(s) 653, 842
XhoI CTCGAG 1 cut(s) 963
XspI CTAG 3 cut(s) 236, 477, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.