Rh6CG040700

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
3944387 .. 3945770
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG040700.1

Sequence Viewer

Length: 957 bp
ATGCCATCCAATGTCTTGTACTCTTTGCTTCCATGTTTGAGAAAGGAGGAAAAACATGCTCATAGATCATTCTTGGATAATGGTAGCAAATTATTAGAGGATCTCATTGCTTCTTGTGATGGAAAATCAAATCCTATTCGCCATTACTCTGCTAATGAACTCATTGGGGCAACCAATAACTTCCATCCTTCTTGCCGTATAGAATTTCATCCCTTCTCATACAGAGGTTTTTTAGACAACCGATTGGTTATCGTTAAGAAGAGTCGGGGAAGGGATGCCGCTATTCATGACATTATAATTTCAATACAAATGAGCAGTCACAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTTCCGGTACCAGCTTTGGTGCACGAATATGCTACACATGGCCAGCTTGTTAAATATGTAGGAGGTTTTGGGGATAATGAAGCTTTACCATGGAGAATTAGACTACGTATTGCAAAGCAGGTTGCTGATTCTATAACATATCTCCATACAGCCTTTCCTAGACCCATCATTCATAGGAACCTATCGCTCAGCAGTATTATCTTGGACAGTGACTTTGTTCCCAAATTACGTGACTTCTCATACTCCGTAACCATTCCTCCTGAACAATGGCAAGTTCAAGAAGATTCCTGGGTAGGGACATATGGGTTCCTTGACCCTGACACCATGAGCCGAAGAGCTGTGGAAGACGATACATTTGGCAATACCCTTGCTCAATATGTTAAATTGAATGCTTGTGATGGCCAATTAATACAGAAAATTGTGGACCTTAAAATACTTGAGGAGCTAAGGGGAGATGATGAGCAAGCACAACAGCAGCAGTTCCATGATTTCCTAGCACTGGCATTGTCATGCATTCAAGATGAAAGGGAAGTAAGGCCAGAGATGATCGATGTGGCCAAAGAACTCATACGAATTGAGAAGTCTGTCATGCCTTCCTAG

Protein Analysis

318

Amino Acids

36.22

Weight (kDa)

6.06

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 92 - 232 1.3e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 308 2.2e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 466
Acc65I GGTACC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 364
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 3 cut(s) 397, 757, 912
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 20, 366
AfiI CCNNNNNNNGG 2 cut(s) 651, 856
AgsI TTSAA 5 cut(s) 303, 334, 635, 745, 875
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 5 cut(s) 371, 403, 440, 695, 802
AluI AGCT 5 cut(s) 371, 403, 440, 695, 802
Alw21I GWGCWC 1 cut(s) 381
Alw44I GTGCAC 1 cut(s) 377
AlwI GGATC 1 cut(s) 108
AoxI GGCC 4 cut(s) 397, 757, 893, 912
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 345, 348, 832
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 6 cut(s) 301, 333, 554, 586, 695, 727
AseI ATTAAT 1 cut(s) 764
Asp718I GGTACC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 781
AvaII GGWCC 1 cut(s) 781
BaeGI GKGCMC 1 cut(s) 381
BalI TGGCCA 3 cut(s) 399, 759, 914
BanI GGYRCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 332, 335, 844
BccI CCATC 5 cut(s) 13, 113, 192, 530, 749
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 646
BfaI CTAG 3 cut(s) 516, 851, 955
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 4 cut(s) 279, 346, 349, 833
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 4 cut(s) 280, 347, 350, 834
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 3 cut(s) 366, 536, 665
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 815
Bsa29I ATCGAT 1 cut(s) 906
BsaAI YACGTR 2 cut(s) 464, 587
BsaJI CCNNGG 2 cut(s) 446, 645
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 856
Bse1I ACTGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 646
BseCI ATCGAT 1 cut(s) 906
BseDI CCNNGG 2 cut(s) 446, 645
BseGI GGATG 4 cut(s) 5, 184, 208, 280
BseLI CCNNNNNNNGG 2 cut(s) 651, 856
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 861
BseRI GAGGAG 1 cut(s) 812
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 3 cut(s) 332, 335, 844
BshFI GGCC 4 cut(s) 399, 759, 895, 914
BshNI GGYRCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 2 cut(s) 651, 856
BsmFI GGGAC 1 cut(s) 667
BsmI GAATGC 2 cut(s) 751, 870
BsnI GGCC 4 cut(s) 399, 759, 895, 914
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 65, 100, 903
Bsp1720I GCTNAGC 1 cut(s) 545
Bsp19I CCATGG 1 cut(s) 446
BspACI CCGC 1 cut(s) 279
BspANI GGCC 4 cut(s) 399, 759, 895, 914
BspCNI CTCAG 1 cut(s) 558
BspDI ATCGAT 1 cut(s) 906
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 366, 536, 665
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 861
BssECI CCNNGG 2 cut(s) 446, 645
BssMI GATC 3 cut(s) 65, 100, 903
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 2 cut(s) 339, 566
Bst6I CTCTTC 2 cut(s) 254, 685
BstBAI YACGTR 2 cut(s) 464, 587
BstC8I GCNNGC 2 cut(s) 401, 822
BstDEI CTNAG 3 cut(s) 352, 545, 803
BstDSI CCRYGG 1 cut(s) 446
BstF5I GGATG 4 cut(s) 5, 184, 208, 280
BstKTI GATC 3 cut(s) 68, 103, 906
BstMBI GATC 3 cut(s) 65, 100, 903
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 644
BstSLI GKGCMC 1 cut(s) 381
BstSNI TACGTA 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 332, 335, 844
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 906
BsuRI GGCC 4 cut(s) 399, 759, 895, 914
BsuTUI ATCGAT 1 cut(s) 906
BtgI CCRYGG 1 cut(s) 446
BtsCI GGATG 4 cut(s) 5, 184, 208, 280
BtsIMutI CAGTG 2 cut(s) 571, 854
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 401, 822
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 781
ClaI ATCGAT 1 cut(s) 906
Csp6I GTAC 2 cut(s) 19, 365
CviAII CATG 9 cut(s) 33, 56, 287, 395, 447, 682, 842, 867, 946
CviQI GTAC 2 cut(s) 19, 365
DdeI CTNAG 3 cut(s) 352, 545, 803
DpnI GATC 3 cut(s) 67, 102, 905
DpnII GATC 3 cut(s) 65, 100, 903
EaeI YGGCCR 3 cut(s) 397, 757, 912
Eam1104I CTCTTC 2 cut(s) 254, 685
EarI CTCTTC 2 cut(s) 254, 685
Eco105I TACGTA 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 9 cut(s) 36, 59, 290, 398, 450, 685, 845, 870, 949
FaqI GGGAC 1 cut(s) 667
FatI CATG 9 cut(s) 32, 55, 286, 394, 446, 681, 841, 866, 945
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 279, 346, 349, 833
FokI GGATG 3 cut(s) 171, 195, 287
Fsp4HI GCNGC 4 cut(s) 279, 346, 349, 833
FspBI CTAG 3 cut(s) 516, 851, 955
GluI GCNGC 4 cut(s) 279, 346, 349, 833
HaeIII GGCC 4 cut(s) 399, 759, 895, 914
HapII CCGG 1 cut(s) 362
Hin1II CATG 9 cut(s) 36, 59, 290, 398, 450, 685, 845, 870, 949
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 3 cut(s) 262, 485, 641
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 379, 781
Hpy188III TCNNGA 4 cut(s) 287, 617, 635, 875
Hpy8I GTNNAC 2 cut(s) 379, 781
HpyAV CCTTC 3 cut(s) 198, 223, 264
HpyCH4III ACNGT 2 cut(s) 339, 566
HpyCH4IV ACGT 2 cut(s) 463, 586
HpyCH4V TGCA 3 cut(s) 379, 470, 870
HpyF3I CTNAG 3 cut(s) 352, 545, 803
HpySE526I ACGT 2 cut(s) 463, 586
Hsp92II CATG 9 cut(s) 36, 59, 290, 398, 450, 685, 845, 870, 949
KpnI GGTACC 1 cut(s) 368
Kzo9I GATC 3 cut(s) 65, 100, 903
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 3 cut(s) 332, 335, 844
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 516, 851, 955
MaeII ACGT 2 cut(s) 463, 586
MaeIII GTNAC 4 cut(s) 317, 566, 587, 604
MalI GATC 3 cut(s) 67, 102, 905
MboI GATC 3 cut(s) 65, 100, 903
MboII GAAGA 4 cut(s) 271, 650, 702, 713
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 3 cut(s) 399, 759, 914
MluCI AATT 9 cut(s) 89, 203, 297, 453, 581, 740, 761, 774, 930
MluNI TGGCCA 3 cut(s) 399, 759, 914
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 6 cut(s) 40, 91, 218, 413, 624, 790
Mox20I TGGCCA 3 cut(s) 399, 759, 914
Mph1103I ATGCAT 1 cut(s) 872
MscI TGGCCA 3 cut(s) 399, 759, 914
MseI TTAA 5 cut(s) 255, 408, 738, 764, 786
MslI CAYNNNNRTG 3 cut(s) 324, 384, 865
Msp20I TGGCCA 3 cut(s) 399, 759, 914
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 646
Mva1269I GAATGC 2 cut(s) 751, 870
MvaI CCWGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 446
NdeI CATATG 1 cut(s) 658
NdeII GATC 3 cut(s) 65, 100, 903
NlaIII CATG 9 cut(s) 36, 59, 290, 398, 450, 685, 845, 870, 949
NlaIV GGNNCC 3 cut(s) 366, 536, 665
NmuCI GTSAC 3 cut(s) 317, 566, 587
NsiI ATGCAT 1 cut(s) 872
NspI RCATGY 1 cut(s) 59
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 685
PctI GAATGC 2 cut(s) 751, 870
PfeI GAWTC 2 cut(s) 485, 641
PkrI GCNGC 4 cut(s) 280, 347, 350, 834
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Ppu21I YACGTR 2 cut(s) 464, 587
PshBI ATTAAT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 366, 536, 665
PspPI GGNCC 1 cut(s) 781
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 2 cut(s) 20, 366
RsaNI GTAC 2 cut(s) 19, 365
RseI CAYNNNNRTG 3 cut(s) 324, 384, 865
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 5 cut(s) 255, 408, 738, 764, 786
SatI GCNGC 4 cut(s) 279, 346, 349, 833
Sau3AI GATC 3 cut(s) 65, 100, 903
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 3 cut(s) 324, 384, 865
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
SnaBI TACGTA 1 cut(s) 464
Sse9I AATT 9 cut(s) 89, 203, 297, 453, 581, 740, 761, 774, 930
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 516, 851, 955
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 339, 566
TaiI ACGT 2 cut(s) 466, 589
TaqI TCGA 1 cut(s) 906
TasI AATT 9 cut(s) 89, 203, 297, 453, 581, 740, 761, 774, 930
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 485, 641
Tru1I TTAA 5 cut(s) 255, 408, 738, 764, 786
Tru9I TTAA 5 cut(s) 255, 408, 738, 764, 786
TscAI CASTG 2 cut(s) 571, 861
TseFI GTSAC 3 cut(s) 317, 566, 587
TseI GCWGC 3 cut(s) 345, 348, 832
Tsp45I GTSAC 3 cut(s) 317, 566, 587
TspDTI ATGAA 6 cut(s) 171, 197, 275, 450, 518, 894
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 2 cut(s) 571, 861
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 781
VspI ATTAAT 1 cut(s) 764
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 59
XspI CTAG 3 cut(s) 516, 851, 955
Zsp2I ATGCAT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.