Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

3962225 .. 3964488

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG041100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCCATCCAATGTCTTGAACTCGTTGCTTCCATGTTTGAGAAAGGAGGGAGAAGATGCTGATAGATCATTCTTGGATAATGGAAGCAAATTATTAGAGGATCTTATTGCTTCTTGTGATGGGAAATCTAATACTATTCGCCATTACTCTGCTCAAGAACTCATCAGGGCAACCAATAACTTTGATCCTTCTGGCATTATACCGGAGTGTTCATTCTATTATAAAGGTTTTCTAGACAACCGATTAATCATCATTAAGAAGAGAGGGGGGAGGGATGGGCCCTATAGGAATTTCAAGAGGGTGAGGGAGGAGGCTATTCGTGATATTATAATTTCAATGCAGATGAGCACTCACAAGAATGTTTTGAAATTGTTGGGCTGCTGTTTAGAGTTCCCTATACCAGCTCTGGTGCATGAGTATGCAACGCAAGGCTGTGTTCTTAACGACGAAGGAGGTTTCCGGTCTAATGAATCTCTACCATGGAAAACTAGACTACGTATTGCAAAGCAGCTGGCTAGTGCAATTACATATCTACATACAGCCTTTCCAAGACCTATCATTCACAGGCATCTGAGGCCCCATTGTATTTTCTTGGATGATGACTTTGTTCCCAAATTATGTGACTTCTCATACTCCATAACCATTCCTCCTGAGAAATCCCATGTTCAAGATGTTGTGATAAAAGGGACAATGTGGTACCTTAGCCCTGAGTTTCTTGATTCTGGTTACATTTCAGAAAAATTTGATGTTTATAGCTTTGGTGTGATTTTACTTGGCTTCTTGGTGGGACGGAAACTTTTGGCAGGACATGACGACCTTATAAAATCTGTGAAATTGCATGCTTGTGATGGCCAGATTCAAACAATTGTTGATCCTAAAATACTCGAGGAGTTAGGGGGAGGTAATGAGCCAACACAACTTCAGTTGCATGATTTCCTAGCACTAGCATGGTTATCCACTCGAGATGAAAGTGAACTGAGGCCAGATATGATTGATGTGGCCAAAGAACTCATGCGAATTGAGAAGTCTATCTGGCCCCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

39.52

Weight (kDa)

6.27

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	103 - 274	4.4e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	104 - 258	1.8e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	222, 329, 821
Acc65I	GGTACC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	696
AclWI	GGATC	3 cut(s)	108, 179, 866
AcoI	YGGCCR	2 cut(s)	850, 999
AcsI	RAATTY	2 cut(s)	289, 740
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	1 cut(s)	698
AgsI	TTSAA	6 cut(s)	19, 295, 336, 367, 668, 860
AluBI	AGCT	3 cut(s)	404, 511, 756
AluI	AGCT	3 cut(s)	404, 511, 756
Alw21I	GWGCWC	1 cut(s)	350
AlwI	GGATC	3 cut(s)	108, 179, 866
Ama87I	CYCGRG	2 cut(s)	884, 960
AoxI	GGCC	6 cut(s)	278, 575, 850, 980, 999, 1034
ApaI	GGGCCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	378, 508
ApoI	RAATTY	2 cut(s)	289, 740
AseI	ATTAAT	1 cut(s)	245
Asp718I	GGTACC	1 cut(s)	696
AspS9I	GGNCC	4 cut(s)	278, 279, 576, 1035
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	2 cut(s)	884, 960
BaeGI	GKGCMC	1 cut(s)	282
BalI	TGGCCA	2 cut(s)	852, 1001
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	365, 520
BccI	CCATC	4 cut(s)	13, 113, 269, 842
BfaI	CTAG	6 cut(s)	233, 489, 516, 938, 944, 1045
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	2 cut(s)	379, 509
BlsI	GCNGC	2 cut(s)	380, 510
BmeT110I	CYCGRG	2 cut(s)	884, 960
BmgT120I	GGNCC	4 cut(s)	278, 279, 576, 1035
BmiI	GGNNCC	4 cut(s)	280, 578, 698, 1037
BmsI	GCATC	2 cut(s)	46, 577
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	2 cut(s)	202, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	3 cut(s)	5, 280, 601
BseMII	CTCAG	4 cut(s)	563, 642, 699, 968
BseRI	GAGGAG	2 cut(s)	323, 902
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	365, 520
BshFI	GGCC	6 cut(s)	280, 577, 852, 982, 1001, 1036
BshNI	GGYRCC	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	2 cut(s)	884, 960
BsiSI	CCGG	2 cut(s)	203, 460
BslFI	GGGAC	2 cut(s)	700, 801
BsmFI	GGGAC	2 cut(s)	700, 801
BsnI	GGCC	6 cut(s)	280, 577, 852, 982, 1001, 1036
BsoBI	CYCGRG	2 cut(s)	884, 960
Bsp120I	GGGCCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	282, 350
Bsp143I	GATC	4 cut(s)	65, 100, 184, 871
Bsp19I	CCATGG	1 cut(s)	479
BspANI	GGCC	6 cut(s)	280, 577, 852, 982, 1001, 1036
BspCNI	CTCAG	4 cut(s)	564, 643, 700, 969
BspLI	GGNNCC	4 cut(s)	280, 578, 698, 1037
BspPI	GGATC	3 cut(s)	108, 179, 866
BspT107I	GGYRCC	1 cut(s)	696
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	4 cut(s)	65, 100, 184, 871
BssT1I	CCWWGG	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	513, 840
BstDEI	CTNAG	5 cut(s)	572, 651, 701, 708, 977
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	5, 280, 601
BstKTI	GATC	4 cut(s)	68, 103, 187, 874
BstMBI	GATC	4 cut(s)	65, 100, 184, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	842
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	282
BstSNI	TACGTA	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	365, 520
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	6 cut(s)	280, 577, 852, 982, 1001, 1036
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	5, 280, 601
Cac8I	GCNNGC	2 cut(s)	513, 840
Cfr13I	GGNCC	4 cut(s)	278, 279, 576, 1035
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	9 cut(s)	33, 413, 480, 662, 809, 839, 929, 948, 1012
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	5 cut(s)	572, 651, 701, 708, 977
DpnI	GATC	4 cut(s)	67, 102, 186, 873
DpnII	GATC	4 cut(s)	65, 100, 184, 871
EaeI	YGGCCR	2 cut(s)	850, 999
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco105I	TACGTA	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	905
Eco88I	CYCGRG	2 cut(s)	884, 960
EcoO109I	RGGNCCY	2 cut(s)	279, 576
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	9 cut(s)	36, 416, 483, 665, 812, 842, 932, 951, 1015
FaqI	GGGAC	2 cut(s)	700, 801
FatI	CATG	9 cut(s)	32, 412, 479, 661, 808, 838, 928, 947, 1011
Fnu4HI	GCNGC	2 cut(s)	379, 509
FokI	GGATG	2 cut(s)	287, 608
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	379, 509
FspBI	CTAG	6 cut(s)	233, 489, 516, 938, 944, 1045
GluI	GCNGC	2 cut(s)	379, 509
HaeIII	GGCC	6 cut(s)	280, 577, 852, 982, 1001, 1036
HapII	CCGG	2 cut(s)	203, 460
Hin1II	CATG	9 cut(s)	36, 416, 483, 665, 812, 842, 932, 951, 1015
HinfI	GANTC	3 cut(s)	470, 719, 856
HpaII	CCGG	2 cut(s)	203, 460
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	974
Hpy188I	TCNGA	2 cut(s)	573, 736
Hpy188III	TCNNGA	9 cut(s)	16, 155, 233, 295, 320, 650, 668, 716, 962
Hpy8I	GTNNAC	1 cut(s)	974
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	198, 443
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	340, 412, 422, 503, 521, 838, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpyF3I	CTNAG	5 cut(s)	572, 651, 701, 708, 977
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	9 cut(s)	36, 416, 483, 665, 812, 842, 932, 951, 1015
KpnI	GGTACC	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	65, 100, 184, 871
Lsp1109I	GCAGC	2 cut(s)	365, 520
LweI	GCATC	2 cut(s)	46, 577
MaeI	CTAG	6 cut(s)	233, 489, 516, 938, 944, 1045
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	620, 725
MalI	GATC	4 cut(s)	67, 102, 186, 873
MboI	GATC	4 cut(s)	65, 100, 184, 871
MboII	GAAGA	2 cut(s)	65, 271
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	282, 350
MlsI	TGGCCA	2 cut(s)	852, 1001
MluNI	TGGCCA	2 cut(s)	852, 1001
Mox20I	TGGCCA	2 cut(s)	852, 1001
MscI	TGGCCA	2 cut(s)	852, 1001
MseI	TTAA	3 cut(s)	245, 255, 441
MslI	CAYNNNNRTG	4 cut(s)	357, 417, 843, 946
Msp20I	TGGCCA	2 cut(s)	852, 1001
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	2 cut(s)	203, 460
MunI	CAATTG	1 cut(s)	864
MwoI	GCNNNNNNNGC	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	4 cut(s)	65, 100, 184, 871
NlaIII	CATG	9 cut(s)	36, 416, 483, 665, 812, 842, 932, 951, 1015
NlaIV	GGNNCC	4 cut(s)	280, 578, 698, 1037
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	842
PaeR7I	CTCGAG	2 cut(s)	884, 960
PfeI	GAWTC	3 cut(s)	470, 719, 856
PkrI	GCNGC	2 cut(s)	380, 510
Ppu21I	YACGTR	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	245
PsiI	TTATAA	3 cut(s)	222, 329, 821
PspN4I	GGNNCC	4 cut(s)	280, 578, 698, 1037
PspOMI	GGGCCC	1 cut(s)	278
PspPI	GGNCC	4 cut(s)	278, 279, 576, 1035
PspXI	VCTCGAGB	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	4 cut(s)	357, 417, 843, 946
SaqAI	TTAA	3 cut(s)	245, 255, 441
SatI	GCNGC	2 cut(s)	379, 509
Sau3AI	GATC	4 cut(s)	65, 100, 184, 871
Sau96I	GGNCC	4 cut(s)	278, 279, 576, 1035
SduI	GDGCHC	2 cut(s)	282, 350
SfaNI	GCATC	2 cut(s)	46, 577
SfcI	CTRYAG	1 cut(s)	283
Sfr274I	CTCGAG	2 cut(s)	884, 960
SlaI	CTCGAG	2 cut(s)	884, 960
SmiMI	CAYNNNNRTG	4 cut(s)	357, 417, 843, 946
SmlI	CTYRAG	3 cut(s)	153, 884, 960
SmoI	CTYRAG	3 cut(s)	153, 884, 960
SnaBI	TACGTA	1 cut(s)	497
SphI	GCATGC	1 cut(s)	842
SspMI	CTAG	6 cut(s)	233, 489, 516, 938, 944, 1045
StyI	CCWWGG	1 cut(s)	479
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	885, 961
TfiI	GAWTC	3 cut(s)	470, 719, 856
Tru1I	TTAA	3 cut(s)	245, 255, 441
Tru9I	TTAA	3 cut(s)	245, 255, 441
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	378, 508
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	201, 483, 981
TspGWI	ACGGA	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	2 cut(s)	289, 740
XbaI	TCTAGA	1 cut(s)	232
XceI	RCATGY	1 cut(s)	842
XhoI	CTCGAG	2 cut(s)	884, 960
XspI	CTAG	6 cut(s)	233, 489, 516, 938, 944, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.