Rh6AG048000

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
6950954 .. 6951409
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG048000.1

Sequence Viewer

Length: 456 bp
ATGAAAGGTTCACTTCATGTCAGAGATGAGGCTATCCGGGACACTATATTATCAACACAGATGAGCACTCATAAGAATGTTTTGAAACTGTTGGGCTGCTGCTTAGAGTTCCGTGAACCGGCTCTGGTGCACGAATATGCAGCAAAAGGAGTTCTCAGCTATGAAGGAGGTTATGGGGATAATGAGTCCCTCCCATGGAAAACTAGACTATGTATTGCGAAGCAGCTTGCAAATGCAATTACATATCTCCATACAGCCTTCCCAAGACCCATCATTCATAGAAACCTAAAGCCAACATGTATTTTCTTGGACAATGACTATGTTCCCAAAATCTCTGACTTCTCAATTTCCATAACCATTCCTCCTGAGCAATCACATGTCGAAGCTCTTGCGAGAGGGACTCAGGGACATTTGGGTACCTTGACCCTGCGTATATGGATTCTAATCGCATTATAG

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

8.38

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 12 - 125 1.2e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 125 1.9e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 118, 195
AflIII ACRYGT 2 cut(s) 296, 376
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 3 cut(s) 159, 226, 386
AluI AGCT 3 cut(s) 159, 226, 386
Alw21I GWGCWC 2 cut(s) 68, 132
Alw44I GTGCAC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 4 cut(s) 96, 99, 140, 223
Asp718I GGTACC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 68, 132
BbvI GCAGC 4 cut(s) 83, 86, 152, 235
BccI CCATC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BcnI CCSGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 97, 100, 141, 224
BlsI GCNGC 4 cut(s) 98, 101, 142, 225
Bme1390I CCNGG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 385, 417
Bpu10I CCTNAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 195
Bse118I RCCGGY 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 194
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 118, 195
BseMII CTCAG 3 cut(s) 169, 357, 416
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 4 cut(s) 83, 86, 152, 235
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 2 cut(s) 68, 132
BsiSI CCGG 2 cut(s) 37, 119
BslFI GGGAC 4 cut(s) 53, 172, 412, 420
BslI CCNNNNNNNGG 2 cut(s) 118, 195
BsmFI GGGAC 4 cut(s) 53, 172, 412, 420
Bsp1286I GDGCHC 2 cut(s) 68, 132
Bsp19I CCATGG 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 168, 358, 415
BspLI GGNNCC 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 4 cut(s) 103, 155, 366, 402
BstDSI CCRYGG 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 300, 380
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 83, 86, 152, 235
BtgI CCRYGG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 118
Csp6I GTAC 1 cut(s) 417
CviAII CATG 4 cut(s) 17, 195, 297, 377
CviJI RGCY 8 cut(s) 32, 96, 122, 159, 226, 257, 292, 386
CviKI_1 RGCY 8 cut(s) 32, 96, 122, 159, 226, 257, 292, 386
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 103, 155, 366, 402
Eco130I CCWWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 20, 198, 300, 380
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 4 cut(s) 53, 172, 412, 420
FatI CATG 4 cut(s) 16, 194, 296, 376
Fnu4HI GCNGC 4 cut(s) 97, 100, 141, 224
Fsp4HI GCNGC 4 cut(s) 97, 100, 141, 224
FspBI CTAG 1 cut(s) 204
GluI GCNGC 4 cut(s) 97, 100, 141, 224
HapII CCGG 2 cut(s) 37, 119
Hin1II CATG 4 cut(s) 20, 198, 300, 380
HinfI GANTC 3 cut(s) 185, 400, 439
HpaII CCGG 2 cut(s) 37, 119
Hpy166II GTNNAC 3 cut(s) 11, 116, 130
Hpy188I TCNGA 2 cut(s) 23, 337
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 3 cut(s) 11, 116, 130
HpyAV CCTTC 2 cut(s) 158, 268
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 4 cut(s) 130, 140, 230, 236
HpyF3I CTNAG 4 cut(s) 103, 155, 366, 402
Hsp92II CATG 4 cut(s) 20, 198, 300, 380
KpnI GGTACC 1 cut(s) 420
LpnPI CCDG 6 cut(s) 50, 110, 132, 378, 389, 440
Lsp1109I GCAGC 4 cut(s) 83, 86, 152, 235
MaeI CTAG 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 68, 132
MluCI AATT 2 cut(s) 237, 345
MlyI GAGTC 2 cut(s) 194, 394
MnlI CCTC 5 cut(s) 22, 161, 200, 372, 389
MslI CAYNNNNRTG 2 cut(s) 75, 135
MspI CCGG 2 cut(s) 37, 119
MspR9I CCNGG 1 cut(s) 38
NciI CCSGG 1 cut(s) 38
NcoI CCATGG 1 cut(s) 194
NlaIII CATG 4 cut(s) 20, 198, 300, 380
NlaIV GGNNCC 1 cut(s) 418
NspI RCATGY 2 cut(s) 300, 380
PciI ACATGT 2 cut(s) 296, 376
PfeI GAWTC 1 cut(s) 439
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 4 cut(s) 98, 101, 142, 225
PleI GAGTC 2 cut(s) 193, 394
PpsI GAGTC 2 cut(s) 193, 394
PscI ACATGT 2 cut(s) 296, 376
PspN4I GGNNCC 1 cut(s) 418
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 75, 135
SatI GCNGC 4 cut(s) 97, 100, 141, 224
SchI GAGTC 2 cut(s) 194, 394
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 68, 132
SetI ASST 7 cut(s) 10, 161, 172, 228, 288, 388, 422
SmiMI CAYNNNNRTG 2 cut(s) 75, 135
Sse9I AATT 2 cut(s) 237, 345
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 381
TasI AATT 2 cut(s) 237, 345
TfiI GAWTC 1 cut(s) 439
TseI GCWGC 4 cut(s) 96, 99, 140, 223
TspDTI ATGAA 4 cut(s) 5, 17, 177, 266
TspGWI ACGGA 1 cut(s) 101
VneI GTGCAC 1 cut(s) 128
XceI RCATGY 2 cut(s) 300, 380
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.