Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0000327

Physical Location & Seq

Genomic Coordinates Forward (+)

130043 .. 130753

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002553.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgcagatgagcactcacaagaatgttttgaaattgttgggctgctgtttagagttccccataccagctctggtgcatgagtatgcaacgcaaggctgtgttcttaacgacaaaggaggtttccggtctaatgaatctctaccatggaaaactagagtacgtattgcgaagcagctggctagtgcaatcacatatctacatacagcctttccaatacctatcattcacaggcatctgagtccccattgtattttctttgatgatgactttgttcccaaattatgtgacttctcatactctataaccattcctcctgagaaatcccatgttcaagaagttgtgataaaagggacaatgtggtaccttagccctgagtttcttgattctggttacatttcagaaaaatttgatgtttatagctttggtgtgattttacttggcttcttggtgggacggaaacttttggcaggacatgacgaccttataaaatctgtgaaattgcatgcttgtgacggccagattcaaacaattgttgatcctaaaatactcgaggagttagggggaggtaatgagccaacacaacttcagttgcatgatttcctagcactagcatggttatgcactcgagatgaaagggatctgaggccagatatgattgatgtggccaaagaactcatgcgaattgagaagtctatctggcctccttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

236

Amino Acids

26.78

Weight (kDa)

6.05

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57700 AT3G57710 AT3G57720 AT3G57730 AT3G57750 AT3G57750 AT3G57770
fragaria_vesca	FvH4_2g03430 FvH4_2g03431 FvH4_2g09830
malus_domestica	MD05G1105000.v1.1 MD05G1105300.v1.1 MD10G1109300.v1.1 MD10G1109400.v1.1 MD10G1109700.v1.1 MD10G1109800.v1.1
prunus_persica	Prupe.8G149300_v2.0.a1 Prupe.8G149400_v2.0.a1 Prupe.8G149500_v2.0.a1 Prupe.8G149600_v2.0.a1 Prupe.8G149700_v2.0.a1 Prupe.8G149800_v2.0.a1
pyrus_communis	pycom05g10130 pycom05g10140 pycom05g10190 pycom05g10200 pycom05g10210 pycom05g10220 pycom10g09470 pycom10g09500 pycom10g09510 pycom10g09520
rosa_chinensis	RchiOBHm_Chr6g0248521 RchiOBHm_Chr6g0248531 RchiOBHm_Chr6g0248551 RchiOBHm_Chr6g0248561 RchiOBHm_Chr6g0248591 RchiOBHm_Chr6g0252471 RchiOBHm_Chr6g0266181 RchiOBHm_Chr6g0266231 RchiOBHm_Chr7g0194481 RchiOBHm_Chr7g0194491 RchiOBHm_Chr7g0194561
rosa_laevigata	RLG00000004197 RLG00000014108 RLG00000015141 RLG00000015142 RLG00000015143 RLG00000015145 RLG00000015148 RLG00000015149
rosa_multiflora	Rmu_sc0002393.1_g000003 Rmu_sc0002553.1_g000019 Rmu_sc0002553.1_g000020 Rmu_sc0002553.1_g000027 Rmu_sc0002553.1_g000029 Rmu_sc0002553.1_g000033 Rmu_sc0003605.1_g000049 Rmu_sc0013794.1_g000007
rosa_roxburghii	Rroxscaffold_174G00435350 Rroxscaffold_3G00261310 Rroxscaffold_7G00201830 Rroxscaffold_7G00212700 Rroxscaffold_7G00213190 Rroxscaffold_7G00213210 Rroxscaffold_7G00213220 Rroxscaffold_7G00213240
rosa_rugosa	Rorug05G0531800 Rorug05G0531900 Rorug05G0532100 Rorug05G0532300 Rorug05G0535800 Rorug05G0535900 Rorug06G0024600 Rorug07G0015900 Rorug07G0016300
rosa_samantha	Rh6AG047700 Rh6AG048000 Rh6AG048100 Rh6AG048800 Rh6AG049000 Rh6AG049100 Rh6AG049200 Rh6AG052200 Rh6AG145300 Rh6BG044000 Rh6BG044200 Rh6BG044500 Rh6BG044800 Rh6BG044900 Rh6BG045000 Rh6CG040700 Rh6CG041100 Rh6CG045000 Rh6CG142400 Rh6CG142500 Rh6DG037100 Rh6DG037300 Rh6DG037400 Rh6DG037500 Rh6DG040700 Rh7BG143800
rosa_wichuraiana	Rw6G004140 Rw6G004190 Rw6G004200 Rw6G004210 Rw6G004220 Rw6G004240 Rw6G004250 Rw6G004350 Rw6G004710 Rw6G012550 Rw7G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	530, 645
AcoI	YGGCCR	2 cut(s)	514, 663
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	2 cut(s)	159, 362
AgsI	TTSAA	3 cut(s)	31, 332, 524
AluBI	AGCT	3 cut(s)	68, 175, 420
AluI	AGCT	3 cut(s)	68, 175, 420
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	530, 645
Ama87I	CYCGRG	2 cut(s)	548, 624
AoxI	GGCC	4 cut(s)	514, 644, 663, 698
ApeKI	GCWGC	2 cut(s)	42, 172
ApoI	RAATTY	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	360
AvaI	CYCGRG	2 cut(s)	548, 624
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	29, 184
BceAI	ACGGC	1 cut(s)	529
BfaI	CTAG	5 cut(s)	153, 180, 602, 608, 709
BisI	GCNGC	2 cut(s)	43, 173
BlsI	GCNGC	2 cut(s)	44, 174
BmeT110I	CYCGRG	2 cut(s)	548, 624
BmiI	GGNNCC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
BseDI	CCNNGG	1 cut(s)	143
BseMII	CTCAG	4 cut(s)	227, 306, 363, 632
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	29, 184
BshFI	GGCC	4 cut(s)	516, 646, 665, 700
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	14
BsiHKCI	CYCGRG	2 cut(s)	548, 624
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	3 cut(s)	225, 364, 465
BsmFI	GGGAC	3 cut(s)	225, 364, 465
BsnI	GGCC	4 cut(s)	516, 646, 665, 700
BsoBI	CYCGRG	2 cut(s)	548, 624
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	535, 637
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	4 cut(s)	516, 646, 665, 700
BspCNI	CTCAG	4 cut(s)	228, 307, 364, 633
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	530, 645
BspT107I	GGYRCC	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	2 cut(s)	535, 637
BssT1I	CCWWGG	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	177, 504
BstDEI	CTNAG	5 cut(s)	236, 315, 365, 372, 641
BstDSI	CCRYGG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	538, 640
BstMBI	GATC	2 cut(s)	535, 637
BstNSI	RCATGY	1 cut(s)	506
BstSNI	TACGTA	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	29, 184
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	4 cut(s)	516, 646, 665, 700
BtgI	CCRYGG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	177, 504
Csp6I	GTAC	2 cut(s)	158, 361
CviAII	CATG	8 cut(s)	77, 144, 326, 473, 503, 593, 612, 676
CviQI	GTAC	2 cut(s)	158, 361
DdeI	CTNAG	5 cut(s)	236, 315, 365, 372, 641
DpnI	GATC	2 cut(s)	537, 639
DpnII	GATC	2 cut(s)	535, 637
EaeI	YGGCCR	2 cut(s)	514, 663
Eco105I	TACGTA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	548, 624
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	8 cut(s)	80, 147, 329, 476, 506, 596, 615, 679
FaqI	GGGAC	3 cut(s)	225, 364, 465
FatI	CATG	8 cut(s)	76, 143, 325, 472, 502, 592, 611, 675
Fnu4HI	GCNGC	2 cut(s)	43, 173
Fsp4HI	GCNGC	2 cut(s)	43, 173
FspBI	CTAG	5 cut(s)	153, 180, 602, 608, 709
GluI	GCNGC	2 cut(s)	43, 173
HaeIII	GGCC	4 cut(s)	516, 646, 665, 700
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	8 cut(s)	80, 147, 329, 476, 506, 596, 615, 679
HinfI	GANTC	4 cut(s)	134, 238, 383, 520
HpaII	CCGG	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	237, 400, 642
Hpy188III	TCNNGA	4 cut(s)	314, 332, 380, 626
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	7 cut(s)	4, 76, 86, 185, 502, 592, 621
HpyF3I	CTNAG	5 cut(s)	236, 315, 365, 372, 641
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	8 cut(s)	80, 147, 329, 476, 506, 596, 615, 679
KpnI	GGTACC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	535, 637
Lsp1109I	GCAGC	2 cut(s)	29, 184
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	5 cut(s)	153, 180, 602, 608, 709
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	284, 389, 509
MalI	GATC	2 cut(s)	537, 639
MboI	GATC	2 cut(s)	535, 637
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	6 cut(s)	32, 278, 404, 497, 528, 681
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	110, 321, 544, 557, 636, 711
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	5 cut(s)	21, 81, 507, 610, 616
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	528
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	535, 637
NlaIII	CATG	8 cut(s)	80, 147, 329, 476, 506, 596, 615, 679
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	2 cut(s)	284, 509
NspI	RCATGY	1 cut(s)	506
PaeI	GCATGC	1 cut(s)	506
PaeR7I	CTCGAG	2 cut(s)	548, 624
PfeI	GAWTC	3 cut(s)	134, 383, 520
PkrI	GCNGC	2 cut(s)	44, 174
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Ppu21I	YACGTR	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	159, 362
RsaNI	GTAC	2 cut(s)	158, 361
RseI	CAYNNNNRTG	5 cut(s)	21, 81, 507, 610, 616
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	43, 173
Sau3AI	GATC	2 cut(s)	535, 637
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	9 cut(s)	70, 121, 163, 177, 220, 366, 422, 483, 568
SfaNI	GCATC	1 cut(s)	241
Sfr274I	CTCGAG	2 cut(s)	548, 624
SlaI	CTCGAG	2 cut(s)	548, 624
SmiMI	CAYNNNNRTG	5 cut(s)	21, 81, 507, 610, 616
SmlI	CTYRAG	2 cut(s)	548, 624
SmoI	CTYRAG	2 cut(s)	548, 624
SnaBI	TACGTA	1 cut(s)	161
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	6 cut(s)	32, 278, 404, 497, 528, 681
SspMI	CTAG	5 cut(s)	153, 180, 602, 608, 709
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	549, 625
TasI	AATT	6 cut(s)	32, 278, 404, 497, 528, 681
TfiI	GAWTC	3 cut(s)	134, 383, 520
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	284, 509
TseI	GCWGC	2 cut(s)	42, 172
Tsp45I	GTSAC	2 cut(s)	284, 509
TspDTI	ATGAA	2 cut(s)	147, 645
TspGWI	ACGGA	1 cut(s)	469
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XhoI	CTCGAG	2 cut(s)	548, 624
XspI	CTAG	5 cut(s)	153, 180, 602, 608, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.